Gripap1 (GRIP1 associated protein 1)

Gene: Gripap1 (GRIP1 associated protein 1) Rattus norvegicus

Analyze

Symbol:

Gripap1

Name:

GRIP1 associated protein 1

RGD ID:

621249

Description:

Enables guanyl-nucleotide exchange factor activity and ionotropic glutamate receptor binding activity. Involved in several processes, including neurotransmitter receptor transport, endosome to postsynaptic membrane; regulation of protein localization to membrane; and regulation of recycling endosome localization within postsynapse. Located in several cellular components, including neuronal cell body; postsynaptic recycling endosome; and presynaptic membrane. Is active in glutamatergic synapse. Is extrinsic component of postsynaptic early endosome membrane. Orthologous to human GRIPAP1 (GRIP1 associated protein 1); INTERACTS WITH 2,4-dinitrotoluene; 3-chloropropane-1,2-diol; ammonium chloride.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

GRASP-1; Grasp1; GRIP-associated protein 1; GRIP1-associated protein 1

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GRIPAP1 (GRIP1 associated protein 1)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB
Mus musculus (house mouse):	Gripap1 (GRIP1 associated protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Gripap1 (GRIP1 associated protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GRIPAP1 (GRIP1 associated protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GRIPAP1 (GRIP1 associated protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Gripap1 (GRIP1 associated protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	GRIPAP1 (GRIP1 associated protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	GRIPAP1 (GRIP1 associated protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Gripap1 (GRIP1 associated protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	KIF4B (kinesin family member 4B)	HGNC	PhylomeDB
Alliance orthologs ³
Homo sapiens (human):	GRIPAP1 (GRIP1 associated protein 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Gripap1 (GRIP1 associated protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	gripap1 (GRIP1 associated protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	F41H10.4	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	17,350,817 - 17,380,626 (-)	NCBI		GRCr8
mRatBN7.2	X	14,678,896 - 14,708,747 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	14,678,898 - 14,708,679 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	19,492,440 - 19,522,378 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	20,560,734 - 20,590,671 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	16,825,905 - 16,855,840 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	15,523,929 - 15,553,702 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	15,523,929 - 15,553,720 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	16,305,164 - 16,334,935 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	26,713,439 - 26,743,461 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	X	26,766,907 - 26,796,928 (-)	NCBI
Celera	X	14,763,609 - 14,793,412 (-)	NCBI		Celera
Cytogenetic Map	X	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

congenital disorder of glycosylation type IIm (ISO)

epilepsy (ISO)

genetic disease (ISO)

immune dysregulation-polyendocrinopathy-enteropathy-X-linked syndrome (ISO)

neurodegeneration with brain iron accumulation 5 (ISO)

Neurodevelopmental Disorders (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

X-linked epilepsy with variable learning disabilities and behavior disorders (ISO)

X-linked severe congenital neutropenia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-dinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-chloropropane-1,2-diol (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

aflatoxin B1 (ISO)

ammonium chloride (EXP)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

caffeine (ISO)

choline (ISO)

chrysene (ISO)

crocidolite asbestos (ISO)

decabromodiphenyl ether (EXP)

dexamethasone (ISO)

enzyme inhibitor (ISO)

epoxiconazole (ISO)

ethanol (EXP,ISO)

folic acid (ISO)

FR900359 (ISO)

fulvestrant (ISO)

indometacin (ISO)

ivermectin (ISO)

L-methionine (ISO)

methamphetamine (ISO)

ozone (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

triptonide (ISO)

tungsten (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of protein localization (IMP)

negative regulation of receptor clustering (IMP)

neurotransmitter receptor transport, endosome to postsynaptic membrane (IBA,IEA,IMP)

regulation of modification of synaptic structure (IBA,IEA,IMP)

regulation of neurotransmitter receptor transport, endosome to postsynaptic membrane (IBA,IDA,IEA,IMP,ISO)

regulation of recycling endosome localization within postsynapse (IBA,IDA,IEA,IMP)

