Chst10 (carbohydrate sulfotransferase 10) - Rat Genome Database

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Gene: Chst10 (carbohydrate sulfotransferase 10) Rattus norvegicus
Analyze
Symbol: Chst10
Name: carbohydrate sulfotransferase 10
RGD ID: 621216
Description: Enables HNK-1 sulfotransferase activity. Predicted to be involved in androgen metabolic process; estrogen metabolic process; and proteoglycan biosynthetic process. Predicted to act upstream of or within learning and long-term memory. Located in Golgi membrane. Orthologous to human CHST10 (carbohydrate sulfotransferase 10); PARTICIPATES IN O-linked glycan biosynthetic pathway; INTERACTS WITH ammonium chloride; amphetamine; atrazine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: HNK-1 sulfotransferase; Hnk-1st; HNK1ST; raHNK-1ST; sul-T
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8948,588,575 - 48,618,487 (-)NCBIGRCr8
mRatBN7.2941,092,805 - 41,122,737 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl941,092,808 - 41,122,503 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx949,587,281 - 49,617,111 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0954,710,040 - 54,739,861 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0952,993,583 - 53,023,446 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0945,528,928 - 45,559,365 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl945,528,928 - 45,559,140 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0945,222,140 - 45,252,382 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4937,851,796 - 37,881,657 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1937,853,210 - 37,883,071 (-)NCBI
Celera938,843,700 - 38,873,565 (-)NCBICelera
Cytogenetic Map9q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
Golgi membrane  (IDA,IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Expression cloning of a cDNA encoding a sulfotransferase involved in the biosynthesis of the HNK-1 carbohydrate epitope. Bakker H, etal., J Biol Chem 1997 Nov 21;272(47):29942-6.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. HNK-1 sulfotransferase-dependent sulfation regulating laminin-binding glycans occurs in the post-phosphoryl moiety on α-dystroglycan. Nakagawa N, etal., Glycobiology. 2013 Sep;23(9):1066-74. doi: 10.1093/glycob/cwt043. Epub 2013 May 30.
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11044619   PMID:12213450   PMID:16543228  


Genomics

Comparative Map Data
Chst10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8948,588,575 - 48,618,487 (-)NCBIGRCr8
mRatBN7.2941,092,805 - 41,122,737 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl941,092,808 - 41,122,503 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx949,587,281 - 49,617,111 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0954,710,040 - 54,739,861 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0952,993,583 - 53,023,446 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0945,528,928 - 45,559,365 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl945,528,928 - 45,559,140 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0945,222,140 - 45,252,382 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4937,851,796 - 37,881,657 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1937,853,210 - 37,883,071 (-)NCBI
Celera938,843,700 - 38,873,565 (-)NCBICelera
Cytogenetic Map9q22NCBI
CHST10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382100,391,860 - 100,417,668 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2100,391,860 - 100,417,668 (-)EnsemblGRCh38hg38GRCh38
GRCh372101,008,322 - 101,034,130 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362100,374,754 - 100,400,523 (-)NCBINCBI36Build 36hg18NCBI36
Build 342100,466,839 - 100,492,609NCBI
Celera295,212,945 - 95,238,710 (-)NCBICelera
Cytogenetic Map2q11.2NCBI
HuRef294,773,099 - 94,798,904 (-)NCBIHuRef
CHM1_12101,012,667 - 101,038,475 (-)NCBICHM1_1
T2T-CHM13v2.02100,850,699 - 100,876,504 (-)NCBIT2T-CHM13v2.0
Chst10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39138,902,948 - 38,937,256 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl138,902,948 - 38,937,242 (-)EnsemblGRCm39 Ensembl
GRCm38138,863,867 - 38,898,177 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl138,863,867 - 38,898,161 (-)EnsemblGRCm38mm10GRCm38
MGSCv37138,920,717 - 38,955,005 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36138,808,418 - 38,842,706 (-)NCBIMGSCv36mm8
Celera138,649,369 - 38,684,228 (-)NCBICelera
Cytogenetic Map1BNCBI
cM Map117.24NCBI
Chst10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554706,448,167 - 6,468,386 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554706,448,167 - 6,468,386 (-)NCBIChiLan1.0ChiLan1.0
CHST10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21227,808,690 - 27,834,580 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A27,811,461 - 27,837,341 (+)NCBINHGRI_mPanPan1
PanPan1.12A101,372,705 - 101,398,242 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A101,372,705 - 101,397,850 (-)Ensemblpanpan1.1panPan2
CHST10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11042,311,166 - 42,340,856 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1042,312,903 - 42,339,732 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1042,234,013 - 42,264,162 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01043,177,124 - 43,209,302 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1043,177,402 - 43,209,296 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11042,899,764 - 42,930,103 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01043,172,135 - 43,203,986 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01043,363,262 - 43,393,384 (+)NCBIUU_Cfam_GSD_1.0
Chst10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629286,020,788 - 86,046,099 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936661523,407 - 551,526 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936661523,440 - 548,718 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHST10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl353,862,618 - 53,898,103 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1353,804,502 - 53,899,244 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2356,449,429 - 56,484,860 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CHST10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1144,114,495 - 4,139,741 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl144,114,464 - 4,131,524 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041171,732,801 - 171,758,688 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chst10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247495,269,849 - 5,293,680 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247495,269,849 - 5,293,747 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Chst10
139 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:248
Count of miRNA genes:171
Interacting mature miRNAs:200
Transcripts:ENSRNOT00000017714
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9510982642921101Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9510982650109826Rat
11353947Bp392Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9728325252283252Rat
9589133Insul26Insulin level QTL 2617.960.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)9895256053952560Rat
7411609Foco16Food consumption QTL 1625.60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9895256053952560Rat
1600365Mcs20Mammary carcinoma susceptibility QTL 203mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)91353377042791750Rat
631680Cm11Cardiac mass QTL 113.10.00089heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)92043051965430519Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92207116986369743Rat
631643Bp120Blood pressure QTL 12030.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)92207120067071200Rat
1598823Memor16Memory QTL 161.9exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)92213332249968732Rat
7207805Bmd88Bone mineral density QTL 884femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)92375402458157242Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)92375402461381613Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92375414483851531Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)92526804479271759Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)92746863972468639Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)93253550577535505Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)93253550577535505Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)93696235977814038Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
6903941Pur31Proteinuria QTL 310.036urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)94019418885194188Rat
11353949Bp393Blood pressure QTL 393arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94019418885194188Rat

Markers in Region
RH132442  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2941,092,968 - 41,093,152 (+)MAPPERmRatBN7.2
Rnor_6.0945,529,092 - 45,529,275NCBIRnor6.0
Rnor_5.0945,222,304 - 45,222,487UniSTSRnor5.0
RGSC_v3.4937,851,960 - 37,852,143UniSTSRGSC3.4
Celera938,843,864 - 38,844,047UniSTS
RH 3.4 Map9377.5UniSTS
Cytogenetic Map9q21UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 74 2 1
Low 3 40 16 6 15 6 4 7 27 38 11 4
Below cutoff 3 37 31 4 31 4 4 6 2 4

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000017714   ⟹   ENSRNOP00000017714
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl941,093,000 - 41,122,503 (-)Ensembl
Rnor_6.0 Ensembl945,528,931 - 45,559,140 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000087866   ⟹   ENSRNOP00000073358
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl941,092,808 - 41,122,464 (-)Ensembl
Rnor_6.0 Ensembl945,528,928 - 45,558,993 (-)Ensembl
RefSeq Acc Id: NM_080397   ⟹   NP_536322
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8948,588,575 - 48,618,442 (-)NCBI
mRatBN7.2941,092,805 - 41,122,677 (-)NCBI
Rnor_6.0945,528,928 - 45,559,140 (-)NCBI
Rnor_5.0945,222,140 - 45,252,382 (-)NCBI
RGSC_v3.4937,851,796 - 37,881,657 (-)RGD
Celera938,843,700 - 38,873,565 (-)RGD
Sequence:
RefSeq Acc Id: XM_006244730   ⟹   XP_006244792
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8948,588,575 - 48,618,487 (-)NCBI
mRatBN7.2941,092,805 - 41,122,736 (-)NCBI
Rnor_6.0945,528,928 - 45,559,364 (-)NCBI
Rnor_5.0945,222,140 - 45,252,382 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039082969   ⟹   XP_038938897
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8948,588,575 - 48,597,954 (-)NCBI
mRatBN7.2941,092,805 - 41,102,184 (-)NCBI
RefSeq Acc Id: XM_063266596   ⟹   XP_063122666
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8948,588,575 - 48,614,902 (-)NCBI
RefSeq Acc Id: XM_063266597   ⟹   XP_063122667
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8948,588,575 - 48,614,902 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_536322   ⟸   NM_080397
- UniProtKB: O54702 (UniProtKB/Swiss-Prot),   A6INK4 (UniProtKB/TrEMBL),   A0A0G2K5A9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006244792   ⟸   XM_006244730
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K5A9 (UniProtKB/TrEMBL),   A0A8L2Q8P2 (UniProtKB/TrEMBL),   A6INK3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000073358   ⟸   ENSRNOT00000087866
RefSeq Acc Id: ENSRNOP00000017714   ⟸   ENSRNOT00000017714
RefSeq Acc Id: XP_038938897   ⟸   XM_039082969
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063122667   ⟸   XM_063266597
- Peptide Label: isoform X2
- UniProtKB: O54702 (UniProtKB/Swiss-Prot),   A6INK4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122666   ⟸   XM_063266596
- Peptide Label: isoform X2
- UniProtKB: O54702 (UniProtKB/Swiss-Prot),   A6INK4 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O54702-F1-model_v2 AlphaFold O54702 1-356 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696627
Promoter ID:EPDNEW_R7145
Type:single initiation site
Name:Chst10_1
Description:carbohydrate sulfotransferase 10
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R7146  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0945,558,966 - 45,559,026EPDNEW
RGD ID:13696622
Promoter ID:EPDNEW_R7146
Type:multiple initiation site
Name:Chst10_2
Description:carbohydrate sulfotransferase 10
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R7145  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0945,559,186 - 45,559,246EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621216 AgrOrtholog
BioCyc Gene G2FUF-27765 BioCyc
Ensembl Genes ENSRNOG00000012815 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00055018911 UniProtKB/Swiss-Prot
  ENSRNOG00060019560 UniProtKB/Swiss-Prot
  ENSRNOG00065028564 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000017714.5 UniProtKB/TrEMBL
  ENSRNOT00000087866 ENTREZGENE
  ENSRNOT00000087866.2 UniProtKB/TrEMBL
  ENSRNOT00055032249 UniProtKB/Swiss-Prot
  ENSRNOT00060033802 UniProtKB/Swiss-Prot
  ENSRNOT00065049250 UniProtKB/Swiss-Prot
InterPro Carb_sulfotrans_8-10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sulfotransferase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:140568 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 140568 ENTREZGENE
PANTHER CARBOHYDRATE SULFOTRANSFERASE 10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12137 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Sulfotransfer_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Chst10 PhenoGen
RatGTEx ENSRNOG00000012815 RatGTEx
  ENSRNOG00055018911 RatGTEx
  ENSRNOG00060019560 RatGTEx
  ENSRNOG00065028564 RatGTEx
UniProt A0A0G2K5A9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2Q8P2 ENTREZGENE, UniProtKB/TrEMBL
  A6INK3 ENTREZGENE, UniProtKB/TrEMBL
  A6INK4 ENTREZGENE, UniProtKB/TrEMBL
  CHSTA_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-02-10 Chst10  carbohydrate sulfotransferase 10  Hnk-1st  HNK-1 sulfotransferase  Symbol and Name updated to reflect Human and Mouse nomenclature 625702 APPROVED
2002-08-07 Hnk-1st  HNK-1 sulfotransferase      Symbol and Name status set to provisional 70820 PROVISIONAL