Arf3 (ADP-ribosylation factor 3) - Rat Genome Database

Name: Arf3
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Arf3 (ADP-ribosylation factor 3) Rattus norvegicus

Analyze

Symbol:

Arf3

Name:

ADP-ribosylation factor 3

RGD ID:

621273

Description:

Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to be located in Golgi apparatus. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human ARF3 (ADP ribosylation factor 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2-ethoxyethanol; 2-methoxyethanol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Ac1-253; ADP-ribosylation factor 3-like; liver regeneration-related protein LRRG202; LOC100912045

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ARF3 (ADP ribosylation factor 3)	HGNC	HomoloGene, Inparanoid, NCBI, Panther, PhylomeDB
Mus musculus (house mouse):	Arf3 (ADP-ribosylation factor 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Arf3 (ADP ribosylation factor 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ARF3 (ADP ribosylation factor 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ARF3 (ADP ribosylation factor 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Arf3 (ADP ribosylation factor 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ARF3 (ADP ribosylation factor 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ARF3 (ADP ribosylation factor 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Arf3 (ADP ribosylation factor 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	FKBP11 (FKBP prolyl isomerase 11)	HGNC	OrthoDB
Homo sapiens (human):	ARF1 (ADP ribosylation factor 1)	HGNC	OrthoDB
Alliance orthologs ³
Homo sapiens (human):	ARF3 (ADP ribosylation factor 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Arf3 (ADP-ribosylation factor 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	arf3a (ADP-ribosylation factor 3a)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|PANTHER)
Danio rerio (zebrafish):	arf3b (ADP-ribosylation factor 3b)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	ARF1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	ARF2	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Arf79F	Alliance	DIOPT (Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Caenorhabditis elegans (roundworm):	arf-1.2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	arf3	Alliance	DIOPT (InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	131,765,039 - 131,792,075 (-)	NCBI		GRCr8
mRatBN7.2	7	129,886,082 - 129,912,022 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	129,886,082 - 129,912,002 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	131,692,998 - 131,718,928 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	133,918,546 - 133,944,477 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	133,831,057 - 133,856,987 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	140,412,463 - 140,438,751 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	140,398,199 - 140,437,467 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	114,922,626 - 114,948,566 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	137,505,200 - 137,510,262 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	137,581,639 - 137,586,699 (-)	NCBI
Celera	7	126,375,409 - 126,380,467 (-)	NCBI		Celera
Cytogenetic Map	7	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

congenital heart disease (ISO)

dystonia (ISO)

epilepsy (ISO)

Funnel Chest (ISO)

genetic disease (ISO)

intellectual disability (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(S)-nicotine (ISO)

1,2-dimethylhydrazine (ISO)

1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (ISO)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-ethoxyethanol (EXP)

2-methoxyethanol (EXP)

3,3',5,5'-tetrabromobisphenol A (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (EXP)

4-vinylcyclohexene dioxide (ISO)

5-fluorouracil (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP,ISO)

butanal (ISO)

carbon nanotube (ISO)

clobetasol (ISO)

cobalt dichloride (ISO)

crocidolite asbestos (ISO)

CU-O LINKAGE (ISO)

dexamethasone (ISO)

dextran sulfate (ISO)

dibutyl phthalate (EXP)

dichlorine (EXP)

doxorubicin (ISO)

ethanol (ISO)

FR900359 (ISO)

gamma-tocopherol (ISO)

glyphosate (ISO)

haloperidol (EXP)

hydrogen sulfide (ISO)

indometacin (ISO)

lead(0) (ISO)

maneb (ISO)

methoxychlor (EXP)

miconazole (ISO)

N-methyl-4-phenylpyridinium (ISO)

nickel atom (ISO)

nicotine (ISO)

ozone (EXP)

paclitaxel (ISO)

paracetamol (ISO)

paraquat (ISO)

pentachlorophenol (ISO)

perfluorooctane-1-sulfonic acid (EXP)

pirinixic acid (ISO)

quercetin (ISO)

Salinomycin (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

thapsigargin (EXP,ISO)

tocopherol (ISO)

triptonide (ISO)

valproic acid (ISO)

venlafaxine hydrochloride (EXP)

vinclozolin (EXP)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

intracellular protein transport (IBA,IEA)

protein transport (IEA)

retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum (ISO)

vesicle-mediated transport (IBA,IEA)

Cellular Component

Golgi apparatus (IEA,ISO)

perinuclear region of cytoplasm (IEA)

plasma membrane (IBA,IEA)

Molecular Function

GTP binding (IEA)

GTPase activity (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
3.	Interspecies relationships among ADP-ribosylation factors (ARFs): evidence of evolutionary pressure to maintain individual identities.	Price SR, etal., Mol Cell Biochem 1996 Jun 7;159(1):15-23.
4.	GOA pipeline	RGD automated data pipeline
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8947846	PMID:12477932	PMID:15489334	PMID:18504258	PMID:20458337	PMID:23376485	PMID:23533145	PMID:24625528	PMID:24768165	PMID:26446845	PMID:32357304

Genomics

Comparative Map Data

Arf3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	131,765,039 - 131,792,075 (-)	NCBI		GRCr8
mRatBN7.2	7	129,886,082 - 129,912,022 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	129,886,082 - 129,912,002 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	131,692,998 - 131,718,928 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	133,918,546 - 133,944,477 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	133,831,057 - 133,856,987 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	140,412,463 - 140,438,751 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	140,398,199 - 140,437,467 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	114,922,626 - 114,948,566 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	137,505,200 - 137,510,262 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	137,581,639 - 137,586,699 (-)	NCBI
Celera	7	126,375,409 - 126,380,467 (-)	NCBI		Celera
Cytogenetic Map	7	q36	NCBI

ARF3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	48,935,723 - 48,957,487 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	48,935,723 - 48,957,487 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	49,329,506 - 49,351,270 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	47,616,259 - 47,637,577 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	47,616,258 - 47,637,577	NCBI
Celera	12	48,124,473 - 48,145,734 (-)	NCBI		Celera
Cytogenetic Map	12	q13.12	NCBI
HuRef	12	46,361,992 - 46,383,255 (-)	NCBI		HuRef
CHM1_1	12	49,295,794 - 49,317,048 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	48,892,453 - 48,919,687 (-)	NCBI		T2T-CHM13v2.0

Arf3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	98,635,505 - 98,660,999 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	98,634,515 - 98,661,095 (-)	Ensembl		GRCm39 Ensembl
GRCm38	15	98,737,624 - 98,763,118 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	98,736,634 - 98,763,214 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	98,568,057 - 98,593,549 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	98,565,660 - 98,591,152 (-)	NCBI		MGSCv36	mm8
Celera	15	100,886,420 - 100,912,378 (-)	NCBI		Celera
Cytogenetic Map	15	F1	NCBI
cM Map	15	54.65	NCBI

Arf3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955500	7,756,936 - 7,761,953 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955500	7,756,936 - 7,761,953 (-)	NCBI	ChiLan1.0	ChiLan1.0

ARF3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	45,227,595 - 45,248,869 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	45,224,253 - 45,245,630 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	39,793,228 - 39,814,571 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	40,673,527 - 40,694,594 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	40,674,277 - 40,694,594 (+)	Ensembl	panpan1.1		panPan2

ARF3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	5,610,078 - 5,629,169 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	40,628,524 - 40,647,729 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	5,660,969 - 5,680,166 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	5,660,397 - 5,680,634 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	5,624,911 - 5,644,102 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	5,614,955 - 5,634,165 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	41,020,824 - 41,040,030 (-)	NCBI		UU_Cfam_GSD_1.0

Arf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	66,401,454 - 66,422,545 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936512	6,742,285 - 6,763,490 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936512	6,742,285 - 6,763,390 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ARF3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	14,975,630 - 14,978,446 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	14,973,477 - 14,993,016 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	15,386,802 - 15,388,246 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ARF3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	45,175,372 - 45,197,582 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	45,178,111 - 45,196,858 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	200,946,327 - 200,968,559 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Arf3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624816	3,231,138 - 3,252,248 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624816	3,231,153 - 3,249,724 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Arf3
66 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	1525
Count of miRNA genes:	367
Interacting mature miRNAs:	538
Transcripts:	ENSRNOT00000044558
Prediction methods:	Microtar, Miranda, Pita, Pita,Microtar, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300179	Kidm5	Kidney mass QTL 5	3.51		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	7	43747012	135012528	Rat
70173	Niddm19	Non-insulin dependent diabetes mellitus QTL 19	4.33	0.00005	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	64002457	135012528	Rat
634331	Pia17	Pristane induced arthritis QTL 17	4.7		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	7	73829340	130221005	Rat
1358891	Bp265	Blood pressure QTL 265	2.21		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	83591953	134666232	Rat
1358914	Bp266	Blood pressure QTL 266			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	83591953	134666232	Rat
1558655	Swd4	Spike wave discharge measurement QTL 4	3.68	0.0002	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge severity grade (CMO:0001988)	7	86983365	131983365	Rat
1549899	Stresp8	Stress response QTL 8	4.37	0.0008	stress-related behavior trait (VT:0010451)	defensive burying duration (CMO:0001961)	7	90482196	135012528	Rat
2299163	Iddm34	Insulin dependent diabetes mellitus QTL 34	2.71		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	7	91281130	135012528	Rat
731176	Glom5	Glomerulus QTL 5	2.5	0.0035	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	7	96670164	135012528	Rat
1331731	Bp216	Blood pressure QTL 216	2.851		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	102297359	133492884	Rat
731174	Uae23	Urinary albumin excretion QTL 23	2.4	0.0042	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	7	104603555	135012528	Rat
2306821	Bp335	Blood pressure QTL 335		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	106571501	135012528	Rat
631663	Bw6	Body weight QTL 6	3.4		body mass (VT:0001259)	body weight (CMO:0000012)	7	111075573	134976056	Rat
1300112	Bp183	Blood pressure QTL 183	3.51		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	111182207	135012528	Rat
1331748	Bp215	Blood pressure QTL 215	4.043		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	112308254	133492884	Rat
1357339	Stl14	Serum triglyceride level QTL 14	3.45	0.0001	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	7	112729683	133492707	Rat
1354582	Stl11	Serum triglyceride level QTL 11	3.42		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	7	119513385	135012528	Rat

Markers in Region

RH139505

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	129,886,250 - 129,886,433 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	140,412,632 - 140,412,814	NCBI	Rnor6.0
Rnor_5.0	X	114,922,795 - 114,922,977	UniSTS	Rnor5.0
RGSC_v3.4	7	137,505,364 - 137,505,546	UniSTS	RGSC3.4
Celera	7	126,375,573 - 126,375,755	UniSTS
RH 3.4 Map	7	1076.9	UniSTS
Cytogenetic Map	7	q36	UniSTS

