Spata7 (spermatogenesis associated 7) - Rat Genome Database

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Gene: Spata7 (spermatogenesis associated 7) Rattus norvegicus
Analyze
Symbol: Spata7
Name: spermatogenesis associated 7
RGD ID: 621010
Description: Involved in spermatogenesis. Predicted to be located in cytosol; microtubule cytoskeleton; and photoreceptor connecting cilium. Predicted to be active in cytoskeleton and photoreceptor cell cilium. Human ortholog(s) of this gene implicated in Leber congenital amaurosis 3. Orthologous to human SPATA7 (spermatogenesis associated 7); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,2',5,5'-tetrachlorobiphenyl; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: fertility related protein WMP1; fertility-related protein WMP1; rat sperm DNA no.3; RSD-3; sperm DNA no.3; spermatogenesis-associated protein 7 homolog; Wmp1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86123,609,519 - 123,655,001 (+)NCBIGRCr8
mRatBN7.26117,879,828 - 117,925,284 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6117,879,823 - 117,925,284 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6118,030,891 - 118,075,861 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06118,327,696 - 118,372,657 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06117,662,562 - 117,707,531 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06122,603,248 - 122,648,718 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6122,603,269 - 122,648,699 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06131,817,495 - 131,862,960 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46122,786,739 - 122,832,181 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16122,796,896 - 122,836,008 (+)NCBI
Celera6115,441,836 - 115,487,163 (+)NCBICelera
Cytogenetic Map6q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. A novel gene, RSD-3/HSD-3.1, encodes a meiotic-related protein expressed in rat and human testis. Zhang X, etal., J Mol Med 2003 Jun;81(6):380-7. Epub 2003 May 8.
Additional References at PubMed
PMID:12477932   PMID:25398945   PMID:29899041  


Genomics

Comparative Map Data
Spata7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86123,609,519 - 123,655,001 (+)NCBIGRCr8
mRatBN7.26117,879,828 - 117,925,284 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6117,879,823 - 117,925,284 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6118,030,891 - 118,075,861 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06118,327,696 - 118,372,657 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06117,662,562 - 117,707,531 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06122,603,248 - 122,648,718 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6122,603,269 - 122,648,699 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06131,817,495 - 131,862,960 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46122,786,739 - 122,832,181 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16122,796,896 - 122,836,008 (+)NCBI
Celera6115,441,836 - 115,487,163 (+)NCBICelera
Cytogenetic Map6q32NCBI
SPATA7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381488,385,657 - 88,470,350 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1488,384,924 - 88,470,350 (+)EnsemblGRCh38hg38GRCh38
GRCh371488,852,001 - 88,904,804 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361487,921,765 - 87,974,557 (+)NCBINCBI36Build 36hg18NCBI36
Build 341487,921,763 - 87,974,553NCBI
Celera1468,897,730 - 68,950,399 (+)NCBICelera
Cytogenetic Map14q31.3NCBI
HuRef1469,022,355 - 69,075,024 (+)NCBIHuRef
CHM1_11488,790,015 - 88,842,671 (+)NCBICHM1_1
T2T-CHM13v2.01482,606,616 - 82,691,159 (+)NCBIT2T-CHM13v2.0
Spata7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391298,594,169 - 98,636,078 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1298,594,416 - 98,636,074 (+)EnsemblGRCm39 Ensembl
GRCm381298,628,129 - 98,669,819 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1298,628,157 - 98,669,815 (+)EnsemblGRCm38mm10GRCm38
MGSCv371299,866,394 - 99,908,025 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361299,029,234 - 99,070,865 (+)NCBIMGSCv36mm8
Celera1299,853,128 - 99,894,750 (+)NCBICelera
Cytogenetic Map12ENCBI
cM Map1249.88NCBI
Spata7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543811,033,998 - 11,069,128 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543811,033,089 - 11,069,178 (+)NCBIChiLan1.0ChiLan1.0
SPATA7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21589,529,105 - 89,582,633 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11488,745,611 - 88,799,135 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01469,002,723 - 69,056,185 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11488,362,737 - 88,415,083 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1488,367,757 - 88,415,045 (+)Ensemblpanpan1.1panPan2
SPATA7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1859,658,295 - 59,697,409 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl859,658,365 - 59,697,318 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha859,236,261 - 59,275,385 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0859,927,670 - 59,966,727 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl859,927,190 - 59,966,727 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1859,606,408 - 59,645,505 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0859,651,851 - 59,691,546 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0859,985,905 - 60,025,002 (+)NCBIUU_Cfam_GSD_1.0
Spata7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864016,157,667 - 16,190,808 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648815,878,158 - 15,911,415 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648815,878,167 - 15,911,301 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPATA7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7110,309,462 - 110,364,033 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17110,309,414 - 110,368,370 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27116,807,810 - 116,862,438 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SPATA7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12466,041,574 - 66,086,963 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2466,041,568 - 66,088,716 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605353,394,391 - 53,444,727 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Spata7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473413,879,522 - 13,943,703 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473413,869,210 - 13,943,864 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Spata7
197 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:28
Count of miRNA genes:24
Interacting mature miRNAs:27
Transcripts:ENSRNOT00000005297
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)672202632130729475Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)672227641130729205Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat
738034Anxrr5Anxiety related response QTL 55.9exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)684130881129130881Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)685140138130140138Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)685140138130140138Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)685311061133478515Rat
1300076Glom8Glomerulus QTL 870.000000009kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)686894788131894788Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)688047916133047916Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)693701310128713626Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)694968928137848904Rat
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)694968928139968928Rat
8552796Vie3Viral induced encephalitis QTL 32.6brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)696833997140994061Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6100364669140994061Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6100671796132340886Rat
1331797Bp213Blood pressure QTL 2133.291arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)6104085867128713626Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6105156861140994061Rat
4145118Mcs26Mammary carcinoma susceptibility QTL 260.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6106752656132339866Rat
737976Pia24Pristane induced arthritis QTL 24joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)6112636280140994061Rat
1298087Iddm18Insulin dependent diabetes mellitus QTL 180.0001urine glucose amount (VT:0001758)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)6116506292130245370Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 4 12 4 4 1 1 74 35 41 11 1
Low 3 39 45 37 19 37 7 10 7
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_138862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006240415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC123293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC078728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK470849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK600391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000005297   ⟹   ENSRNOP00000005297
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6117,879,895 - 117,925,284 (+)Ensembl
Rnor_6.0 Ensembl6122,603,269 - 122,648,699 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000096420   ⟹   ENSRNOP00000096066
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6117,879,895 - 117,925,284 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000097471   ⟹   ENSRNOP00000091876
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6117,883,199 - 117,925,183 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000098377   ⟹   ENSRNOP00000093644
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6117,879,894 - 117,925,284 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000104996   ⟹   ENSRNOP00000091805
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6117,879,823 - 117,925,284 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000105094   ⟹   ENSRNOP00000084351
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6117,879,827 - 117,925,284 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000108318   ⟹   ENSRNOP00000094270
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6117,879,840 - 117,925,284 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000118680   ⟹   ENSRNOP00000085724
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6117,903,043 - 117,925,284 (+)Ensembl
RefSeq Acc Id: NM_138862   ⟹   NP_620217
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86123,609,614 - 123,655,001 (+)NCBI
mRatBN7.26117,879,895 - 117,925,284 (+)NCBI
Rnor_6.06122,603,331 - 122,648,718 (+)NCBI
Rnor_5.06131,817,495 - 131,862,960 (+)NCBI
RGSC_v3.46122,786,739 - 122,832,181 (+)RGD
Celera6115,441,836 - 115,487,163 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006240413   ⟹   XP_006240475
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86123,609,519 - 123,654,902 (+)NCBI
mRatBN7.26117,879,831 - 117,925,284 (+)NCBI
Rnor_6.06122,603,248 - 122,648,718 (+)NCBI
Rnor_5.06131,817,495 - 131,862,960 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006240414   ⟹   XP_006240476
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86123,609,559 - 123,654,902 (+)NCBI
mRatBN7.26117,879,839 - 117,925,284 (+)NCBI
Rnor_6.06122,603,249 - 122,648,718 (+)NCBI
Rnor_5.06131,817,495 - 131,862,960 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006240415   ⟹   XP_006240477
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86123,609,519 - 123,654,902 (+)NCBI
mRatBN7.26117,879,831 - 117,925,284 (+)NCBI
Rnor_6.06122,603,248 - 122,648,718 (+)NCBI
Rnor_5.06131,817,495 - 131,862,960 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008764737   ⟹   XP_008762959
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86123,609,560 - 123,654,902 (+)NCBI
mRatBN7.26117,879,839 - 117,925,284 (+)NCBI
Rnor_6.06122,603,277 - 122,648,718 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039111753   ⟹   XP_038967681
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86123,609,582 - 123,654,902 (+)NCBI
mRatBN7.26117,879,828 - 117,925,284 (+)NCBI
RefSeq Acc Id: XM_039111756   ⟹   XP_038967684
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86123,609,575 - 123,654,902 (+)NCBI
mRatBN7.26117,879,860 - 117,925,284 (+)NCBI
RefSeq Acc Id: XM_063261531   ⟹   XP_063117601
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86123,609,577 - 123,654,902 (+)NCBI
RefSeq Acc Id: XM_063261532   ⟹   XP_063117602
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86123,615,996 - 123,654,902 (+)NCBI
RefSeq Acc Id: XM_063261533   ⟹   XP_063117603
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86123,609,530 - 123,654,902 (+)NCBI
RefSeq Acc Id: XM_063261534   ⟹   XP_063117604
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86123,609,559 - 123,654,902 (+)NCBI
RefSeq Acc Id: XM_063261535   ⟹   XP_063117605
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86123,609,550 - 123,654,902 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_620217   ⟸   NM_138862
- UniProtKB: F1LP56 (UniProtKB/TrEMBL),   A6JEE5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240475   ⟸   XM_006240413
- Peptide Label: isoform X2
- UniProtKB: A0A8I6GBQ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240476   ⟸   XM_006240414
- Peptide Label: isoform X5
- UniProtKB: Q9R0A3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006240477   ⟸   XM_006240415
- Peptide Label: isoform X6
- UniProtKB: Q9R0A3 (UniProtKB/Swiss-Prot),   A0A8I6GKR6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008762959   ⟸   XM_008764737
- Peptide Label: isoform X9
- UniProtKB: A0A8I5ZZV7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000005297   ⟸   ENSRNOT00000005297
RefSeq Acc Id: XP_038967681   ⟸   XM_039111753
- Peptide Label: isoform X1
- UniProtKB: A6JEE5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038967684   ⟸   XM_039111756
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AZX0 (UniProtKB/TrEMBL),   A0A8I5ZZV7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000091876   ⟸   ENSRNOT00000097471
RefSeq Acc Id: ENSRNOP00000084351   ⟸   ENSRNOT00000105094
RefSeq Acc Id: ENSRNOP00000094270   ⟸   ENSRNOT00000108318
RefSeq Acc Id: ENSRNOP00000096066   ⟸   ENSRNOT00000096420
RefSeq Acc Id: ENSRNOP00000091805   ⟸   ENSRNOT00000104996
RefSeq Acc Id: ENSRNOP00000093644   ⟸   ENSRNOT00000098377
RefSeq Acc Id: ENSRNOP00000085724   ⟸   ENSRNOT00000118680
RefSeq Acc Id: XP_063117603   ⟸   XM_063261533
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063117605   ⟸   XM_063261535
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063117604   ⟸   XM_063261534
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063117601   ⟸   XM_063261531
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063117602   ⟸   XM_063261532
- Peptide Label: isoform X3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9R0A3-F1-model_v2 AlphaFold Q9R0A3 1-526 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694768
Promoter ID:EPDNEW_R5292
Type:initiation region
Name:Spata7_1
Description:spermatogenesis associated 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.06122,603,296 - 122,603,356EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621010 AgrOrtholog
BioCyc Gene G2FUF-36536 BioCyc
Ensembl Genes ENSRNOG00000003955 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005297 ENTREZGENE
  ENSRNOT00000005297.7 UniProtKB/TrEMBL
  ENSRNOT00000096420.1 UniProtKB/TrEMBL
  ENSRNOT00000097471.1 UniProtKB/TrEMBL
  ENSRNOT00000098377.1 UniProtKB/TrEMBL
  ENSRNOT00000104996.1 UniProtKB/TrEMBL
  ENSRNOT00000105094.1 UniProtKB/TrEMBL
  ENSRNOT00000108318.1 UniProtKB/TrEMBL
  ENSRNOT00000118680.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7114267 IMAGE-MGC_LOAD
InterPro SPATA7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:192225 UniProtKB/TrEMBL
MGC_CLONE MGC:93176 IMAGE-MGC_LOAD
NCBI Gene 192225 ENTREZGENE
PANTHER PTHR14917 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPERMATOGENESIS-ASSOCIATED PROTEIN 7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam HSD3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Spata7 PhenoGen
RatGTEx ENSRNOG00000003955 RatGTEx
UniProt A0A8I5ZZV7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ACK6_RAT UniProtKB/TrEMBL
  A0A8I6ACS9_RAT UniProtKB/TrEMBL
  A0A8I6AQC2_RAT UniProtKB/TrEMBL
  A0A8I6AZX0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GBQ8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GKR6 ENTREZGENE, UniProtKB/TrEMBL
  A6JEE5 ENTREZGENE, UniProtKB/TrEMBL
  F1LP56 ENTREZGENE, UniProtKB/TrEMBL
  Q6AZ59_RAT UniProtKB/TrEMBL
  Q9R0A3 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-07-08 Spata7  spermatogenesis associated 7  Wmp1  fertility related protein WMP1  Symbol and Name updated 1299863 APPROVED
2002-08-07 Wmp1  fertility related protein WMP1      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression expressed only in primary spermatocytes during meiosis division I 1302279