Mtarc2 (mitochondrial amidoxime reducing component 2) - Rat Genome Database

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Gene: Mtarc2 (mitochondrial amidoxime reducing component 2) Rattus norvegicus
Analyze
Symbol: Mtarc2 (Ensembl: Marc2)
Name: mitochondrial amidoxime reducing component 2
RGD ID: 621257
Description: Predicted to enable molybdenum ion binding activity; molybdopterin cofactor binding activity; and oxidoreductase activity, acting on other nitrogenous compounds as donors. Predicted to be involved in cellular detoxification of nitrogen compound; nitrate metabolic process; and nitric oxide biosynthetic process. Predicted to be located in mitochondrion. Orthologous to human MTARC2 (mitochondrial amidoxime reducing component 2); INTERACTS WITH (+)-schisandrin B; 1,2,4-trimethylbenzene; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC364084; mARC1; Marc2; Mg87; moco sulfurase C-terminal domain-containing protein 2; MOCO sulphurase C-terminal domain containing 2; molybdenum cofactor sulfurase C-terminal domain-containing protein 2; MOSC domain-containing protein 2; MOSC domain-containing protein 2, mitochondrial; Mosc2; similar to MOCO sulphurase C-terminal domain containing 2
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81398,894,347 - 98,928,754 (-)NCBIGRCr8
mRatBN7.21396,362,810 - 96,397,284 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx1398,871,474 - 98,903,474 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.013100,270,651 - 100,302,312 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01397,453,707 - 97,485,716 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.013102,724,266 - 102,755,511 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13102,724,348 - 102,756,174 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013107,401,548 - 107,432,904 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.413100,809,306 - 100,838,648 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.113100,998,348 - 101,027,691NCBI
Celera1395,883,189 - 95,914,342 (-)NCBICelera
Cytogenetic Map13q26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:12865426   PMID:14651853   PMID:15489334   PMID:17416350   PMID:18614015   PMID:20861021   PMID:22203676   PMID:23376485  


Genomics

Comparative Map Data
Mtarc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81398,894,347 - 98,928,754 (-)NCBIGRCr8
mRatBN7.21396,362,810 - 96,397,284 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx1398,871,474 - 98,903,474 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.013100,270,651 - 100,302,312 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01397,453,707 - 97,485,716 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.013102,724,266 - 102,755,511 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13102,724,348 - 102,756,174 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013107,401,548 - 107,432,904 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.413100,809,306 - 100,838,648 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.113100,998,348 - 101,027,691NCBI
Celera1395,883,189 - 95,914,342 (-)NCBICelera
Cytogenetic Map13q26NCBI
MTARC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381220,748,322 - 220,784,815 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1220,748,225 - 220,784,815 (+)EnsemblGRCh38hg38GRCh38
GRCh371220,921,664 - 220,958,157 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361218,988,299 - 219,024,222 (+)NCBINCBI36Build 36hg18NCBI36
Celera1194,141,035 - 194,176,957 (+)NCBICelera
Cytogenetic Map1q41NCBI
HuRef1191,596,292 - 191,632,216 (+)NCBIHuRef
CHM1_11222,194,135 - 222,230,058 (+)NCBICHM1_1
T2T-CHM13v2.01219,988,028 - 220,024,522 (+)NCBIT2T-CHM13v2.0
Mtarc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391184,545,263 - 184,579,266 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1184,545,265 - 184,578,648 (-)EnsemblGRCm39 Ensembl
GRCm381184,813,066 - 184,846,451 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1184,813,068 - 184,846,451 (-)EnsemblGRCm38mm10GRCm38
MGSCv371186,636,947 - 186,669,726 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361186,513,856 - 186,546,635 (-)NCBIMGSCv36mm8
Celera1191,775,533 - 191,808,292 (-)NCBICelera
Cytogenetic Map1H5NCBI
cM Map189.12NCBI
MTARC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2128,615,340 - 28,654,642 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1128,577,172 - 28,616,492 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01196,333,803 - 196,371,147 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11201,368,306 - 201,405,602 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1201,369,424 - 201,405,602 (+)Ensemblpanpan1.1panPan2
MTARC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13815,426,884 - 15,451,701 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3815,426,666 - 15,451,136 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3815,457,261 - 15,493,511 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03815,451,758 - 15,487,926 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3815,451,494 - 15,522,862 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13815,459,348 - 15,495,474 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03815,813,447 - 15,849,915 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03816,106,377 - 16,142,896 (+)NCBIUU_Cfam_GSD_1.0
Mtarc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934456,258,120 - 56,295,420 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366501,506,329 - 1,543,712 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366501,506,471 - 1,543,532 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MTARC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1010,156,728 - 10,189,924 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11010,156,732 - 10,194,371 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21012,363,633 - 12,387,601 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MTARC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1258,745,754 - 8,782,967 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl258,748,605 - 8,782,379 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660559,029,599 - 9,066,624 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mtarc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248354,146,766 - 4,163,430 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248354,146,910 - 4,163,292 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Mtarc2
246 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:199
Count of miRNA genes:147
Interacting mature miRNAs:161
Transcripts:ENSRNOT00000029439
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
1641901Alcrsp6Alcohol response QTL 6response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)135236217197362171Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1356056920101056920Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1361825626106807694Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1365103704106807694Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1365103704106807694Rat
8655959Pur32Proteinuria QTL 328.4urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)137402391897213863Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1374862117101339893Rat
4889606Gluco63Glucose level QTL 632.860.003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1380753256106807694Rat

Markers in Region
D13Got253  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.013107,402,993 - 107,403,129NCBIRnor5.0
RGSC_v3.413100,810,458 - 100,810,593UniSTSRGSC3.4
Cytogenetic Map13q26UniSTS
AU048082  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21396,397,941 - 96,398,167 (+)MAPPERmRatBN7.2
Rnor_6.013102,756,184 - 102,756,409NCBIRnor6.0
Rnor_5.013107,433,628 - 107,433,853UniSTSRnor5.0
RGSC_v3.413100,839,372 - 100,839,597UniSTSRGSC3.4
Celera1395,915,065 - 95,915,290UniSTS
Cytogenetic Map13q26UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 30 57 41 19 41 7 10 53 35 41 11 7
Low 13 1 1 21 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000029439   ⟹   ENSRNOP00000034963
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1396,339,757 - 96,397,796 (-)Ensembl
Rnor_6.0 Ensembl13102,724,348 - 102,756,174 (-)Ensembl
RefSeq Acc Id: NM_134410   ⟹   NP_599237
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81398,897,101 - 98,928,754 (-)NCBI
mRatBN7.21396,365,564 - 96,397,218 (-)NCBI
Rnor_6.013102,724,266 - 102,755,460 (-)NCBI
Rnor_5.013107,401,548 - 107,432,904 (-)NCBI
RGSC_v3.413100,809,306 - 100,838,648 (-)RGD
Celera1395,883,189 - 95,914,342 (-)RGD
Sequence:
RefSeq Acc Id: XM_017598658   ⟹   XP_017454147
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81398,894,347 - 98,928,742 (-)NCBI
mRatBN7.21396,362,810 - 96,397,284 (-)NCBI
Rnor_6.013102,728,231 - 102,755,511 (-)NCBI
Sequence:
RefSeq Acc Id: XR_010056899
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81398,904,183 - 98,910,832 (-)NCBI
Protein Sequences
Protein RefSeqs NP_599237 (Get FASTA)   NCBI Sequence Viewer  
  XP_017454147 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC64190 (Get FASTA)   NCBI Sequence Viewer  
  AAH61734 (Get FASTA)   NCBI Sequence Viewer  
  EDL94903 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00060008520
  ENSRNOP00065022697
GenBank Protein O88994 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_599237   ⟸   NM_134410
- Peptide Label: precursor
- UniProtKB: O88994 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017454147   ⟸   XM_017598658
- Peptide Label: isoform X1
- UniProtKB: A6JGP7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000034963   ⟸   ENSRNOT00000029439
Protein Domains
MOSC

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O88994-F1-model_v2 AlphaFold O88994 1-338 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699087
Promoter ID:EPDNEW_R9611
Type:multiple initiation site
Name:Marc2_1
Description:mitochondrial amidoxime reducing component 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.013102,755,476 - 102,755,536EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621257 AgrOrtholog
BioCyc Gene G2FUF-16999 BioCyc
Ensembl Genes ENSRNOG00000037850 Ensembl
  ENSRNOG00060006953 UniProtKB/Swiss-Prot
  ENSRNOG00065017179 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00060011396 UniProtKB/Swiss-Prot
  ENSRNOT00065028650 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:5598768 IMAGE-MGC_LOAD
InterPro MoCF_Sase_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MOCOS_middle UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
  Pyrv_Knase-like_insert_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:171451 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72310 IMAGE-MGC_LOAD
NCBI Gene 171451 ENTREZGENE
PANTHER MITOCHONDRIAL AMIDOXIME REDUCING COMPONENT 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MOLYBDOPTERIN COFACTOR SULFURASE MOSC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam MOSC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MOSC_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Mtarc2 PhenoGen
PROSITE MOSC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000037850 RatGTEx
  ENSRNOG00060006953 RatGTEx
  ENSRNOG00065017179 RatGTEx
Superfamily-SCOP MOSC N-terminal domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PK beta-barrel domain-like UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
UniProt A6JGP7 ENTREZGENE, UniProtKB/TrEMBL
  MARC2_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-10-10 Mtarc2  mitochondrial amidoxime reducing component 2  Marc2  mitochondrial amidoxime reducing component 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-04-17 Marc2  mitochondrial amidoxime reducing component 2  LOC364084  similar to MOCO sulphurase C-terminal domain containing 2  Data merged from RGD:1598297 737654 PROVISIONAL
2011-12-06 Marc2  mitochondrial amidoxime reducing component 2  Mosc2  MOCO sulphurase C-terminal domain containing 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC364084  similar to MOCO sulphurase C-terminal domain containing 2      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-30 Mosc2  MOCO sulphurase C-terminal domain containing 2  Mg87  Mg87 protein  Symbol and Name updated 1299863 APPROVED
2005-01-20 Mg87  Mg87 protein      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Mg87  Mg87 protein      Symbol and Name status set to provisional 70820 PROVISIONAL