Slc28a2 (solute carrier family 28 (sodium-coupled nucleoside transporter), member 2) - Rat Genome Database

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Gene: Slc28a2 (solute carrier family 28 (sodium-coupled nucleoside transporter), member 2) Mus musculus
Analyze
Symbol: Slc28a2
Name: solute carrier family 28 (sodium-coupled nucleoside transporter), member 2
RGD ID: 62131
MGI Page MGI
Description: Enables purine nucleoside transmembrane transporter activity. Predicted to be involved in several processes, including nucleoside transport; protein localization to cell surface; and purine nucleobase transmembrane transport. Located in brush border membrane. Is expressed in foregut-midgut junction; midgut; and placenta. Orthologous to human SLC28A2 (solute carrier family 28 member 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2010208B10Rik; B430217P18; BB152493; CNT; CNT 2; Cnt2; concentrative nucleoside transporter 2; Na(+)/nucleoside cotransporter 2; purine-selective Na+ nucleoside cotransporter; sodium-coupled nucleoside transporter 2; sodium/nucleoside cotransporter 2; sodium/purine nucleoside cotransporter; solute carrier family 28 member 2; SPNT
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392122,256,836 - 122,291,633 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2122,256,958 - 122,291,618 (+)EnsemblGRCm39 Ensembl
GRCm382122,426,357 - 122,461,152 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2122,426,477 - 122,461,137 (+)EnsemblGRCm38mm10GRCm38
MGSCv372122,252,213 - 122,286,866 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362122,117,918 - 122,152,571 (+)NCBIMGSCv36mm8
Celera2123,576,831 - 123,613,534 (+)NCBICelera
Cytogenetic Map2E5NCBI
cM Map260.63NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
17beta-estradiol 3-benzoate  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dinitrotoluene  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
aconitine  (ISO)
acrylamide  (ISO)
adenosine  (ISO)
aflatoxin B1  (ISO)
ammonium chloride  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (ISO)
buspirone  (ISO)
buta-1,3-diene  (EXP)
carbamazepine  (ISO)
carbon nanotube  (EXP)
chlorpyrifos  (EXP)
clofibrate  (ISO)
clofibric acid  (ISO)
cobalt dichloride  (ISO)
coumarin  (ISO)
D-penicillamine  (ISO)
decabromodiphenyl ether  (ISO)
dexamethasone  (ISO)
dimethylarsinic acid  (EXP)
endosulfan  (ISO)
epoxiconazole  (EXP)
flutamide  (ISO)
genistein  (ISO)
gentamycin  (ISO)
glyphosate  (ISO)
indole-3-methanol  (ISO)
leflunomide  (ISO)
methimazole  (ISO)
methylarsonic acid  (EXP)
N,N-diethyl-m-toluamide  (ISO)
N-nitrosodiethylamine  (ISO)
nefazodone  (ISO)
nimesulide  (ISO)
oxaliplatin  (ISO)
ozone  (EXP)
paclitaxel  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
permethrin  (ISO)
phenobarbital  (ISO)
pirinixic acid  (EXP,ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
sevoflurane  (ISO)
silicon dioxide  (EXP)
sodium arsenate  (EXP)
sodium arsenite  (EXP)
sodium atom  (ISO)
sodium dichromate  (EXP,ISO)
succimer  (EXP)
testosterone  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (ISO)
toluene  (ISO)
topotecan  (ISO)
tributylstannane  (EXP)
trovafloxacin  (EXP)
tunicamycin  (EXP)
uridine  (ISO)
ursodeoxycholic acid  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10721696   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12671064   PMID:14681479   PMID:16141072   PMID:16141073   PMID:16828706   PMID:17013559  
PMID:20421393   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22492015   PMID:29595077   PMID:37159505  


Genomics

Comparative Map Data
Slc28a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392122,256,836 - 122,291,633 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2122,256,958 - 122,291,618 (+)EnsemblGRCm39 Ensembl
GRCm382122,426,357 - 122,461,152 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2122,426,477 - 122,461,137 (+)EnsemblGRCm38mm10GRCm38
MGSCv372122,252,213 - 122,286,866 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362122,117,918 - 122,152,571 (+)NCBIMGSCv36mm8
Celera2123,576,831 - 123,613,534 (+)NCBICelera
Cytogenetic Map2E5NCBI
cM Map260.63NCBI
SLC28A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381545,252,234 - 45,277,846 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1545,252,234 - 45,277,846 (+)EnsemblGRCh38hg38GRCh38
GRCh371545,544,432 - 45,570,044 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361543,331,726 - 43,355,425 (+)NCBINCBI36Build 36hg18NCBI36
Build 341543,331,725 - 43,355,425NCBI
Celera1522,435,715 - 22,459,420 (+)NCBICelera
Cytogenetic Map15q21.1NCBI
HuRef1522,368,444 - 22,392,157 (+)NCBIHuRef
CHM1_11545,662,894 - 45,686,614 (+)NCBICHM1_1
T2T-CHM13v2.01543,060,158 - 43,086,086 (+)NCBIT2T-CHM13v2.0
Slc28a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83129,778,425 - 129,841,292 (+)NCBIGRCr8
mRatBN7.23109,324,815 - 109,387,702 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3109,366,996 - 109,387,702 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3113,039,238 - 113,060,743 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03121,634,754 - 121,656,259 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03119,295,132 - 119,316,637 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03114,355,003 - 114,647,382 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3114,355,798 - 114,647,382 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03120,897,082 - 120,921,371 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43109,350,531 - 109,372,027 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13109,256,103 - 109,277,600 (-)NCBI
Celera3108,262,866 - 108,284,103 (+)NCBICelera
Cytogenetic Map3q35NCBI
Slc28a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554098,144,304 - 8,175,360 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554098,145,723 - 8,175,256 (-)NCBIChiLan1.0ChiLan1.0
SLC28A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21634,491,976 - 34,519,267 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11538,670,150 - 38,697,435 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01524,199,846 - 24,223,378 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11542,554,204 - 42,577,891 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1542,554,142 - 42,578,096 (+)Ensemblpanpan1.1panPan2
Slc28a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864090,088,338 - 90,119,863 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364717,937,490 - 7,967,568 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364717,937,490 - 7,967,568 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC28A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1126,472,525 - 126,511,095 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11126,472,500 - 126,511,207 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21141,072,725 - 141,110,169 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC28A2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12637,927,200 - 37,956,729 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666048103,107,096 - 103,134,707 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc28a2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473113,998,505 - 14,025,732 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473113,999,029 - 14,051,964 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc28a2
960 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:634
Count of miRNA genes:242
Interacting mature miRNAs:252
Transcripts:ENSMUST00000028652, ENSMUST00000110524, ENSMUST00000110525, ENSMUST00000139850, ENSMUST00000153848
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
11528549Sluc31_msusceptibility to lung cancer 31 (mouse)274524117129213005Mouse
4141155Plast2b_mplasma plant sterol 2b (mouse)Not determined284013198148522175Mouse
10412082Hylaq1_mHyperlocomotor activity related QTL 1 (mouse)Not determined284013198148667470Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
1301098Cd8mts3_mCD8 memory T cell subset 3 (mouse)Not determined291089974125090104Mouse
1301909Smdq2_msegregation of mitochondrial DNA QTL 2 (mouse)Not determined292778465126778607Mouse
27226761Feml18_mfemur length 18, 16 week (mouse)294230345154241920Mouse
11049569Lmr28d_mleishmaniasis resistance 28d (mouse)297123370131123532Mouse
11049568Lmr28c_mleishmaniasis resistance 28c (mouse)297123370131123532Mouse
12904935Edlmmq2_mextensor digitorum longus muscle mass QTL 2 (mouse)297210364131210364Mouse
12904954Gmmq2_mgastrocnemius muscle mass QTL 2 (mouse)297210364131210364Mouse
4141802Ignpq1_mIgA nephropathy QTL 1 (mouse)Not determined2100824060134824269Mouse
1302203Gvhd3_mgraft-versus host disease 3 (mouse)Not determined2100942930134943090Mouse
1301330Tbbmd2_mtotal body bone mineral density 2 (mouse)Not determined2100942930134943090Mouse
1302071Fembrs1_mfemur breaking strength 1 (mouse)Not determined2100942930134943090Mouse
27226788Feml13_mfemur length 13, 10 week (mouse)2102630345159941920Mouse
11041906Lmr28a_mleishmaniasis resistance 28a (mouse)2103095716129213005Mouse
11038702Ltpr2_mLeishmania tropica response 2 (mouse)2103095716167212356Mouse
1301825Pbrgcsf1_mperipheral blood stem cell response to granulocyte colony stimulating factor 1 (mouse)Not determined2106233580140233729Mouse
10043875Bw25_mbody weight QTL 25 (mouse)Not determined2107255676141255676Mouse
1301087Bbaa15_mB.burgdorferi-associated arthritis 15 (mouse)Not determined2110489658144489807Mouse
10045885Cplaq15_mcircadian period of locomotor activity 15 (mouse)Not determined2110916118154354667Mouse
1558990Skmw9_mskeletal muscle weight 9 (mouse)Not determined2111173704145173821Mouse
1300793Pcfm2_mperiosteal circumference and femur length 2 (mouse)Not determined2111173704145173821Mouse
1301905Lgth2_mbody length 2 (mouse)Not determined2111173704145173821Mouse
1301755Hrq1_mheart rate quantitative locus 1 (mouse)Not determined2111173704145173821Mouse
1301201Chab1_mcholesterol absorption 1 (mouse)Not determined2111551028145551163Mouse
1302033Nsv1_mNeuroadapted Sindbis viral RNA level 1 (mouse)Not determined2111623386145623526Mouse
1300798Actre3_mactivity response to ethanol 3 (mouse)Not determined2112024987128173821Mouse
1301415Actre4_mactivity response to ethanol 4 (mouse)Not determined2112024987128173821Mouse
11039520Ltpr2h_mLeishmania tropica response 2h (mouse)2112212746146213005Mouse
11038699Ltpr2b_mLeishmania tropica response 2b (mouse)2112212746146213005Mouse
11038700Ltpr2a_mLeishmania tropica response 2a (mouse)2112212746146213005Mouse
1301029T2dm3_mtype 2 diabetes mellitus 3 (mouse)Not determined2114288075132714157Mouse
11039521Ltpr2g_mLeishmania tropica response 2g (mouse)2115212857149212994Mouse
11038696Ltpr2f_mLeishmania tropica response 2f (mouse)2115212857149212994Mouse
13506762Tbvq2_mtrabecular bone volume QTL 2 (mouse)2115430481124741920Mouse
1301295Prdt1_mprion disease incubation time 1 (mouse)Not determined2116077623150077741Mouse
1558881Ses7_msalmonella enteritidis susceptibility 7 (mouse)Not determined2116306330150306474Mouse
1301618Bglu1_mblood glucose level 1 (mouse)Not determined2117942930174324863Mouse
12904007Cfq7_mconditioned fear QTL 7 (mouse)2118356772125048872Mouse
12910795Pwbwq5_mpost-weaning body weight QTL 5 (mouse)2118589253160611165Mouse
12910799Pwgrq2_mpre-weaning growth rate QTL 2 (mouse)2118589253160611165Mouse
12910812Pwgrq1_mpre-weaning growth rate QTL 1 (mouse)2118589253160611165Mouse
12910814Pwbwq1_mpre-weaning body weight QTL 1 (mouse)2118589253160611165Mouse
1300712El2_mepilepsy 2 (mouse)Not determined2122207146142532135Mouse

Markers in Region
BB152493  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382122,527,790 - 122,527,872UniSTSGRCm38
GRCm382122,460,878 - 122,460,960UniSTSGRCm38
MGSCv372122,353,526 - 122,353,608UniSTSGRCm37
MGSCv372122,286,614 - 122,286,696UniSTSGRCm37
Celera2123,691,240 - 123,691,322UniSTS
Celera2123,613,283 - 123,613,365UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map2E3UniSTS
Whitehead/MRC_RH21537.41UniSTS
Slc28a2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2E5UniSTS
Cytogenetic Map2E3UniSTS
cM Map2 UniSTS
Slc28a2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2E3UniSTS
Cytogenetic Map2E5UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001356532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001379459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001379460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_172980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011239577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB485921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF079853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL844566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC055376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE132919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000028652   ⟹   ENSMUSP00000028652
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2122,270,228 - 122,291,611 (+)Ensembl
GRCm38.p6 Ensembl2122,439,747 - 122,461,130 (+)Ensembl
RefSeq Acc Id: ENSMUST00000110524   ⟹   ENSMUSP00000106153
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2122,271,244 - 122,291,614 (+)Ensembl
GRCm38.p6 Ensembl2122,440,763 - 122,461,133 (+)Ensembl
RefSeq Acc Id: ENSMUST00000110525   ⟹   ENSMUSP00000106154
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2122,256,958 - 122,291,618 (+)Ensembl
GRCm38.p6 Ensembl2122,426,477 - 122,461,137 (+)Ensembl
RefSeq Acc Id: ENSMUST00000139850
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2122,256,975 - 122,271,450 (+)Ensembl
GRCm38.p6 Ensembl2122,426,494 - 122,440,969 (+)Ensembl
RefSeq Acc Id: ENSMUST00000153848
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2122,286,880 - 122,291,032 (+)Ensembl
GRCm38.p6 Ensembl2122,456,399 - 122,460,551 (+)Ensembl
RefSeq Acc Id: NM_001356532   ⟹   NP_001343461
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392122,256,916 - 122,291,614 (+)NCBI
GRCm382122,426,435 - 122,461,133 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001379459   ⟹   NP_001366388
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392122,256,916 - 122,291,614 (+)NCBI
GRCm382122,426,435 - 122,461,133 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001379460   ⟹   NP_001366389
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392122,256,916 - 122,291,614 (+)NCBI
GRCm382122,426,435 - 122,461,133 (+)NCBI
Sequence:
RefSeq Acc Id: NM_172980   ⟹   NP_766568
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392122,256,916 - 122,291,614 (+)NCBI
GRCm382122,426,435 - 122,461,133 (+)NCBI
MGSCv372122,252,213 - 122,286,866 (+)RGD
Celera2123,576,831 - 123,613,534 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011239577   ⟹   XP_011237879
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392122,270,701 - 122,288,449 (+)NCBI
GRCm382122,440,225 - 122,457,907 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036162242   ⟹   XP_036018135
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392122,270,705 - 122,291,633 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036162243   ⟹   XP_036018136
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392122,256,836 - 122,291,633 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036162244   ⟹   XP_036018137
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392122,272,044 - 122,291,633 (+)NCBI
Sequence:
RefSeq Acc Id: NP_766568   ⟸   NM_172980
- UniProtKB: Q8BJP1 (UniProtKB/Swiss-Prot),   O88627 (UniProtKB/Swiss-Prot),   Q7TMQ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011237879   ⟸   XM_011239577
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: NP_001343461   ⟸   NM_001356532
- UniProtKB: O88627 (UniProtKB/Swiss-Prot),   Q8BJP1 (UniProtKB/Swiss-Prot),   Q7TMQ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001366388   ⟸   NM_001379459
- UniProtKB: O88627 (UniProtKB/Swiss-Prot),   Q8BJP1 (UniProtKB/Swiss-Prot),   Q7TMQ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001366389   ⟸   NM_001379460
- UniProtKB: O88627 (UniProtKB/Swiss-Prot),   Q8BJP1 (UniProtKB/Swiss-Prot),   Q7TMQ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000106153   ⟸   ENSMUST00000110524
RefSeq Acc Id: ENSMUSP00000106154   ⟸   ENSMUST00000110525
RefSeq Acc Id: ENSMUSP00000028652   ⟸   ENSMUST00000028652
RefSeq Acc Id: XP_036018136   ⟸   XM_036162243
- Peptide Label: isoform X1
- UniProtKB: O88627 (UniProtKB/Swiss-Prot),   Q8BJP1 (UniProtKB/Swiss-Prot),   Q7TMQ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036018135   ⟸   XM_036162242
- Peptide Label: isoform X1
- UniProtKB: O88627 (UniProtKB/Swiss-Prot),   Q8BJP1 (UniProtKB/Swiss-Prot),   Q7TMQ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036018137   ⟸   XM_036162244
- Peptide Label: isoform X2
- UniProtKB: Q7TMQ0 (UniProtKB/TrEMBL)
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O88627-F1-model_v2 AlphaFold O88627 1-660 view protein structure

Promoters
RGD ID:6832750
Promoter ID:MM_KWN:31474
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:ENSMUST00000110526
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362122,267,134 - 122,267,634 (+)MPROMDB
RGD ID:6878520
Promoter ID:EPDNEW_M2711
Type:initiation region
Name:Slc28a2_1
Description:Mus musculus solute carrier family 28 (sodium-coupled nucleosidetransporter), member 2 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2712  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382122,426,410 - 122,426,470EPDNEW
RGD ID:6878522
Promoter ID:EPDNEW_M2712
Type:multiple initiation site
Name:Slc28a2_2
Description:Mus musculus solute carrier family 28 (sodium-coupled nucleosidetransporter), member 2 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2711  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382122,439,782 - 122,439,842EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1913105 AgrOrtholog
Ensembl Genes ENSMUSG00000027219 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000028652.12 UniProtKB/Swiss-Prot
  ENSMUST00000110524 ENTREZGENE
  ENSMUST00000110524.2 UniProtKB/Swiss-Prot
  ENSMUST00000110525 ENTREZGENE
  ENSMUST00000110525.8 UniProtKB/Swiss-Prot
InterPro C_nuclsd_transpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C_nuclsd_transpt_met_bac UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CNT_C_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CNT_N_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Gate_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:269346 UniProtKB/Swiss-Prot
MGD MGI:1913105 ENTREZGENE
NCBI Gene 269346 ENTREZGENE
PANTHER PTHR10590 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10590:SF11 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Gate UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleos_tra2_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleos_tra2_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB SLC28A2 RGD
PhenoGen Slc28a2 PhenoGen
UniProt C1PHX7_MOUSE UniProtKB/TrEMBL
  O88627 ENTREZGENE
  Q7TMQ0 ENTREZGENE, UniProtKB/TrEMBL
  Q8BJP1 ENTREZGENE
  S28A2_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q8BJP1 UniProtKB/Swiss-Prot