Cellular Component

axon (IEA)

cytosol (IEA,ISO)

dendrite (IDA)

extrinsic component of postsynaptic early endosome membrane (IBA,IDA,IEA)

glutamatergic synapse (IBA,IDA,IEA,IMP,ISO)

intracellular membrane-bounded organelle (ISO)

membrane (IEA)

neuronal cell body (IDA)

nucleoplasm (IEA,ISO)

postsynaptic recycling endosome (IBA,IDA,IEA)

presynaptic membrane (IDA)

recycling endosome membrane (IEA)

Schaffer collateral - CA1 synapse (ISO)

Molecular Function

guanyl-nucleotide exchange factor activity (IMP)

identical protein binding (ISO)

ionotropic glutamate receptor binding (IPI)

protein binding (IPI,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Neuron specific Rab4 effector GRASP-1 coordinates membrane specialization and maturation of recycling endosomes.	Hoogenraad CC, etal., PLoS Biol. 2010 Jan 19;8(1):e1000283. doi: 10.1371/journal.pbio.1000283.
3.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	GRASP-1: a neuronal RasGEF associated with the AMPA receptor/GRIP complex.	Ye B, etal., Neuron 2000 Jun;26(3):603-17.

Additional References at PubMed

PMID:8889548	PMID:22516433	PMID:22871113	PMID:34245609

Genomics

Comparative Map Data

Gripap1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	17,350,817 - 17,380,626 (-)	NCBI		GRCr8
mRatBN7.2	X	14,678,896 - 14,708,747 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	14,678,898 - 14,708,679 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	19,492,440 - 19,522,378 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	20,560,734 - 20,590,671 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	16,825,905 - 16,855,840 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	15,523,929 - 15,553,702 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	15,523,929 - 15,553,720 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	16,305,164 - 16,334,935 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	26,713,439 - 26,743,461 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	X	26,766,907 - 26,796,928 (-)	NCBI
Celera	X	14,763,609 - 14,793,412 (-)	NCBI		Celera
Cytogenetic Map	X	q12	NCBI

GRIPAP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	48,973,723 - 49,002,264 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	48,973,720 - 49,002,265 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	48,830,134 - 48,858,675 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	48,715,078 - 48,743,619 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	X	48,589,582 - 48,614,923	NCBI
Celera	X	52,807,255 - 52,833,383 (+)	NCBI		Celera
Cytogenetic Map	X	p11.23	NCBI
HuRef	X	46,487,542 - 46,516,750 (-)	NCBI		HuRef
CHM1_1	X	48,861,436 - 48,889,990 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	X	48,384,190 - 48,412,744 (-)	NCBI		T2T-CHM13v2.0

Gripap1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	7,656,009 - 7,686,805 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	7,656,004 - 7,686,806 (+)	Ensembl		GRCm39 Ensembl
GRCm38	X	7,789,961 - 7,820,567 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	7,789,765 - 7,820,567 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	7,367,121 - 7,397,689 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	6,946,954 - 6,977,522 (+)	NCBI		MGSCv36	mm8
Celera	X	3,649,702 - 3,680,935 (-)	NCBI		Celera
Cytogenetic Map	X	A1.1	NCBI
cM Map	X	3.51	NCBI

Gripap1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955543	500,340 - 527,267 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955543	500,340 - 527,243 (-)	NCBI	ChiLan1.0	ChiLan1.0

GRIPAP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	50,463,524 - 50,492,167 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	50,466,901 - 50,495,545 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	41,271,762 - 41,300,327 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	49,128,760 - 49,157,059 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	49,128,760 - 49,157,059 (-)	Ensembl	panpan1.1		panPan2

GRIPAP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	42,121,646 - 42,145,330 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	42,121,301 - 42,145,218 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	16,497,529 - 16,520,822 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	42,258,246 - 42,281,569 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	42,257,921 - 42,281,517 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	42,244,505 - 42,267,815 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	42,232,713 - 42,255,999 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	42,326,953 - 42,350,247 (-)	NCBI		UU_Cfam_GSD_1.0

Gripap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	34,652,314 - 34,676,582 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936721	891,824 - 916,984 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936721	892,704 - 916,965 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GRIPAP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	43,043,029 - 43,070,364 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	43,043,613 - 43,070,363 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	47,897,905 - 47,917,864 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GRIPAP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	46,093,225 - 46,120,097 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	46,091,584 - 46,120,097 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666076	11,578,935 - 11,606,742 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gripap1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624893	753,111 - 778,539 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624893	753,111 - 778,563 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Gripap1
96 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	107
Count of miRNA genes:	92
Interacting mature miRNAs:	96
Transcripts:	ENSRNOT00000012646
Prediction methods:	Miranda, Pita, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
731181	Uae27	Urinary albumin excretion QTL 27	2.7	0.0059	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	X	1	43491017	Rat
634325	Bw13	Body weight QTL 13	0		body mass (VT:0001259)	body weight (CMO:0000012)	X	1447972	20991088	Rat
70165	Bp64	Blood pressure QTL 64	5.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	X	1448129	31706553	Rat
631204	Gluco15	Glucose level QTL 15		0.001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	X	1623715	22646544	Rat
1298071	Edpm12	Estrogen-dependent pituitary mass QTL 12	3.2		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	X	2927898	47927898	Rat
10755455	Coatc13	Coat color QTL 13		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	4406000	49406000	Rat
631666	Iddm5	Insulin dependent diabetes mellitus QTL 5			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	X	4494549	49494549	Rat

Markers in Region

AI854681

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	14,678,962 - 14,679,049 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	15,523,996 - 15,524,082	NCBI	Rnor6.0
Rnor_5.0	X	16,305,231 - 16,305,317	UniSTS	Rnor5.0
RGSC_v3.4	X	26,713,506 - 26,713,592	UniSTS	RGSC3.4
Celera	X	14,763,676 - 14,763,762	UniSTS
Cytogenetic Map	X	q13	UniSTS

RH140691

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	14,696,437 - 14,696,652 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	15,541,473 - 15,541,687	NCBI	Rnor6.0
Rnor_5.0	X	16,322,706 - 16,322,920	UniSTS	Rnor5.0
RGSC_v3.4	X	26,730,983 - 26,731,197	UniSTS	RGSC3.4
Celera	X	14,781,183 - 14,781,397	UniSTS
Cytogenetic Map	X	q13	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	35	47	31	19	31		3	74	30	39	11
Low		8	10	10		10	8	8		5	2		8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_053807	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099399	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099400	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099401	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099403	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099405	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279737	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279738	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279739	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279740	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279741	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279742	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279743	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279744	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279745	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279746	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279747	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279748	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279749	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279750	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279751	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279752	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279753	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279754	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC130624	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF274057	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF274058	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BQ780554	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474078	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225658	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233233	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234976	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000012646 ⟹ ENSRNOP00000012646

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	14,678,898 - 14,708,666 (-)	Ensembl
Rnor_6.0 Ensembl	X	15,523,929 - 15,553,720 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000102832 ⟹ ENSRNOP00000097700

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	14,678,899 - 14,708,679 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000104859 ⟹ ENSRNOP00000081274

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	14,678,898 - 14,702,524 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000110470 ⟹ ENSRNOP00000081157

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	14,678,898 - 14,706,808 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000111277 ⟹ ENSRNOP00000085406

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	14,678,898 - 14,708,665 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000118453 ⟹ ENSRNOP00000084554

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	14,678,898 - 14,702,524 (-)	Ensembl

RefSeq Acc Id:

NM_053807 ⟹ NP_446259

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	17,350,817 - 17,380,588 (-)	NCBI
mRatBN7.2	X	14,678,896 - 14,708,666 (-)	NCBI
Rnor_6.0	X	15,523,929 - 15,553,702 (-)	NCBI
Rnor_5.0	X	16,305,164 - 16,334,935 (-)	NCBI
RGSC_v3.4	X	26,713,439 - 26,743,461 (-)	RGD
Celera	X	14,763,609 - 14,793,412 (-)	RGD

Sequence:

show sequence

ACGGCTGCGAGAAGACAACAGAAGGGGGGGGTGGGGGGAGGAACATGGCGCAAGCTCTGTCTGA
AGAGGAGTTTCAACGGATGCAGACACAGCTCCTGGAACTCCGGACAAATAACTACCAGCTTTCA
GATGAACTCCGGAAGAATGGTGTTGAACTTTCCAGTCTTCGACAGAAGGTCGCCTACCTGGATA
AGGAATTCAGTAAAGCTCAAAAGGCACTAAGCAAGAGCAAGAAAGCTCAGGAAGTGGAGGTACT
GCTGAGTGAAAAAGAGATGCTGCAGGCAAAGCTGCACAGCCAGGAGGAGGACTTCCGTTTGCAG
AACAGTACACTTATGGCCGAGTTCAGCAAGCTCTGCAGCCAGCTGGAGCAGCTGGAGCTGGAGA
ACCGACAACTCAAGGAAGGGGTTCCTGGAGCAGCTGGACCACATGTGGACGGGGAGCTGCTGAG
GCTGCAGGCAGAGAACACAGCCTTGCAGAAGAACATGGCAGCACTGCAGGAGCGCTATGGGAAA
GAGGCTGTGAGGCCCTCCGCTGTCAGTGAGGGCCAAGGAGATCCACCAGGAGATGTACTCCCCA
TTTCCTTGTCTCCCATGCCATTGGCAGAAGTGGAGCTGAAGTGGGAAATGGAGAGAGAAGAAAA
AAAGTTGCTTTGGGAACAGCTACAAGGCTTAGAGAGCTCAAAGCAAGCTGAAACCTCCAGACTC
CAGGAGGAACTTGCTAAGCTCTCTGAGAAATTGAAAAAGAAACAGGAAAGTTTTTGCCGTCTAC
AGACAGAGAAGGAAACACTGTTTAATGATAGCAGGAACAAAATTGAAGAATTGCAACAACGGAA
GGAAGCTGATCTGAAAGCCCAGTTGGCTCGCACCCAAAAACTACAGCAGGAACTTGAGGCTGCC
AATCAGAGCTTGGCAGAGCTAAGAGATCAGCGGCAGGGGGAGCGTCTGGAGCATGCAGCAGCAC
TGCGGGCCCTACAAGATCAGGTGTCCAGCCAGAGTGCAGATGCGCAGGAACAAGTGGAAGGGCT
ATTGGCTGAGAACAATGCCTTGAGGACTAGCTTGGCCGCTCTGGAGCAGATCCAGACAGCAAAG
ACACAGGAACTGAATATGCTTCGGGAACAGAACACTGAACTGGCAGCCGAGTTAAAGCATCGAC
AGGCTGACTATGAAGAGCTTATGGGACAGAAAGACGACCTCAACTCCCAGCTCCAGGAGTCGTT
AAGGGCCAATAGCCGGCTGCTGGAACAACTACAAGAAATGGGGCAGGAGAAGGAGCAGCTGATC
CAGGATCTCCAGGAAGCTCGGAAGAGTGCTGAGAAAAGGAAGGTCATGCTGGATGAGCTAGCCA
TGGAGACACTGCAGGAGAAGTCCCAGCACAAAGAAGAATTGGGGGCTGTCCGGTTACGGCATGA
GAAGGAGATGCTGGGGGTGCGAGCCCGTTATGAGCGGGAGCTTCGAGAACTGCATGAGGACAAG
AAACGGCAGGAGGAGGAGCTCCGGGGGCAGATTCGTGAGGAGAAGGCTCGAACAAGGGAATTAG
AAAATCTTCAGCACACAGTGGAAGAACTTCAGGCTCAGGTACACTCCATGGATGGAGCCAAGGG
CTGGTTTGAACGGCGCCTGAAGGAAGCTGAGGAATCCTTACTGCAGCAAGAGCAGGAACAGGAG
GAAACCCTCAAGCAGTGCCGGGAGCAGCACGCTGCCGAGCTGAAGGGCAAGGAGGAAGAGCTTC
AGAATGTTCGAGATCAGCTCCAGCAGGCCCAGGAAGAGCGAGATGGCCATGTGAAGACCATCAG
CAACCTGAAGCAGGAGGTAAAGGACACAGTGGACGGGCAGCGGATCCTGGAAAAGAAAGGCAGT
GCTGTGCTCAAAGACCTTAAGAGGCAGCTGCACCTAGAGCGGAAGCGGGCTGATAAGCTGCAGG
AACGGCTGCAGGAGATCCTGACTAACAGCAAGAGCCGCACAGGCCTTGAGGAGCTGGTTCTCTC
TGAGATGAACTCACCAAGCAGGACCCAGACAGGGGACAGCAGTAGCGTCTCCTCCTTCAGCTAC
CGGGAGATCTTGAAGGAAAAGGAGAGTTCAGCCATCCCAGCCAGGTCTCTATCCAGCAGTCCTC
AGGCGCAGCCCCCTCGGCCAGCAGAGCTGTCAGATGAGGAAGTGGCTGAGCTGTTTCAGAGGCT
GGCCGAGACACAGCAGGAGAAATGGATGCTGGAGGAGAAGGTGAAACACCTGGAGGTGAGCAGC
GCCTCGATGGCGGAAGACCTCTGTCGGAAAAGTGCCATCATTGAGACCTACGTCATGGACAGCC
GGATTGATGTGTCTGTGGCAGCAGGCCACACAGACCGAAGTGGGCTGGGCAGTGTCCTGAGAGA
CCTAGTGAAGCCCGGCGATGAGAACCTTCGGGAAATGAACAAGAAGCTGCAGAACATGTTGGAG
GAGCAACTCACCAAGAACATGCACTTGCACAAGGACATGGAAGTTCTATCCCAAGAAATTGTGC
GGCTCAGCAAGGAATGCGTGGGGTCCCCTGACCCAGACCTAGAACCTGGAGAAGCCAACTAAAG
ATCTACAGGCCTCGACTATCCCAGTCCTTTCCAGAATGCCACTCACTCCCTTGGGCTGCGGTGG
GAAAATATGGAGGCTGGCACCAAATCTCATAGTTTGGGAGATGGACATTAAAGGGGCTAGAGGC
CTGTATGTGGCTGGTGTTGATGACCCTGATGTATGGCAGAGGCCCTTGGGGAAAAGAGATCCTA
AGGGAAGGGCAGGGAGTTTTCCTTTTCGGCTCTGGTTCCCAGGGTCATCTGCCTTCAACTGTGC
ATGAACTCTCCCTCCCAGAGACCAACTGTGTTTCATTTTATTTTATTTTTTAATTTATGTCTGG
AAGCCTGGCTAAACTCTGCATTTGGGACTGGGGGTGTTGGGTGGGGGTGCAGTCCATGTTCAAT
GTTCCAGCAACGTGTGTATGTGTGTGAGTGTGTGTGTAAAGGCTATGTGGCCAAAATACTATCT
GGCCAGATGGGCCCACCCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039099399 ⟹ XP_038955327

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	17,350,817 - 17,380,619 (-)	NCBI
mRatBN7.2	X	14,678,896 - 14,708,747 (-)	NCBI

RefSeq Acc Id:

XM_039099400 ⟹ XP_038955328

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	17,350,817 - 17,380,619 (-)	NCBI
mRatBN7.2	X	14,678,896 - 14,708,747 (-)	NCBI

RefSeq Acc Id:

XM_039099401 ⟹ XP_038955329

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	17,350,817 - 17,380,620 (-)	NCBI
mRatBN7.2	X	14,678,896 - 14,708,747 (-)	NCBI

RefSeq Acc Id:

XM_039099403 ⟹ XP_038955331

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	17,350,817 - 17,380,619 (-)	NCBI
mRatBN7.2	X	14,678,896 - 14,708,747 (-)	NCBI

RefSeq Acc Id:

XM_039099404 ⟹ XP_038955332

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	17,350,817 - 17,380,619 (-)	NCBI
mRatBN7.2	X	14,678,896 - 14,708,747 (-)	NCBI

RefSeq Acc Id:

XM_039099405 ⟹ XP_038955333

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	17,350,817 - 17,380,620 (-)	NCBI
mRatBN7.2	X	14,678,896 - 14,708,747 (-)	NCBI

RefSeq Acc Id:

XM_063279737 ⟹ XP_063135807

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	17,350,817 - 17,380,624 (-)	NCBI

RefSeq Acc Id:

XM_063279738 ⟹ XP_063135808

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	17,350,817 - 17,380,625 (-)	NCBI

RefSeq Acc Id:

XM_063279739 ⟹ XP_063135809

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	17,350,817 - 17,380,625 (-)	NCBI

RefSeq Acc Id:

XM_063279740 ⟹ XP_063135810

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	17,350,817 - 17,380,625 (-)	NCBI

RefSeq Acc Id:

XM_063279741 ⟹ XP_063135811

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	17,350,817 - 17,380,625 (-)	NCBI

RefSeq Acc Id:

XM_063279742 ⟹ XP_063135812

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	17,350,817 - 17,380,625 (-)	NCBI

RefSeq Acc Id:

XM_063279743 ⟹ XP_063135813

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	17,350,817 - 17,380,624 (-)	NCBI

RefSeq Acc Id:

XM_063279744 ⟹ XP_063135814

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	17,350,817 - 17,380,626 (-)	NCBI

RefSeq Acc Id:

XM_063279745 ⟹ XP_063135815

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	17,350,817 - 17,380,620 (-)	NCBI

RefSeq Acc Id:

XM_063279746 ⟹ XP_063135816

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	17,350,817 - 17,380,625 (-)	NCBI

RefSeq Acc Id:

XM_063279747 ⟹ XP_063135817

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	17,350,817 - 17,380,625 (-)	NCBI

RefSeq Acc Id:

XM_063279748 ⟹ XP_063135818

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	17,350,817 - 17,380,620 (-)	NCBI

RefSeq Acc Id:

XM_063279749 ⟹ XP_063135819

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	17,350,817 - 17,380,626 (-)	NCBI

RefSeq Acc Id:

XM_063279750 ⟹ XP_063135820

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	17,350,817 - 17,380,625 (-)	NCBI

RefSeq Acc Id:

XM_063279751 ⟹ XP_063135821

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	17,350,817 - 17,380,626 (-)	NCBI

RefSeq Acc Id:

XM_063279752 ⟹ XP_063135822

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	17,350,817 - 17,380,620 (-)	NCBI

RefSeq Acc Id:

XM_063279753 ⟹ XP_063135823

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	17,350,817 - 17,380,620 (-)	NCBI

RefSeq Acc Id:

XM_063279754 ⟹ XP_063135824

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	17,350,817 - 17,380,620 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_446259	(Get FASTA)	NCBI Sequence Viewer
	XP_038955327	(Get FASTA)	NCBI Sequence Viewer
	XP_038955328	(Get FASTA)	NCBI Sequence Viewer
	XP_038955329	(Get FASTA)	NCBI Sequence Viewer
	XP_038955331	(Get FASTA)	NCBI Sequence Viewer
	XP_038955332	(Get FASTA)	NCBI Sequence Viewer
	XP_038955333	(Get FASTA)	NCBI Sequence Viewer
	XP_063135807	(Get FASTA)	NCBI Sequence Viewer
	XP_063135808	(Get FASTA)	NCBI Sequence Viewer
	XP_063135809	(Get FASTA)	NCBI Sequence Viewer
	XP_063135810	(Get FASTA)	NCBI Sequence Viewer
	XP_063135811	(Get FASTA)	NCBI Sequence Viewer
	XP_063135812	(Get FASTA)	NCBI Sequence Viewer
	XP_063135813	(Get FASTA)	NCBI Sequence Viewer
	XP_063135814	(Get FASTA)	NCBI Sequence Viewer
	XP_063135815	(Get FASTA)	NCBI Sequence Viewer
	XP_063135816	(Get FASTA)	NCBI Sequence Viewer
	XP_063135817	(Get FASTA)	NCBI Sequence Viewer
	XP_063135818	(Get FASTA)	NCBI Sequence Viewer
	XP_063135819	(Get FASTA)	NCBI Sequence Viewer
	XP_063135820	(Get FASTA)	NCBI Sequence Viewer
	XP_063135821	(Get FASTA)	NCBI Sequence Viewer
	XP_063135822	(Get FASTA)	NCBI Sequence Viewer
	XP_063135823	(Get FASTA)	NCBI Sequence Viewer
	XP_063135824	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAF82298	(Get FASTA)	NCBI Sequence Viewer
	AAF82299	(Get FASTA)	NCBI Sequence Viewer
	EDL83826	(Get FASTA)	NCBI Sequence Viewer
	EDL83827	(Get FASTA)	NCBI Sequence Viewer
	EDL83828	(Get FASTA)	NCBI Sequence Viewer
	EDL83829	(Get FASTA)	NCBI Sequence Viewer
	EDL83830	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000012646
	ENSRNOP00000012646.7
	ENSRNOP00000081157.1
	ENSRNOP00000081274.1
	ENSRNOP00000084554.1
	ENSRNOP00000085406
	ENSRNOP00000085406.1
	ENSRNOP00000097700
	ENSRNOP00000097700.1
	ENSRNOP00055040398
	ENSRNOP00060034870
	ENSRNOP00065013878
GenBank Protein	Q9JHZ4	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_446259 ⟸ NM_053807

- UniProtKB:

Q9JHZ3 (UniProtKB/Swiss-Prot), Q9JHZ4 (UniProtKB/Swiss-Prot), A6KP79 (UniProtKB/TrEMBL), A0A8I5ZRM3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAQALSEEEFQRMQTQLLELRTNNYQLSDELRKNGVELSSLRQKVAYLDKEFSKAQKALSKSKK
AQEVEVLLSEKEMLQAKLHSQEEDFRLQNSTLMAEFSKLCSQLEQLELENRQLKEGVPGAAGPH
VDGELLRLQAENTALQKNMAALQERYGKEAVRPSAVSEGQGDPPGDVLPISLSPMPLAEVELKW
EMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKI
EELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADA
QEQVEGLLAENNALRTSLAALEQIQTAKTQELNMLREQNTELAAELKHRQADYEELMGQKDDLN
SQLQESLRANSRLLEQLQEMGQEKEQLIQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELG
AVRLRHEKEMLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVH
SMDGAKGWFERRLKEAEESLLQQEQEQEETLKQCREQHAAELKGKEEELQNVRDQLQQAQEERD
GHVKTISNLKQEVKDTVDGQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEILTNSKSRTG
LEELVLSEMNSPSRTQTGDSSSVSSFSYREILKEKESSAIPARSLSSSPQAQPPRPAELSDEEV
AELFQRLAETQQEKWMLEEKVKHLEVSSASMAEDLCRKSAIIETYVMDSRIDVSVAAGHTDRSG
LGSVLRDLVKPGDENLREMNKKLQNMLEEQLTKNMHLHKDMEVLSQEIVRLSKECVGSPDPDLE
PGEAN

hide sequence

RefSeq Acc Id:

ENSRNOP00000012646 ⟸ ENSRNOT00000012646

RefSeq Acc Id:	XP_038955332 ⟸ XM_039099404
- Peptide Label:	isoform X17
- UniProtKB:	A6KP78 (UniProtKB/TrEMBL), A0A8I5ZRM3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955327 ⟸ XM_039099399
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I5ZRM3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955331 ⟸ XM_039099403
- Peptide Label:	isoform X15
- UniProtKB:	A0A8I5ZRM3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955333 ⟸ XM_039099405
- Peptide Label:	isoform X18
- UniProtKB:	A0A8I5ZRM3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955328 ⟸ XM_039099400
- Peptide Label:	isoform X8
- UniProtKB:	A0A8I5ZRM3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955329 ⟸ XM_039099401
- Peptide Label:	isoform X13
- UniProtKB:	A0A8I5ZRM3 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000081157 ⟸ ENSRNOT00000110470

RefSeq Acc Id:

ENSRNOP00000081274 ⟸ ENSRNOT00000104859

RefSeq Acc Id:

ENSRNOP00000085406 ⟸ ENSRNOT00000111277

RefSeq Acc Id:

ENSRNOP00000084554 ⟸ ENSRNOT00000118453

RefSeq Acc Id:

ENSRNOP00000097700 ⟸ ENSRNOT00000102832

RefSeq Acc Id:	XP_063135821 ⟸ XM_063279751
- Peptide Label:	isoform X21

RefSeq Acc Id:	XP_063135819 ⟸ XM_063279749
- Peptide Label:	isoform X19

RefSeq Acc Id:	XP_063135814 ⟸ XM_063279744
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_063135820 ⟸ XM_063279750
- Peptide Label:	isoform X20

RefSeq Acc Id:	XP_063135817 ⟸ XM_063279747
- Peptide Label:	isoform X14

RefSeq Acc Id:	XP_063135810 ⟸ XM_063279740
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063135808 ⟸ XM_063279738
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063135816 ⟸ XM_063279746
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_063135812 ⟸ XM_063279742
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_063135809 ⟸ XM_063279739
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063135811 ⟸ XM_063279741
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063135813 ⟸ XM_063279743
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_063135807 ⟸ XM_063279737
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063135824 ⟸ XM_063279754
- Peptide Label:	isoform X24

RefSeq Acc Id:	XP_063135823 ⟸ XM_063279753
- Peptide Label:	isoform X23

RefSeq Acc Id:	XP_063135815 ⟸ XM_063279745
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_063135818 ⟸ XM_063279748
- Peptide Label:	isoform X16

RefSeq Acc Id:	XP_063135822 ⟸ XM_063279752
- Peptide Label:	isoform X22

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9JHZ4-F1-model_v2	AlphaFold	Q9JHZ4	1-837	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701742

Promoter ID:

EPDNEW_R12265

Type:

initiation region

Name:

Gripap1_1

Description:

GRIP1 associated protein 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	X	15,553,715 - 15,553,775	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621249	AgrOrtholog
BioCyc Gene	G2FUF-2922	BioCyc
Ensembl Genes	ENSRNOG00000009071	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00055028286	UniProtKB/Swiss-Prot
	ENSRNOG00060024104	UniProtKB/Swiss-Prot
	ENSRNOG00065011223	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000012646	ENTREZGENE
	ENSRNOT00000012646.8	UniProtKB/Swiss-Prot
	ENSRNOT00000102832.1	UniProtKB/TrEMBL
	ENSRNOT00000104859.1	UniProtKB/TrEMBL
	ENSRNOT00000110470.1	UniProtKB/TrEMBL
	ENSRNOT00000111277.1	UniProtKB/Swiss-Prot
	ENSRNOT00000118453.1	UniProtKB/TrEMBL
	ENSRNOT00055049092	UniProtKB/Swiss-Prot
	ENSRNOT00060042048	UniProtKB/Swiss-Prot
	ENSRNOT00065018194	UniProtKB/Swiss-Prot
InterPro	GRIPAP1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:116493	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene	116493	ENTREZGENE
PANTHER	GRIP1-ASSOCIATED PROTEIN 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR18978	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Gripap1	PhenoGen
RatGTEx	ENSRNOG00000009071	RatGTEx
	ENSRNOG00055028286	RatGTEx
	ENSRNOG00060024104	RatGTEx
	ENSRNOG00065011223	RatGTEx
UniProt	A0A8I5ZRM3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZSM8_RAT	UniProtKB/TrEMBL
	A0A8I6A293_RAT	UniProtKB/TrEMBL
	A0A8I6ARM9_RAT	UniProtKB/TrEMBL
	A6KP78	ENTREZGENE, UniProtKB/TrEMBL
	A6KP79	ENTREZGENE, UniProtKB/TrEMBL
	A6KP80_RAT	UniProtKB/TrEMBL
	A6KP81_RAT	UniProtKB/TrEMBL
	A6KP82_RAT	UniProtKB/TrEMBL
	GRAP1_RAT	UniProtKB/Swiss-Prot
	Q9JHZ3	ENTREZGENE
	Q9JHZ4	ENTREZGENE
UniProt Secondary	Q9JHZ3	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-01-20	Gripap1	GRIP1 associated protein 1	Grasp1	GRIP-associated protein 1	Symbol and Name updated	1299863	APPROVED
2002-08-07	Grasp1	GRIP-associated protein 1			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_physical_interaction	interacts with GRIP and AMPA receptors	632892

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar