Gene: Plod1 (procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1) Rattus norvegicus
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Symbol: Plod1
Name: procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1
Description: ENCODES a protein that exhibits ferrous iron binding; L-ascorbic acid binding; peptide binding; INVOLVED IN cellular response to hormone stimulus; peptidyl-lysine hydroxylation; response to hypoxia; PARTICIPATES IN lysine degradation pathway; ASSOCIATED WITH Hypothyroidism; hypothyroidism; Aortic Aneurysm, Thoracic (ortholog); FOUND IN catalytic complex (ortholog); extracellular exosome (ortholog); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: LH1; lysyl hydroxylase 1; Plod; procollagen-lysine 1, 2-oxoglutarate 5-dioxygenase 1; procollagen-lysine 2-oxoglutarate 5-dioxygenase (lysine hydroxylase Ehlers-Danlos syndrome type VI); procollagen-lysine, 2-oxoglutarate 5-dioxygenase (lysine hydroxylase, Ehlers-Danlos syndrome type VI); procollagen-lysine,2-oxoglutarate 5-dioxygenase 1
Orthologs:
Homo sapiens (human) : PLOD1 (procollagen-lysine,2-oxoglutarate 5-dioxygenase 1)  HGNC  AGR
Mus musculus (house mouse) : Plod1 (procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1)  MGI  AGR
Chinchilla lanigera (long-tailed chinchilla) : Plod1 (procollagen-lysine,2-oxoglutarate 5-dioxygenase 1)
Pan paniscus (bonobo/pygmy chimpanzee) : PLOD1 (procollagen-lysine,2-oxoglutarate 5-dioxygenase 1)
Canis lupus familiaris (dog) : PLOD1 (procollagen-lysine,2-oxoglutarate 5-dioxygenase 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Plod1 (procollagen-lysine,2-oxoglutarate 5-dioxygenase 1)
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Allele / Splice: Plod1em1Mcwi  
Genetic Models: SS-Plod1em1Mcwi
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.05164,720,629 - 164,747,071 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.05168,379,092 - 168,405,534 (-)NCBIRnor5.0rn5Rnor5.0
RGSC_v3.45164,987,252 - 165,012,581 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15164,997,439 - 165,022,772 (-)NCBI
Celera5156,623,980 - 156,649,807 (-)NCBI
Cytogenetic Map5q36NCBImapview
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
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References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
Genetic Models
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants

Additional Information

External Database Links
Nomenclature History
 
More on Plod1
AGR Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Map Viewer
Vista
Vista + UCSC

RGD Object Information
RGD ID: 621382
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2017-10-03
Status: ACTIVE