| 1600363 | Hc6 | Hypercalciuria QTL 6 | 2.7 | | Renal function | calcium excretion | 1 | 112148733 | 250430505 | Rat |
| 724531 | Uae5 | Urinary albumin excretion QTL 5 | 4 | | Renal function | urine albumin level | 1 | 153578442 | 259173490 | Rat |
| 1354610 | Bw34 | Body weight QTL 34 | 4.1 | | Body weight | | 1 | 154074905 | 263699089 | Rat |
| 1354646 | Kidm18 | Kidney mass QTL 18 | 5.7 | | Kidney mass | right kidney mass adjusted for body weight | 1 | 154074905 | 263699089 | Rat |
| 1354661 | Bw33 | Body weight QTL 33 | 5.2 | | Body weight | | 1 | 154074905 | 263699089 | Rat |
| 1354580 | Scort1 | Serum corticosterone level QTL 1 | 3.4 | | Hormone level | corticosterone | 1 | 159782445 | 263699089 | Rat |
| 2292220 | Bp306 | Blood pressure QTL 306 | 3.47 | .00087 | Blood pressure | systolic | 1 | 167931220 | 250119874 | Rat |
| 738032 | Hcas5 | Hepatocarcinoma susceptibility QTL 5 | 3.12 | | Liver tumor susceptibility | nodule number | 1 | 180678929 | 265343617 | Rat |
| 1354624 | Cm35 | Cardiac mass QTL35 | 5.7 | | Cardiac mass | left ventricle adjusted for body weight | 1 | 181524849 | 263699089 | Rat |
| 1354652 | Kidm20 | Kidney mass QTL 20 | 4.3 | | Kidney mass | left kidney mass adjusted for body weight | 1 | 181524849 | 263699089 | Rat |
| 634321 | Hc1 | Hypercalciuria QTL 1 | 2.91 | | Renal function | calcium excretion | 1 | 183163129 | 248833756 | Rat |
| 1578759 | Uae30 | Urinary albumin excretion QTL 30 | 3.3 | .003 | Renal function | urine albumin level | 1 | 183946692 | 267910886 | Rat |
| 1578763 | Kidm29 | Kidney mass QTL 29 | 3.3 | .0001 | Kidney mass | | 1 | 183946692 | 267910886 | Rat |
| 1358898 | Bp255 | Blood pressure QTL 255 | 3.6 | | Blood pressure | post nitric oxide system block | 1 | 195927908 | 252497797 | Rat |
| 1358191 | Ept10 | Estrogen-induced pituitary tumorigenesis QTL 10 | 3.8 | | Gland mass | pituitary | 1 | 197770157 | 250119666 | Rat |
| 1600388 | Niddm67 | Non-insulin dependent diabetes mellitus QTL 67 | 5.84 | .000004 | Glucose level | | 1 | 200882874 | 264367394 | Rat |
| 1600395 | Niddm69 | Non-insulin dependent diabetes mellitus QTL 69 | 4.14 | .0002 | Insulin level | | 1 | 200882874 | 264367394 | Rat |
| 1600396 | Niddm68 | Non-insulin dependent diabetes mellitus QTL 68 | 4.97 | .0003 | Glucose level | | 1 | 200882874 | 264367394 | Rat |
| 634313 | Niddm43 | Non-insulin dependent diabetes mellitus QTL 43 | | | Glucose level | | 1 | 204280278 | 267111153 | Rat |
| 2293655 | Bss36 | Bone structure and strength QTL 36 | 10.66 | .0001 | Bone strength | | 1 | 207376933 | 252376933 | Rat |
| 2293674 | Bss39 | Bone structure and strength QTL 39 | 7.1 | .0001 | Bone strength | | 1 | 207376933 | 252376933 | Rat |
| 2293694 | Bss38 | Bone structure and strength QTL 38 | 7.05 | .0001 | Bone strength | | 1 | 207376933 | 252376933 | Rat |
| 2300175 | Bmd40 | Bone mineral density QTL 40 | 15.4 | .0001 | Bone mineral density | | 1 | 207376933 | 252376933 | Rat |
| 2292216 | Bw80 | Body weight QTL 80 | 3.23 | .0019 | Body weight | | 1 | 219629755 | 250119874 | Rat |
| 724538 | Kidm1 | Kidney mass QTL 1 | 3.2 | | Kidney mass | | 1 | 219804771 | 259173490 | Rat |
| 1598821 | Rf55 | Renal function QTL 55 | 6.3 | | Renal function | renal blood flow | 1 | 224420592 | 265343617 | Rat |
| 61400 | Niddm1 | Non-insulin dependent diabetes mellitus QTL 1 | 11 | | Glucose level | postprandial | 1 | 224426266 | 252340527 | Rat |
| 724533 | Rf51 | Renal function QTL 51 | 5.3 | .0002 | Renal function | renal blood flow | 1 | 224426393 | 263698966 | Rat |
| 634343 | Hcar6 | Hepatocarcinoma resistance QTL 6 | | | Liver tumor resistance | 3-methyl-4-dimethylaminoazobenzene induced | 1 | 224822211 | 267910886 | Rat |
| 1549911 | Stresp9 | Stress response QTL 9 | 6.13 | .0035 | Stress response | defensive burying - approach | 1 | 225366432 | 267910886 | Rat |
| 2303579 | Insul12 | Insulin level QTL 12 | 4 | | Insulin level | | 1 | 225366432 | 267910886 | Rat |
| 2303581 | Bw85 | Body weight QTL 85 | 4 | | Body weight | | 1 | 225366432 | 267910886 | Rat |
| 2303576 | Gluco45 | Glucose level QTL 45 | 4 | | Glucose level | post-restraint | 1 | 225366432 | 267910886 | Rat |
| 2303592 | Gluco51 | Glucose level QTL 51 | 3 | | Glucose level | post-prandial | 1 | 225366432 | 267910886 | Rat |
| 631835 | Scl67 | Serum cholesterol level QTL 67 | 4.27 | .0000116 | Lipid level | cholesterol | 1 | 226083572 | 267910886 | Rat |
| 731175 | Uae20 | Urinary albumin excretion QTL 20 | 3.5 | .0018 | Renal function | urine albumin level | 1 | 227005311 | 267111153 | Rat |
| 1600392 | Bw123 | Body weight QTL 123 | | .001 | Body weight | | 1 | 229633779 | 267910886 | Rat |
| 2293700 | Bmd27 | Bone mineral density QTL 27 | 6.6 | .0001 | Bone mineral density | | 1 | 229876870 | 249951685 | Rat |
| 2293701 | Bmd34 | Bone mineral density QTL 34 | 8.3 | .0001 | Bone mineral density | Femoral neck ultimate force | 1 | 229876870 | 249951685 | Rat |
| 631843 | Bw116 | Body weight QTL 116 | 4.1 | .016 | Body fat amount | | 1 | 229876870 | 267593558 | Rat |
| 734767 | Niddm57 | Non-insulin dependent diabetes mellitus QTL 57 | | | Body weight | | 1 | 229876870 | 267593558 | Rat |
| 734769 | Niddm58 | Non-insulin dependent diabetes mellitus QTL 58 | | | Body weight | | 1 | 230411091 | 267593558 | Rat |
| 631215 | Stl8 | Serum triglyceride level QTL 8 | 9.27 | .0001 | Lipid level | triglyceride | 1 | 230963695 | 267910886 | Rat |
| 1300108 | Rf8 | Renal function QTL 8 | 3.75 | | Renal function | salt-loaded renal vascular resistance | 1 | 234595190 | 267111153 | Rat |
| 2316896 | Gluco57 | Glucose level QTL 57 | 7.2 | | Glucose level | postprandial | 1 | 235098616 | 252340527 | Rat |
| 1578778 | Pur4 | Proteinuria QTL 4 | 3.3 | .003 | Renal function | urine protein level | 1 | 236673382 | 267910886 | Rat |
| 1581544 | Rf52 | Renal function QTL 52 | | .05 | Renal function | urine protein level | 1 | 238613503 | 267111153 | Rat |
| 71112 | Bw115 | Body weight QTL 115 | 6 | .0001 | Body weight | | 1 | 240980321 | 267110921 | Rat |
| 631536 | Lnnr2 | Liver neoplastic nodule remodeling QTL 2 | 2.9 | .0005 | Liver neoplastic nodule remodeling frequency | | 1 | 241199027 | 267910886 | Rat |
| 631690 | Scl5 | Serum cholesterol level QTL 5 | 2.1 | | Lipid level | cholesterol | 1 | 243502887 | 267910886 | Rat |
| 631836 | Stl31 | Serum triglyceride level QTL 31 | 4.64 | .00000487 | Lipid level | triglyceride level | 1 | 244611037 | 267910886 | Rat |
| 631669 | Iddm9 | Insulin dependent diabetes mellitus QTL 9 | 2.8 | .039 | Glucose level | | 1 | 247322146 | 266002939 | Rat |
| 70211 | Niddm24 | Non-insulin dependent diabetes mellitus QTL 24 | 3.79 | | Glucose level | postprandial | 1 | 247322146 | 267111153 | Rat |