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_080904	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594635	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594636	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010052929	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010052930	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010052931	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC114446	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY325223	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC088865	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ224607	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	L12382	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000077884 ⟹ ENSRNOP00000069538

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	129,886,082 - 129,912,002 (-)	Ensembl
Rnor_6.0 Ensembl	7	140,412,469 - 140,417,530 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000083955 ⟹ ENSRNOP00000072158

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	7	140,398,253 - 140,401,686 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000087176 ⟹ ENSRNOP00000069384

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	7	140,415,138 - 140,418,132 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000087181 ⟹ ENSRNOP00000075002

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	7	140,398,199 - 140,437,467 (-)	Ensembl

RefSeq Acc Id:

NM_080904 ⟹ NP_543180

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	131,765,039 - 131,790,979 (-)	NCBI
mRatBN7.2	7	129,886,082 - 129,912,022 (-)	NCBI
Rnor_6.0	7	140,412,468 - 140,417,530 (-)	NCBI
Rnor_5.0	X	114,922,626 - 114,948,566 (-)	NCBI
RGSC_v3.4	7	137,505,200 - 137,510,262 (-)	RGD
Celera	7	126,375,409 - 126,380,467 (-)	RGD

Sequence:

show sequence

CAGGGACCAGGCTAAAACCAGATTACCACTGCCCCTACCTGGGCCCTGTTGACTTAAAGCAGCC
ACTGTAATCATGGGCAATATCTTTGGGAACCTTCTGAAGAGCCTGATCGGGAAGAAGGAGATGC
GCATCCTGATGGTGGGCCTGGATGCTGCAGGAAAGACCACCATCCTCTATAAGCTGAAGCTTGG
CGAGATTGTTACCACCATTCCCACCATCGGGTTTAATGTGGAGACAGTGGAATATAAGAATATC
AGCTTCACAGTATGGGACGTAGGTGGCCAGGACAAGATTCGGCCCCTCTGGAGACACTACTTCC
AGAATACCCAAGGCTTGATATTTGTGGTTGACAGCAATGACCGGGAGCGAGTGAACGAGGCCCG
GGAAGAGCTGATGAGGATGCTGGCGGAGGATGAGCTCCGGGATGCTGTGCTGCTTGTGTTTGCA
AACAAACAGGATTTGCCGAATGCTATGAATGCTGCTGAGATCACAGACAAGCTGGGCCTGCACT
CTCTGCGCCACCGCAATTGGTACATTCAGGCCACCTGTGCCACCAGCGGGGACGGGCTCTATGA
AGGCTTGGACTGGCTGGCCAATCAGCTCAAAAACAAGAAGTGAGAGCCAGGCAGCCCTCTCTGA
CTACCCCACCCACTCCTGAAACATACCTGTTGTCTCCTTACCCCAATTTCCCCCTTTCTTCCTC
ATGAAAGTGTGGCCAAGGTCCTGGGTGTCATGTCCACTGCCCAGCAAGCGCCTTTCCTCCTGAG
CCTCCCGCCCCCTTCCTTGTGCACTGACACGGTCAGCCCCCACTGCTGTCCTGATGATGAGTCA
TTCCAATCTACTGGGTTTAAACCAGAAGGAGGCTGTTATGGTTTCGTGGGGTCCCCCTTGGTTT
CAGGAGGAAGAGTGGGGACGTTTCCTCTGTTTGCTGTTTGGCACTGGTTGCTGTGCTCTTGGCA
TCTGAGTCCCTTCCCTGAGTCCCTGGCCACTCTCTTCCCTGTCTTCCTTTCCTTCTACACCCTC
CTATTCTACATGGACATTGGACATTGCACGGGCCTCTCTGTGTGTGCGTGCATGTGTGCGCCTG
TATATATGTGTATAGAGAGATATATCTGTGGGGTCAGGGGAGGGAGTGGAGCGCAGCTCAGGGC
TTGCAGCCAGGACACTGCACACTAGACCCTGTCACCTGCCCTTCTGTGTTGGTGAGAGAAGGGG
ATGTGGGTGAGTCCCATTGCTTTCCTCTGTGGGTGAGAGAAGGGGATGTGGGTGAGTCCCATTG
CTTTCCTCTGCAGGCGGCATTCCTGGGTGTTAGGAGAGACTGAGCTCCAACAGTCATCTGTCTT
CTCTTCCCTTCTCCACCCTTATGAGCACACGAAATGGCATTGATCTCTGGGTCACTGTTCCAAG
GGGATGCCATCCTCCTCTGCTTCATTAGTGGGAAGGAAAGGAGCCCACTCACGTTGTCAGTCTA
GTCAGGAGTGTTCAGTTGCTCCTCTCCCATCAACCTCACTTCTGCTCCCCAGGAACTCGAGGGA
GGTGGCTTAGTGGGACCTGATGTATTGGGGCCTGCATGTTGGGGGGTGGACAGCGGTTTAGGGA
AGGAAGGCCCAGACTTTCCATCTTACTCTTGTACCCATGGAGCAGGCCTGTTCCTGCCTTTGGG
CCTTGGGGGCTGGGTGGTTCTGTCTGTCAGAGATCCCTCAGTAGATCTGCTGACCCGATGAGCA
CTGACTAAGTGGAGTAATGACAAGGAAGCCATGGATTGGGGTGACATAGCCAACCTCAGTGTCA
CCTCTGTTCTCCAGTCTAGTCTCTGTCTAGTGCAGGACCAGACGAGATGAGCTTCTGCTGTGCT
CACGGTCCTGTCCCCTCCTCTCTGGCAGTGTTCCCCAGTCCTCAACCTGTCCCTGGATAGGATG
GTGGGGTGGAATGGATGCCGTAGGACCCTGTACGGCTGGGGCTGGAACCCTGATCTTCAGGGCC
TTCCCTCAATCATTCTCTGCCTGTTCAGCTGCTGCTGCAGGTCTGTAGAGGGCGCTTGTTGCAG
AAGCTTTGACCTGGGTCCTGACTTATCACTGCACTGAAGCTGCGGCTGTTCTGTGGGCTCCTGT
GTGTGCTGGCTGCGCCCTGAGCTCCAAAACAGCTGCCCATATCCTGTCTGCTAAGGTCAGGACC
CTGGGCTCTCTGCAGCATGGCCAACGGACCCTTCCCAGAGGGCTGTTCTGAGTTGTACTTGATG
GCCAGGTTTCCTGCCACCTTTGACTTCTACAGCAGGCAGATAGGTTCCCAGCTTACTGTGAGAA
TGTGTGCTTGTGCAAGGTTCCAGGATATGTCTCAGTCAGGTAGTGCTGTGCTACCCCAGATACC
ACACCATGGCGGGGTGTGCTCTAGACCTGGTGTCCATGTGTGTGTCCGTGCGTGAGTGTGTGCG
TGCCATGTGTGAGTGTGTGATCTCTACAGGGGGTGCCAGGGGTTCTGTTTCATTTTCAATGGGT
TCCTTCCATTCCCAACACTGCGCTCTTCTCTTTACAGTTCCTGAGTCTTCCCCTGTCGCTCTCA
TTCTCTCTGCCGTTTTCAAGTCACCCCCTCTGTTGCTGCTGTGAGCGCCTGTTTGCCTTTTCGG
TTGACTCACCACTTTGCCTGTTTGTTTTTGATTTAGTTTTTGTCTTCTATCTGATTTTCTACTC
TCTCTTTGCTTTGAGGTTGGTGAGGACTTTGCCTTTTACTCTGCCACGCTTTCTGACCTTTCCT
ACTTAGATGCTAGTTCCAGATAAGTTGTGTACATTGCAGACTTCATTCCACTACTGCACCCCTT
ACCACAGCATCTTCTTTTTCTCCACCTCCTGGGACCAACCTAAGGCTGAGCAGGCTGAAGTAGC
CTTGAGTGTTGCCTTGGTGCCTGCTGCTCCAGATATGTCCAGCAGAGGGCAGTGACATCTTGGT
AACATCTGGCTTTGTGGTGGGGTTGGGGAGCTTTCTACATTCCCTAATCAGTCTTTAAGGGTTG
GGCATTTCATCCCATTTCTGTGAACCCCTCTCTTGCTTTTCTCAAGTTTAATTTTTGATCTTGT
TCTACCTTTCTTTTGTGGGGACTCTCCCTTCCCTCCACCTCCAGAATTTATGGTGTTACAGTGG
TATCTGCAGTTCTGAAGTGGGTTTTTTCTTTTTGCTGTCTCTGGAATGTAGACTGTACGTGTTT
AATAACTTGCCTTCTCTATCCTTGCTCAGAAATGTGGATAATGCAATGGCTGTGACCCTGGTTG
GAAATTAAACTTGTTTTATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGG

hide sequence

RefSeq Acc Id:

XM_017594635 ⟹ XP_017450124

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	131,765,039 - 131,792,075 (-)	NCBI
mRatBN7.2	7	129,886,082 - 129,911,968 (-)	NCBI
Rnor_6.0	7	140,412,463 - 140,438,751 (-)	NCBI

Sequence:

show sequence

AGGATAGGTTACAGCAACCGTTTTCGCTATCCATACCCCACTGAGGCTCTAAGAAACCCCAGAG
ACTCCATGGCCCGAGCCTTGTGGCCAGGGCAGCCAGAACGTGGCAAGGCCCCGGAGCTAGCTCG
GGAGCCTCACCTCTGTGCCCGCAGCCTCCTCTCCACACCGTGCCTCCGGCTCCTCCAGCCCCCA
CACAGGCCCCCGCCTAGACTCAGCTTCAGCACCGGCTGCTTTTGCTGCAGCCGCTGCCATGGTG
ATGGGTCTCGCGAGAACTGCCGCTCGCTAGCGCGCACTTCTCGCGCGATCGTGGAGGTGGGAAG
TATCCCGGGCTGGGGGTGGGTGTTCGCCGCACAGCTCCTGTCGCCGTCGCGGCTTCCGGTGCTA
GGTGGAGGGAGGGCAGGAGGGAGCCGCCGGGAGCGGGCCAGCGGACCAGCTACGCCGCGGTCGG
CTTGCGGAGCGGGAGGCAGCGGCCGGAGAGCCAGGCGGAACCTGCGGGGGCGGAGGCGGCGGTG
GCAGCCGGGGCGCAGAGAGCAGGAACAGGAAGTACCAGGATTCCCGGAACAGAAAATGAAGCCT
TTGCTTACGCCAGTCCTTTGAAGGAAGGAGGGGGAGGTGGGGAGGATCAAGCCCTCCATACCAG
GGACCAGGCTAAAACCAGATTACCACTGCCCCTACCTGGGCCCTGTTGACTTAAAGCAGCCACT
GTAATCATGGGCAATATCTTTGGGAACCTTCTGAAGAGCCTGATCGGGAAGAAGGAGATGCGCA
TCCTGATGGTGGGCCTGGATGCTGCAGGAAAGACCACCATCCTCTATAAGCTGAAGCTTGGCGA
GATTGTTACCACCATTCCCACCATCGGGTTTAATGTGGAGACAGTGGAATATAAGAATATCAGC
TTCACAGTATGGGACGTAGGTGGCCAGGACAAGATTCGGCCCCTCTGGAGACACTACTTCCAGA
ATACCCAAGGCTTGATATTTGTGGTTGACAGCAATGACCGGGAGCGAGTGAACGAGGCCCGGGA
AGAGCTGATGAGGATGCTGGCGGAGGATGAGCTCCGGGATGCTGTGCTGCTTGTGTTTGCAAAC
AAACAGGATTTGCCGAATGCTATGAATGCTGCTGAGATCACAGACAAGCTGGGCCTGCACTCTC
TGCGCCACCGCAATTGGTACATTCAGGCCACCTGTGCCACCAGCGGGGACGGGCTCTATGAAGG
CTTGGACTGGCTGGCCAATCAGCTCAAAAACAAGAAGTGAGAGCCAGGCAGCCCTCTCTGACTA
CCCCACCCACTCCTGAAACATACCTGTTGTCTCCTTACCCCAATTTCCCCCTTTCTTCCTCATG
AAAGTGTGGCCAAGGTCCTGGGTGTCATGTCCACTGCCCAGCAAGCGCCTTTCCTCCTGAGCCT
CCCGCCCCCTTCCTTGTGCACTGACACGGTCAGCCCCCACTGCTGTCCTGATGATGAGTCATTC
CAATCTACTGGGTTTAAACCAGAAGGAGGCTGTTATGGTTTCGTGGGGTCCCCCTTGGTTTCAG
GAGGAAGAGTGGGGACGTTTCCTCTGTTTGCTGTTTGGCACTGGTTGCTGTGCTCTTGGCATCT
GAGTCCCTTCCCTGAGTCCCTGGCCACTCTCTTCCCTGTCTTCCTTTCCTTCTACACCCTCCTA
TTCTACATGGACATTGGACATTGCACGGGCCTCTCTGTGTGTGCGTGCATGTGTGCGCCTGTAT
ATATGTGTATAGAGAGATATATCTGTGGGGTCAGGGGAGGGAGTGGAGCGCAGCTCAGGGCTTG
CAGCCAGGACACTGCACACTAGACCCTGTCACCTGCCCTTCTGTGTTGGTGAGAGAAGGGGATG
TGGGTGAGTCCCATTGCTTTCCTCTGTGGGTGAGAGAAGGGGATGTGGGTGAGTCCCATTGCTT
TCCTCTGCAGGCGGCATTCCTGGGTGTTAGGAGAGACTGAGCTCCAACAGTCATCTGTCTTCTC
TTCCCTTCTCCACCCTTATGAGCACACGAAATGGCATTGATCTCTGGGTCACTGTTCCAAGGGG
ATGCCATCCTCCTCTGCTTCATTAGTGGGAAGGAAAGGAGCCCACTCACGTTGTCAGTCTAGTC
AGGAGTGTTCAGTTGCTCCTCTCCCATCAACCTCACTTCTGCTCCCCAGGAACTCGAGGGAGGT
GGCTTAGTGGGACCTGATGTATTGGGGCCTGCATGTTGGGGGGTGGACAGCGGTTTAGGGAAGG
AAGGCCCAGACTTTCCATCTTACTCTTGTACCCATGGAGCAGGCCTGTTCCTGCCTTTGGGCCT
TGGGGGCTGGGTGGTTCTGTCTGTCAGAGATCCCTCAGTAGATCTGCTGACCCGATGAGCACTG
ACTAAGTGGAGTAATGACAAGGAAGCCATGGATTGGGGTGACATAGCCAACCTCAGTGTCACCT
CTGTTCTCCAGTCTAGTCTCTGTCTAGTGCAGGACCAGACGAGATGAGCTTCTGCTGTGCTCAC
GGTCCTGTCCCCTCCTCTCTGGCAGTGTTCCCCAGTCCTCAACCTGTCCCTGGATAGGATGGTG
GGGTGGAATGGATGCCGTAGGACCCTGTACGGCTGGGGCTGGAACCCTGATCTTCAGGGCCTTC
CCTCAATCATTCTCTGCCTGTTCAGCTGCTGCTGCAGGTCTGTAGAGGGCGCTTGTTGCAGAAG
CTTTGACCTGGGTCCTGACTTATCACTGCACTGAAGCTGCGGCTGTTCTGTGGGCTCCTGTGTG
TGCTGGCTGCGCCCTGAGCTCCAAAACAGCTGCCCATATCCTGTCTGCTAAGGTCAGGACCCTG
GGCTCTCTGCAGCATGGCCAACGGACCCTTCCCAGAGGGCTGTTCTGAGTTGTACTTGATGGCC
AGGTTTCCTGCCACCTTTGACTTCTACAGCAGGCAGATAGGTTCCCAGCTTACTGTGAGAATGT
GTGCTTGTGCAAGGTTCCAGGATATGTCTCAGTCAGGTAGTGCTGTGCTACCCCAGATACCACA
CCATGGCGGGGTGTGCTCTAGACCTGGTGTCCATGTGTGTGTCCGTGCGTGAGTGTGTGCGTGC
CATGTGTGAGTGTGTGATCTCTACAGGGGGTGCCAGGGGTTCTGTTTCATTTTCAATGGGTTCC
TTCCATTCCCAACACTGCGCTCTTCTCTTTACAGTTCCTGAGTCTTCCCCTGTCGCTCTCATTC
TCTCTGCCGTTTTCAAGTCACCCCCTCTGTTGCTGCTGTGAGCGCCTGTTTGCCTTTTCGGTTG
ACTCACCACTTTGCCTGTTTGTTTTTGATTTAGTTTTTGTCTTCTATCTGATTTTCTACTCTCT
CTTTGCTTTGAGGTTGGTGAGGACTTTGCCTTTTACTCTGCCACGCTTTCTGACCTTTCCTACT
TAGATGCTAGTTCCAGATAAGTTGTGTACATTGCAGACTTCATTCCACTACTGCACCCCTTACC
ACAGCATCTTCTTTTTCTCCACCTCCTGGGACCAACCTAAGGCTGAGCAGGCTGAAGTAGCCTT
GAGTGTTGCCTTGGTGCCTGCTGCTCCAGATATGTCCAGCAGAGGGCAGTGACATCTTGGTAAC
ATCTGGCTTTGTGGTGGGGTTGGGGAGCTTTCTACATTCCCTAATCAGTCTTTAAGGGTTGGGC
ATTTCATCCCATTTCTGTGAACCCCTCTCTTGCTTTTCTCAAGTTTAATTTTTGATCTTGTTCT
ACCTTTCTTTTGTGGGGACTCTCCCTTCCCTCCACCTCCAGAATTTATGGTGTTACAGTGGTAT
CTGCAGTTCTGAAGTGGGTTTTTTCTTTTTGCTGTCTCTGGAATGTAGACTGTACGTGTTTAAT
AACTTGCCTTCTCTATCCTTGCTCAGAAATGTGGATAATGCAATGGCTGTGACCCTGGTTGGAA
ATTAAACTTGTTTTATGCAGCTTT

hide sequence

RefSeq Acc Id:

XM_017594636 ⟹ XP_017450125

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	131,765,039 - 131,792,075 (-)	NCBI
mRatBN7.2	7	129,886,082 - 129,911,716 (-)	NCBI
Rnor_6.0	7	140,412,463 - 140,438,157 (-)	NCBI

Sequence:

show sequence

TGGGAGCCCGAGGTCCCTCGTCGCGGTCCGCCTCTCACGGCCTGGCGAGGTGCAGGGGGCGATC
CTCGCAGAGCTGGGGACCCCAGTCCCACTCCTGCCCCCGCAGCTGAAGGACGCCGAGCTGGGGT
GGGGGCGGGGGGCGCACACGGATTTGTCCTCGGCCTCGCCCGAGGGGGCGACCTGGGCTGCAGA
GGATCAAGCCCTCCATACCAGGGACCAGGCTAAAACCAGATTACCACTGCCCCTACCTGGGCCC
TGTTGACTTAAAGCAGCCACTGTAATCATGGGCAATATCTTTGGGAACCTTCTGAAGAGCCTGA
TCGGGAAGAAGGAGATGCGCATCCTGATGGTGGGCCTGGATGCTGCAGGAAAGACCACCATCCT
CTATAAGCTGAAGCTTGGCGAGATTGTTACCACCATTCCCACCATCGGGTTTAATGTGGAGACA
GTGGAATATAAGAATATCAGCTTCACAGTATGGGACGTAGGTGGCCAGGACAAGATTCGGCCCC
TCTGGAGACACTACTTCCAGAATACCCAAGGCTTGATATTTGTGGTTGACAGCAATGACCGGGA
GCGAGTGAACGAGGCCCGGGAAGAGCTGATGAGGATGCTGGCGGAGGATGAGCTCCGGGATGCT
GTGCTGCTTGTGTTTGCAAACAAACAGGATTTGCCGAATGCTATGAATGCTGCTGAGATCACAG
ACAAGCTGGGCCTGCACTCTCTGCGCCACCGCAATTGGTACATTCAGGCCACCTGTGCCACCAG
CGGGGACGGGCTCTATGAAGGCTTGGACTGGCTGGCCAATCAGCTCAAAAACAAGAAGTGAGAG
CCAGGCAGCCCTCTCTGACTACCCCACCCACTCCTGAAACATACCTGTTGTCTCCTTACCCCAA
TTTCCCCCTTTCTTCCTCATGAAAGTGTGGCCAAGGTCCTGGGTGTCATGTCCACTGCCCAGCA
AGCGCCTTTCCTCCTGAGCCTCCCGCCCCCTTCCTTGTGCACTGACACGGTCAGCCCCCACTGC
TGTCCTGATGATGAGTCATTCCAATCTACTGGGTTTAAACCAGAAGGAGGCTGTTATGGTTTCG
TGGGGTCCCCCTTGGTTTCAGGAGGAAGAGTGGGGACGTTTCCTCTGTTTGCTGTTTGGCACTG
GTTGCTGTGCTCTTGGCATCTGAGTCCCTTCCCTGAGTCCCTGGCCACTCTCTTCCCTGTCTTC
CTTTCCTTCTACACCCTCCTATTCTACATGGACATTGGACATTGCACGGGCCTCTCTGTGTGTG
CGTGCATGTGTGCGCCTGTATATATGTGTATAGAGAGATATATCTGTGGGGTCAGGGGAGGGAG
TGGAGCGCAGCTCAGGGCTTGCAGCCAGGACACTGCACACTAGACCCTGTCACCTGCCCTTCTG
TGTTGGTGAGAGAAGGGGATGTGGGTGAGTCCCATTGCTTTCCTCTGTGGGTGAGAGAAGGGGA
TGTGGGTGAGTCCCATTGCTTTCCTCTGCAGGCGGCATTCCTGGGTGTTAGGAGAGACTGAGCT
CCAACAGTCATCTGTCTTCTCTTCCCTTCTCCACCCTTATGAGCACACGAAATGGCATTGATCT
CTGGGTCACTGTTCCAAGGGGATGCCATCCTCCTCTGCTTCATTAGTGGGAAGGAAAGGAGCCC
ACTCACGTTGTCAGTCTAGTCAGGAGTGTTCAGTTGCTCCTCTCCCATCAACCTCACTTCTGCT
CCCCAGGAACTCGAGGGAGGTGGCTTAGTGGGACCTGATGTATTGGGGCCTGCATGTTGGGGGG
TGGACAGCGGTTTAGGGAAGGAAGGCCCAGACTTTCCATCTTACTCTTGTACCCATGGAGCAGG
CCTGTTCCTGCCTTTGGGCCTTGGGGGCTGGGTGGTTCTGTCTGTCAGAGATCCCTCAGTAGAT
CTGCTGACCCGATGAGCACTGACTAAGTGGAGTAATGACAAGGAAGCCATGGATTGGGGTGACA
TAGCCAACCTCAGTGTCACCTCTGTTCTCCAGTCTAGTCTCTGTCTAGTGCAGGACCAGACGAG
ATGAGCTTCTGCTGTGCTCACGGTCCTGTCCCCTCCTCTCTGGCAGTGTTCCCCAGTCCTCAAC
CTGTCCCTGGATAGGATGGTGGGGTGGAATGGATGCCGTAGGACCCTGTACGGCTGGGGCTGGA
ACCCTGATCTTCAGGGCCTTCCCTCAATCATTCTCTGCCTGTTCAGCTGCTGCTGCAGGTCTGT
AGAGGGCGCTTGTTGCAGAAGCTTTGACCTGGGTCCTGACTTATCACTGCACTGAAGCTGCGGC
TGTTCTGTGGGCTCCTGTGTGTGCTGGCTGCGCCCTGAGCTCCAAAACAGCTGCCCATATCCTG
TCTGCTAAGGTCAGGACCCTGGGCTCTCTGCAGCATGGCCAACGGACCCTTCCCAGAGGGCTGT
TCTGAGTTGTACTTGATGGCCAGGTTTCCTGCCACCTTTGACTTCTACAGCAGGCAGATAGGTT
CCCAGCTTACTGTGAGAATGTGTGCTTGTGCAAGGTTCCAGGATATGTCTCAGTCAGGTAGTGC
TGTGCTACCCCAGATACCACACCATGGCGGGGTGTGCTCTAGACCTGGTGTCCATGTGTGTGTC
CGTGCGTGAGTGTGTGCGTGCCATGTGTGAGTGTGTGATCTCTACAGGGGGTGCCAGGGGTTCT
GTTTCATTTTCAATGGGTTCCTTCCATTCCCAACACTGCGCTCTTCTCTTTACAGTTCCTGAGT
CTTCCCCTGTCGCTCTCATTCTCTCTGCCGTTTTCAAGTCACCCCCTCTGTTGCTGCTGTGAGC
GCCTGTTTGCCTTTTCGGTTGACTCACCACTTTGCCTGTTTGTTTTTGATTTAGTTTTTGTCTT
CTATCTGATTTTCTACTCTCTCTTTGCTTTGAGGTTGGTGAGGACTTTGCCTTTTACTCTGCCA
CGCTTTCTGACCTTTCCTACTTAGATGCTAGTTCCAGATAAGTTGTGTACATTGCAGACTTCAT
TCCACTACTGCACCCCTTACCACAGCATCTTCTTTTTCTCCACCTCCTGGGACCAACCTAAGGC
TGAGCAGGCTGAAGTAGCCTTGAGTGTTGCCTTGGTGCCTGCTGCTCCAGATATGTCCAGCAGA
GGGCAGTGACATCTTGGTAACATCTGGCTTTGTGGTGGGGTTGGGGAGCTTTCTACATTCCCTA
ATCAGTCTTTAAGGGTTGGGCATTTCATCCCATTTCTGTGAACCCCTCTCTTGCTTTTCTCAAG
TTTAATTTTTGATCTTGTTCTACCTTTCTTTTGTGGGGACTCTCCCTTCCCTCCACCTCCAGAA
TTTATGGTGTTACAGTGGTATCTGCAGTTCTGAAGTGGGTTTTTTCTTTTTGCTGTCTCTGGAA
TGTAGACTGTACGTGTTTAATAACTTGCCTTCTCTATCCTTGCTCAGAAATGTGGATAATGCAA
TGGCTGTGACCCTGGTTGGAAATTAAACTTGTTTTATGCAGCTTT

hide sequence

RefSeq Acc Id:

XR_010052929

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	131,765,039 - 131,792,075 (-)	NCBI

RefSeq Acc Id:

XR_010052930

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	131,765,039 - 131,792,075 (-)	NCBI

RefSeq Acc Id:

XR_010052931

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	131,765,039 - 131,792,075 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_543180	(Get FASTA)	NCBI Sequence Viewer
	XP_017450124	(Get FASTA)	NCBI Sequence Viewer
	XP_017450125	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA40687	(Get FASTA)	NCBI Sequence Viewer
	AAH88865	(Get FASTA)	NCBI Sequence Viewer
	AAP92624	(Get FASTA)	NCBI Sequence Viewer
	EDL87037	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000069538
	ENSRNOP00000069538.1
	ENSRNOP00000077987.1
	ENSRNOP00055036989
	ENSRNOP00060010928
	ENSRNOP00065026401
GenBank Protein	P61206	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_543180 ⟸ NM_080904
- UniProtKB:	P61206 (UniProtKB/Swiss-Prot), A6KCA5 (UniProtKB/TrEMBL), A0A8I5ZKF2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFT VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQ DLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNKK hide sequence

RefSeq Acc Id:	XP_017450124 ⟸ XM_017594635
- Peptide Label:	isoform X1
- UniProtKB:	P61206 (UniProtKB/Swiss-Prot), A6KCA5 (UniProtKB/TrEMBL), A0A8I5ZKF2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFT VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQ DLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNKK hide sequence

RefSeq Acc Id:	XP_017450125 ⟸ XM_017594636
- Peptide Label:	isoform X1
- UniProtKB:	P61206 (UniProtKB/Swiss-Prot), A6KCA5 (UniProtKB/TrEMBL), A0A8I5ZKF2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFT VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQ DLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNKK hide sequence

RefSeq Acc Id:

ENSRNOP00000075002 ⟸ ENSRNOT00000087181

RefSeq Acc Id:

ENSRNOP00000069384 ⟸ ENSRNOT00000087176

RefSeq Acc Id:

ENSRNOP00000069538 ⟸ ENSRNOT00000077884

RefSeq Acc Id:

ENSRNOP00000072158 ⟸ ENSRNOT00000083955

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P61206-F1-model_v2	AlphaFold	P61206	1-181	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621273	AgrOrtholog
BioCyc Gene	G2FUF-32116	BioCyc
Ensembl Genes	ENSRNOG00000004807	UniProtKB/TrEMBL
	ENSRNOG00000054775	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOG00055026116	UniProtKB/Swiss-Prot
	ENSRNOG00060008518	UniProtKB/Swiss-Prot
	ENSRNOG00065019614	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000077884	ENTREZGENE
	ENSRNOT00000077884.2	UniProtKB/Swiss-Prot
	ENSRNOT00000113470.1	UniProtKB/TrEMBL
	ENSRNOT00055045097	UniProtKB/Swiss-Prot
	ENSRNOT00060014232	UniProtKB/Swiss-Prot
	ENSRNOT00065033035	UniProtKB/Swiss-Prot
Gene3D-CATH	3.40.50.300	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7319260	IMAGE-MGC_LOAD
InterPro	Arf1-5-like	UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
	P-loop_NTPase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Small_GTP-bd_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Small_GTPase_ARF/SAR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:140940	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:105341	IMAGE-MGC_LOAD
NCBI Gene	140940	ENTREZGENE
PANTHER	ADP RIBOSYLATION FACTOR-RELATED	UniProtKB/TrEMBL
	ADP-RIBOSYLATION FACTOR 2	UniProtKB/TrEMBL
	ADP-RIBOSYLATION FACTOR 3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR11711	UniProtKB/Swiss-Prot
Pfam	Arf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Arf3	PhenoGen
PRINTS	SAR1GTPBP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	ARF	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000004807	RatGTEx
	ENSRNOG00000054775	RatGTEx
	ENSRNOG00055026116	RatGTEx
	ENSRNOG00060008518	RatGTEx
	ENSRNOG00065019614	RatGTEx
SMART	ARF	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RAB	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SAR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	P-loop containing nucleoside triphosphate hydrolases	UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
UniProt	A0A8I5ZKF2	ENTREZGENE, UniProtKB/TrEMBL
	A6KCA5	ENTREZGENE, UniProtKB/TrEMBL
	ARF3_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary	P16587	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Arf3	ADP-ribosylation factor 3	LOC100912045	ADP-ribosylation factor 3-like	Data merged from RGD:6489571	737654	PROVISIONAL
2012-07-05	LOC100912045	ADP-ribosylation factor 3-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2004-09-10	Arf3	ADP-ribosylation factor 3			Symbol and Name status set to approved	1299863	APPROVED
2002-08-07	Arf3	ADP-ribosylation factor 3			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar