Dync1li2 (dynein, cytoplasmic 1 light intermediate chain 2) - Rat Genome Database

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Gene: Dync1li2 (dynein, cytoplasmic 1 light intermediate chain 2) Rattus norvegicus
Analyze
Symbol: Dync1li2
Name: dynein, cytoplasmic 1 light intermediate chain 2
RGD ID: 621130
Description: Enables identical protein binding activity. Involved in cellular response to nerve growth factor stimulus. Located in centrosome and kinetochore. Colocalizes with late endosome. Orthologous to human DYNC1LI2 (dynein cytoplasmic 1 light intermediate chain 2); PARTICIPATES IN mitochondria transport pathway; phagocytosis pathway; vasopressin signaling pathway via receptor type 2; INTERACTS WITH 2,4-dinitrotoluene; 2,6-dinitrotoluene; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cytoplasmic dynein 1 light intermediate chain 2; Dncli2; dynein light intermediate chain 2, cytosolic; dynein, cytoplasmic, light intermediate polypeptide 2; LIC-2 dynein light intermediate chain 53/55; Lic2; LIC53/55; MGC108664
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr819538,207 - 561,110 (+)NCBIGRCr8
mRatBN7.219531,783 - 554,670 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl19531,812 - 554,670 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx19527,820 - 550,511 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0191,294,617 - 1,317,308 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.019569,831 - 592,522 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.019740,007 - 762,897 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl19740,028 - 762,897 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.019738,990 - 762,115 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.419469,163 - 510,647 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.119469,162 - 510,647 (+)NCBI
Celera19527,460 - 550,605 (+)NCBICelera
Cytogenetic Map19p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4,6-tribromophenol  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,3',5-triiodo-L-thyronine  (ISO)
3-chloropropane-1,2-diol  (EXP)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (EXP)
caffeine  (ISO)
CGP 52608  (ISO)
clofibric acid  (EXP)
clozapine  (ISO)
cocaine  (EXP)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
disodium selenite  (ISO)
endosulfan  (EXP)
enzyme inhibitor  (ISO)
fipronil  (EXP)
folic acid  (ISO)
FR900359  (ISO)
hexadecanoic acid  (ISO)
indometacin  (EXP)
ivermectin  (ISO)
menadione  (ISO)
methapyrilene  (EXP)
methotrexate  (ISO)
N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine  (ISO)
N-nitrosodiethylamine  (EXP)
nicotine  (ISO)
ozone  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (EXP)
pirinixic acid  (ISO)
propiconazole  (EXP)
quercetin  (ISO)
raloxifene  (ISO)
SB 431542  (ISO)
sulfadimethoxine  (EXP)
tacrine  (EXP)
tamibarotene  (ISO)
tetrahydropalmatine  (ISO)
thioacetamide  (EXP)
triptonide  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
zearalenone  (ISO)
zinc sulfate  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Cytoplasmic dynein. Allan VJ, Biochem Soc Trans. 2011 Oct;39(5):1169-78. doi: 10.1042/BST0391169.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Molecular analysis of a cytoplasmic dynein light intermediate chain reveals homology to a family of ATPases. Hughes SM, etal., J Cell Sci 1995 Jan;108 ( Pt 1):17-24.
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. GOA pipeline RGD automated data pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Growth factor regulation of cytoplasmic dynein intermediate chain subunit expression preceding neurite extension. Salata MW, etal., J Neurosci Res. 2001 Sep 1;65(5):408-16.
11. Recruitment of dynein to late endosomes and lysosomes through light intermediate chains. Tan SC, etal., Mol Biol Cell. 2011 Feb 15;22(4):467-77. doi: 10.1091/mbc.E10-02-0129. Epub 2010 Dec 17.
12. Light intermediate chain 1 defines a functional subfraction of cytoplasmic dynein which binds to pericentrin. Tynan SH, etal., J Biol Chem 2000 Oct 20;275(42):32763-8.
Additional References at PubMed
PMID:12477932   PMID:19540120   PMID:19946888   PMID:21399614   PMID:21700703   PMID:26227614   PMID:30674581   PMID:31505169  


Genomics

Comparative Map Data
Dync1li2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr819538,207 - 561,110 (+)NCBIGRCr8
mRatBN7.219531,783 - 554,670 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl19531,812 - 554,670 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx19527,820 - 550,511 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0191,294,617 - 1,317,308 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.019569,831 - 592,522 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.019740,007 - 762,897 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl19740,028 - 762,897 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.019738,990 - 762,115 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.419469,163 - 510,647 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.119469,162 - 510,647 (+)NCBI
Celera19527,460 - 550,605 (+)NCBICelera
Cytogenetic Map19p14NCBI
DYNC1LI2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381666,720,893 - 66,751,609 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1666,720,893 - 66,751,609 (-)EnsemblGRCh38hg38GRCh38
GRCh371666,754,796 - 66,785,512 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361665,312,300 - 65,343,026 (-)NCBINCBI36Build 36hg18NCBI36
Build 341665,312,299 - 65,343,026NCBI
Celera1651,262,971 - 51,293,905 (-)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1652,629,870 - 52,660,679 (-)NCBIHuRef
CHM1_11668,161,883 - 68,192,604 (-)NCBICHM1_1
T2T-CHM13v2.01672,515,191 - 72,545,899 (-)NCBIT2T-CHM13v2.0
Dync1li2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398105,144,306 - 105,170,415 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8105,144,312 - 105,169,679 (-)EnsemblGRCm39 Ensembl
GRCm388104,417,674 - 104,443,050 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8104,417,680 - 104,443,047 (-)EnsemblGRCm38mm10GRCm38
MGSCv378106,941,574 - 106,966,947 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368107,308,253 - 107,332,134 (-)NCBIMGSCv36mm8
Celera8108,648,540 - 108,674,331 (-)NCBICelera
Cytogenetic Map8D3NCBI
cM Map853.04NCBI
Dync1li2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543323,262,981 - 23,287,067 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543323,262,981 - 23,286,506 (-)NCBIChiLan1.0ChiLan1.0
DYNC1LI2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21876,223,554 - 76,254,408 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11682,135,962 - 82,166,761 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01647,038,975 - 47,069,849 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11666,141,323 - 66,170,693 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1666,141,323 - 66,170,693 (-)Ensemblpanpan1.1panPan2
DYNC1LI2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1582,539,880 - 82,566,689 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl582,539,876 - 82,563,905 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha582,528,033 - 82,555,123 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0582,976,226 - 83,003,337 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl582,976,246 - 83,003,337 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1582,799,354 - 82,826,459 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0582,486,217 - 82,513,307 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0583,124,764 - 83,151,903 (+)NCBIUU_Cfam_GSD_1.0
Dync1li2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934942,552,874 - 42,576,200 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647517,012,832 - 17,036,392 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647517,012,911 - 17,036,290 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DYNC1LI2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl627,416,477 - 27,446,360 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1627,416,475 - 27,446,172 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
DYNC1LI2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1552,416,645 - 52,448,754 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl552,419,479 - 52,448,901 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604723,462,778 - 23,495,331 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dync1li2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474619,728,018 - 19,750,640 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474619,727,861 - 19,752,220 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dync1li2
51 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:448
Count of miRNA genes:233
Interacting mature miRNAs:310
Transcripts:ENSRNOT00000034472
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411590Foco7Food consumption QTL 76.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)19124688055Rat
10054132Srcrt9Stress Responsive Cort QTL 92.870.0017blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19127355345Rat
631678Cm9Cardiac mass QTL 94.270.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)19128982497Rat
631681Cm12Cardiac mass QTL 123.330.00053heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)19128982497Rat
1549847Bss8Bone structure and strength QTL 84lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)19131963836Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19136824771Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19136824771Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19136824771Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19136824771Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000034472   ⟹   ENSRNOP00000029646
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl19531,999 - 554,669 (+)Ensembl
Rnor_6.0 Ensembl19740,227 - 762,897 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000075978   ⟹   ENSRNOP00000068436
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl19531,986 - 554,670 (+)Ensembl
Rnor_6.0 Ensembl19752,151 - 760,090 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000076337
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl19753,492 - 756,193 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000076353
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl19758,190 - 760,588 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000076560   ⟹   ENSRNOP00000067912
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl19755,460 - 760,243 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000076604   ⟹   ENSRNOP00000068268
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl19531,986 - 554,670 (+)Ensembl
Rnor_6.0 Ensembl19740,028 - 761,527 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000076742   ⟹   ENSRNOP00000067920
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl19531,812 - 551,115 (+)Ensembl
Rnor_6.0 Ensembl19740,125 - 760,168 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000097230   ⟹   ENSRNOP00000082247
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl19531,990 - 553,322 (+)Ensembl
RefSeq Acc Id: NM_001398670   ⟹   NP_001385599
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr819538,427 - 561,110 (+)NCBI
mRatBN7.219531,986 - 554,670 (+)NCBI
RefSeq Acc Id: NM_031026   ⟹   NP_112288
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr819538,427 - 561,110 (+)NCBI
mRatBN7.219531,986 - 554,670 (+)NCBI
Rnor_6.019740,227 - 762,896 (+)NCBI
Rnor_5.019738,990 - 762,115 (+)NCBI
RGSC_v3.419469,163 - 510,647 (+)RGD
Celera19527,460 - 550,605 (+)RGD
Sequence:
RefSeq Acc Id: XM_006255054   ⟹   XP_006255116
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr819538,207 - 561,110 (+)NCBI
mRatBN7.219531,783 - 554,670 (+)NCBI
Rnor_6.019740,007 - 762,897 (+)NCBI
Rnor_5.019738,990 - 762,115 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039098021   ⟹   XP_038953949
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr819538,207 - 555,379 (+)NCBI
mRatBN7.219531,783 - 548,171 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_112288   ⟸   NM_031026
- Peptide Label: isoform 2
- UniProtKB: Q62698 (UniProtKB/Swiss-Prot),   A6JXV7 (UniProtKB/TrEMBL),   A0A096MKA1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006255116   ⟸   XM_006255054
- Peptide Label: isoform X1
- UniProtKB: A0A096MKA1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000068436   ⟸   ENSRNOT00000075978
RefSeq Acc Id: ENSRNOP00000029646   ⟸   ENSRNOT00000034472
RefSeq Acc Id: ENSRNOP00000068268   ⟸   ENSRNOT00000076604
RefSeq Acc Id: ENSRNOP00000067920   ⟸   ENSRNOT00000076742
RefSeq Acc Id: ENSRNOP00000067912   ⟸   ENSRNOT00000076560
RefSeq Acc Id: XP_038953949   ⟸   XM_039098021
- Peptide Label: isoform X2
RefSeq Acc Id: ENSRNOP00000082247   ⟸   ENSRNOT00000097230
RefSeq Acc Id: NP_001385599   ⟸   NM_001398670
- Peptide Label: isoform 1
- UniProtKB: Q5D023 (UniProtKB/TrEMBL),   A0A096MKA1 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q62698-F1-model_v2 AlphaFold Q62698 1-497 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700919
Promoter ID:EPDNEW_R11434
Type:multiple initiation site
Name:Dync1li2_1
Description:dynein, cytoplasmic 1 light intermediate chain 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.019740,222 - 740,282EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621130 AgrOrtholog
BioCyc Gene G2FUF-6643 BioCyc
Ensembl Genes ENSRNOG00000025791 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00060013394 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000034472 ENTREZGENE
  ENSRNOT00000034472.5 UniProtKB/Swiss-Prot
  ENSRNOT00000075978.3 UniProtKB/TrEMBL
  ENSRNOT00000076604 ENTREZGENE
  ENSRNOT00000076604.3 UniProtKB/TrEMBL
  ENSRNOT00000076742.3 UniProtKB/TrEMBL
  ENSRNOT00000097230.1 UniProtKB/TrEMBL
  ENSRNOT00060022830 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7115029 IMAGE-MGC_LOAD
InterPro Dynein1_light_intermed_chain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Dynein_light_int_chain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:81655 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:108664 IMAGE-MGC_LOAD
NCBI Gene 81655 ENTREZGENE
PANTHER CYTOPLASMIC DYNEIN 1 LIGHT INTERMEDIATE CHAIN 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12688 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DLIC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Dync1li2 PhenoGen
RatGTEx ENSRNOG00000025791 RatGTEx
  ENSRNOG00060013394 RatGTEx
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A096MIY2_RAT UniProtKB/TrEMBL
  A0A096MKA1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6G764_RAT UniProtKB/TrEMBL
  A6JXV7 ENTREZGENE, UniProtKB/TrEMBL
  DC1L2_RAT UniProtKB/Swiss-Prot
  Q5D023 ENTREZGENE, UniProtKB/TrEMBL
  Q62698 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-19 Dync1li2  dynein, cytoplasmic 1 light intermediate chain 2  Dncli2  dynein, cytoplasmic, light intermediate polypeptide 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 Dncli2  dynein, cytoplasmic, light intermediate polypeptide 2    LIC-2 dynein light intermediate chain 53/55  Name updated 1299863 APPROVED
2002-08-07 Dncli2  LIC-2 dynein light intermediate chain 53/55      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_product region of cDNA shares homology with ABC transporter family of ATPases 728207
gene_protein cDNA sequence contains 497 codon open reading frame, encodes a 55 kDa polypeptide 728207