Spata2 (spermatogenesis associated 2)

Gene: Spata2 (spermatogenesis associated 2) Rattus norvegicus

Analyze

Symbol:

Spata2

Name:

spermatogenesis associated 2

RGD ID:

620754

Description:

Predicted to enable signaling receptor complex adaptor activity and ubiquitin-specific protease binding activity. Predicted to be involved in regulation of inflammatory response; regulation of necroptotic process; and regulation of tumor necrosis factor-mediated signaling pathway. Predicted to act upstream of or within seminiferous tubule development and spermatogenesis. Predicted to be located in fibrillar center and nucleoplasm. Predicted to be active in cytoplasm. Orthologous to human SPATA2 (spermatogenesis associated 2); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; ammonium chloride.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

MGC93291; spermatogenesis-associated protein 2

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SPATA2 (spermatogenesis associated 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Spata2 (spermatogenesis associated 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Spata2 (spermatogenesis associated 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SPATA2 (spermatogenesis associated 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SPATA2 (spermatogenesis associated 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Spata2 (spermatogenesis associated 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SPATA2 (spermatogenesis associated 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SPATA2 (spermatogenesis associated 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Spata2 (spermatogenesis associated 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SPATA2 (spermatogenesis associated 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Spata2 (spermatogenesis associated 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	spata2 (spermatogenesis associated 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	tamo	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	spata2	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	176,621,974 - 176,639,784 (-)	NCBI		GRCr8
mRatBN7.2	3	156,202,962 - 156,213,283 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	156,202,967 - 156,211,705 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	159,999,560 - 160,007,957 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	168,498,614 - 168,507,011 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	166,240,308 - 166,248,705 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	164,229,211 - 164,239,483 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	164,230,852 - 164,239,250 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	170,379,958 - 170,390,225 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	158,632,425 - 158,640,824 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	158,538,461 - 158,546,860 (-)	NCBI
Celera	3	154,784,243 - 154,792,642 (-)	NCBI		Celera
Cytogenetic Map	3	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

arsane (ISO)

arsenic atom (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP)

bisphenol F (ISO)

butanal (ISO)

chlorpyrifos (EXP,ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

cypermethrin (ISO)

dexamethasone (ISO)

dibutyl phthalate (EXP)

dicrotophos (ISO)

dimethylarsinous acid (ISO)

diquat (ISO)

doxorubicin (EXP,ISO)

ethanol (ISO)

flavonoids (EXP)

folic acid (ISO)

FR900359 (ISO)

gentamycin (EXP)

gold atom (ISO)

gold(0) (ISO)

indometacin (ISO)

leflunomide (ISO)

paracetamol (EXP,ISO)

sunitinib (ISO)

tamoxifen (ISO)

tetrachloromethane (EXP)

thimerosal (ISO)

thioacetamide (EXP)

trichloroethene (EXP)

urethane (ISO)

valproic acid (ISO)

zearalenone (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

necroptotic process (ISO)

regulation of inflammatory response (ISO,ISS)

regulation of necroptotic process (IBA,IEA,ISO,ISS)

regulation of tumor necrosis factor-mediated signaling pathway (IBA,IEA,ISO,ISS)

seminiferous tubule development (ISO)

spermatogenesis (ISO)

Cellular Component

cytoplasm (IBA,IEA,ISO)

fibrillar center (IEA,ISO)

nucleoplasm (IEA,ISO)

Molecular Function

protein binding (ISO)

protein-containing complex binding (ISO)

signaling receptor complex adaptor activity (ISO)

ubiquitin-specific protease binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
4.	Evidence for FSH-dependent upregulation of SPATA2 (spermatogenesis-associated protein 2).	Onisto M, etal., Biochem Biophys Res Commun 2001 Apr 27;283(1):86-92.
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:10222154	PMID:25931508	PMID:27307491	PMID:27458237	PMID:27545878	PMID:27591049	PMID:28701375	PMID:29025062	PMID:34075523

Genomics

Comparative Map Data

Spata2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	176,621,974 - 176,639,784 (-)	NCBI		GRCr8
mRatBN7.2	3	156,202,962 - 156,213,283 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	156,202,967 - 156,211,705 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	159,999,560 - 160,007,957 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	168,498,614 - 168,507,011 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	166,240,308 - 166,248,705 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	164,229,211 - 164,239,483 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	164,230,852 - 164,239,250 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	170,379,958 - 170,390,225 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	158,632,425 - 158,640,824 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	158,538,461 - 158,546,860 (-)	NCBI
Celera	3	154,784,243 - 154,792,642 (-)	NCBI		Celera
Cytogenetic Map	3	q42	NCBI

SPATA2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	49,903,391 - 49,915,529 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	49,903,391 - 49,915,529 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	48,519,928 - 48,532,066 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	47,953,335 - 47,965,475 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	20	47,953,337 - 47,965,475	NCBI
Celera	20	45,224,519 - 45,236,653 (-)	NCBI		Celera
Cytogenetic Map	20	q13.13	NCBI
HuRef	20	45,269,043 - 45,281,171 (-)	NCBI		HuRef
CHM1_1	20	48,424,471 - 48,436,626 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	20	51,672,830 - 51,685,863 (-)	NCBI		T2T-CHM13v2.0

Spata2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	167,323,053 - 167,334,804 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	167,323,053 - 167,334,807 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	167,481,136 - 167,493,238 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	167,481,133 - 167,492,887 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	167,306,636 - 167,318,374 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	167,172,600 - 167,184,068 (-)	NCBI		MGSCv36	mm8
Celera	2	173,423,092 - 173,434,830 (-)	NCBI		Celera
Cytogenetic Map	2	H3	NCBI
cM Map	2	87.23	NCBI

Spata2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955445	8,281,545 - 8,292,951 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955445	8,281,280 - 8,292,951 (+)	NCBI	ChiLan1.0	ChiLan1.0

SPATA2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	55,649,232 - 55,662,902 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	55,643,744 - 55,655,402 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	46,245,560 - 46,257,656 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	47,307,731 - 47,320,315 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	47,307,731 - 47,320,343 (-)	Ensembl	panpan1.1		panPan2

SPATA2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	36,443,856 - 36,454,264 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	36,445,870 - 36,448,585 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	35,685,192 - 35,695,734 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	37,147,635 - 37,158,176 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	37,147,642 - 37,158,050 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	36,389,022 - 36,399,560 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	36,522,317 - 36,532,852 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	37,065,662 - 37,076,202 (-)	NCBI		UU_Cfam_GSD_1.0

Spata2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	189,052,342 - 189,059,401 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936514	4,508,837 - 4,513,264 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936514	4,506,015 - 4,513,040 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SPATA2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	51,489,701 - 51,500,669 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	51,489,696 - 51,500,900 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

SPATA2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	14,074,761 - 14,087,322 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	14,075,621 - 14,087,350 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666050	62,554,506 - 62,566,885 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Spata2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624790	5,553,082 - 5,572,250 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Spata2
22 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	98
Count of miRNA genes:	71
Interacting mature miRNAs:	90
Transcripts:	ENSRNOT00000012604
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	31172320	163586636	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	43827364	169034231	Rat
1581568	Rf53	Renal function QTL 53			urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	3	56395968	161299569	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	59242096	157323038	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	94856903	159898684	Rat
2312659	Slep7	Serum leptin concentration QTL 7		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	3	98535255	168026850	Rat
2312670	Bw94	Body weight QTL 94		0.01	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	3	98535255	168026850	Rat
2312673	Scl63	Serum cholesterol level QTL 63		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	98535255	168026850	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	98535386	161695835	Rat
1578754	Stresp16	Stress response QTL 16	4	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	3	112681431	157681431	Rat
1576306	Schws3	Schwannoma susceptibility QTL 3		0.001	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	3	118839124	163839124	Rat
1598877	Bp285	Blood pressure QTL 285	1.5	0.03	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	120538241	165538241	Rat
1300159	Kidm4	Kidney mass QTL 4	3.83		kidney mass (VT:0002707)	right kidney wet weight to body weight ratio (CMO:0001953)	3	121056165	157309487	Rat
10755461	Coatc16	Coat color QTL 16			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	3	122438700	167438700	Rat
631541	Bp81	Blood pressure QTL 81	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	124122556	169034231	Rat
2303620	Vencon4	Ventilatory control QTL 4	3.9		respiration trait (VT:0001943)	tidal volume (CMO:0000222)	3	127162703	168026850	Rat
631673	Iddm13	Insulin dependent diabetes mellitus QTL 13	1.3	0.663	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	3	130193298	161695983	Rat
1578656	Vnigr2	Vascular neointimal growth QTL 2	4.2		artery morphology trait (VT:0002191)	lesioned artery residual lumen area (CMO:0001417)	3	130656562	169034231	Rat
1578653	Vnigr3	Vascular neointimal growth QTL 3	3.1		artery morphology trait (VT:0002191)	artery neointimal hyperplastic lesion area (CMO:0001414)	3	130656562	169034231	Rat
9589106	Insul23	Insulin level QTL 23	13.86	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	3	131635904	169034231	Rat
2298477	Eau4	Experimental allergic uveoretinitis QTL 4		0.0011	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	3	137398739	169034231	Rat
8552952	Pigfal13	Plasma insulin-like growth factor 1 level QTL 13			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	3	138799500	169034231	Rat
1298068	Bp167	Blood pressure QTL 167		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	141074471	169034231	Rat
1331726	Bp208	Blood pressure QTL 208	3.129		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	141339013	162184794	Rat
2317883	Alcrsp26	Alcohol response QTL 26	1.8	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	3	145526770	169034231	Rat
12879871	Am7	Aortic mass QTL 7		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	145925360	166177555	Rat
12879872	Cm97	Cardiac mass QTL 97		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	145925360	166177555	Rat
12879873	Cm96	Cardiac mass QTL 96		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	145925360	166177555	Rat
12879874	Cm98	Cardiac mass QTL 98		0.005	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	145925360	166177555	Rat
12879875	Kidm64	Kidney mass QTL 64		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	145925360	166177555	Rat
12879876	Bw182	Body weight QTL 182		0.003	body mass (VT:0001259)	body weight (CMO:0000012)	3	145925360	166177555	Rat
2301411	Bp320	Blood pressure QTL 320		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	145925360	166177555	Rat
1300113	Bp176	Blood pressure QTL 176	3.9		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	145956084	157309487	Rat
1598854	Memor10	Memory QTL 10	2		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	3	145956084	161299569	Rat
8552791	Vie2	Viral induced encephalitis QTL 2	4.1		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	3	145956084	169034231	Rat
1578666	Vnigr1	Vascular neointimal growth QTL 1	4.6		artery morphology trait (VT:0002191)	artery lumen area (CMO:0001409)	3	149040888	168026850	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	26	8	2	12	2			74	23	35	11
Low		17	49	39	7	39	8	11		12	6		8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_053675	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235636	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104092	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104093	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC131854	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF123651	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC081752	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000012604 ⟹ ENSRNOP00000012604

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	156,202,967 - 156,211,705 (-)	Ensembl
Rnor_6.0 Ensembl	3	164,230,852 - 164,239,250 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000118290 ⟹ ENSRNOP00000088233

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	156,203,338 - 156,211,705 (-)	Ensembl

RefSeq Acc Id:

NM_053675 ⟹ NP_446127

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	176,623,614 - 176,632,013 (-)	NCBI
mRatBN7.2	3	156,204,602 - 156,213,001 (-)	NCBI
Rnor_6.0	3	164,230,851 - 164,239,250 (-)	NCBI
Rnor_5.0	3	170,379,958 - 170,390,225 (-)	NCBI
RGSC_v3.4	3	158,632,425 - 158,640,824 (-)	RGD
Celera	3	154,784,243 - 154,792,642 (-)	RGD

Sequence:

show sequence

CCCGGGGGCAGGCACCGCGCTGTGGCTCTCAGCCGGGAGGGGAGGCTGACCTGGTTTTGGACTC
ACCGAGTGACCTTGGCTGAGTCGCTCTGCCTCAGAATCCTTGGTCTCCAGGTCTGTGAGGAGGG
ACGAGGCGGCCTTCCGGGGCCGCGGTGGGCGTGGAAAGAGGACACGGTTGTTGCACGGTGTCGG
GGTGCAGCAGAGCATGCGCTGGTCCATGGGCACCATGCCAGTTCTTCATGTGATGTGCCAGCCT
CCAGCCCCAGAGCCATGGGGGAGATGAGGTAGCCCTTGGGTTTGATTTGGGGAAGCCCAGTTCA
ATGGATACGAAGTACAAGGATGACTTATTCCGGAAGTACGTGCAGTTCCATGAGGGCAAAGTGG
ACACCACCCCCGGCAAACAGTCTGGCAGCGATGAGTACCTGCGCGTGGCAGCTGCCACCCTGCT
CAGCCTGCACAAGGTGGACCCTTTATATCGATTTCGGCTGATCCAGTTTTATGAGGTGGTGGAG
AGCTCCCTCCGCTCGCTGAGTAGCTCCAGCCTGAGCGCTCTGCACTGCGCCTTCAGCATGCTGG
AGACAATGGCCATCAACCTCTTCCTGTTCCCCTGGAAGAAGGAGTTCCGCAGCATCAAGACCTA
CACGGGCCCTTTTGTTTACTATGTCAAGTCCACGTTGCTGGAGAAGGACATCCGAGCCATTCTA
AAGTTCATGGGCTACGAACCTGAGTTGGGGACTGCATACAAACTCAAAGAGCTTGTGGAGTCCC
TCCAGGTGAAGATGGTCTCCTTTGAGCTCTTCCTGGCCAAGGTCGAGTGTGAGCAGATGCTGGG
AATACACTCACAGGTAAAGGACAAGGGCTATTCAGAGCTGGATGTGGTGACTGAGCGCAAGAGC
AGCACAGAGGATGCACGTGGGTGCTCAGATGCCCTGCGGAGGCGGGCTGAGAGTCGAGAGCACC
TGACCACTTCCATGGCTCGTGTGGCACTCCAGAAGTCAGCCAGTGAGCGCGCAGCCAAGGACTA
CTACAAGCCCCGAGTGACCAAACCCTCCAGGTCGGTGGATGCCTACGACAGCTACTGGGAAAGC
AGGAAGCCCCCCTCAAAGGCCTCACTGAGTCTGCGCAAGGAGCCCCTGGCTATGGATGTAGGGG
AAGACTTGAAGGATGAGATCATCCGCCCATCCCCCTCATTGCTGACCATGTCCAGCTCCCCCCA
TGGTAGCCCTGATGACCTTCCCTCCATCTCCCCCATCAATGGCCTGGGCCTTCTTCGTAGCACG
TACTTCCCCACTCAGGATGACGTGGACCTGTACACGGATTCCGAACCCAGGGCCACCTACCGGA
GGCAAGATGCTCTGCGGTCAGATATATGGCTGGTCAAAAATGATGCCCACTCCATCTACCACAA
GCGTTCACCCCCCACCAAAGAGTCTGCCCTCTCCAAGTGCCAAAACTGCGGCCTGTCCTGCAGC
TCCTCCCTCTGTCAGCGCTGTGACAGTGTCTGTCCTTCGGCCTCCAAGCCCAGCGGTTTTCCCA
GCAAGGCCTCTGCACACGACAGCCTGGTCCATGGGGCACCTATGCGGGAGAAATATGTGGGACA
GACTCAGGGCCTTGACCGGCTGGCAACTGTCCACTCAAAGCCCAAGCCCTCTACCACAGCCACC
TCCCGCTGTGGCTTCTGTAACCGTGCAGGTGCCACCAACACCTGCACCCAGTGTTCAAAAGTTT
CCTGTGACCCCTGCCTCGGCGCCTACCACTACGACCCCTGCTGCAGAAAGAGTGAGCTGCACAA
ATTCATGCCCAACAATCAGCTGAATTACAAATCCACCCAGTTCTCCCATCCCGTGTACAGATAG
GCCCCGCCCCCCATCTTCTGCTACAAGGGCTATACACCACTGACCTGGCTTGGCAGCAGAGCTG
TGCTGGAAGGGAACAGAGACTTGAGCTTGACCATGGAAGCGCCAGGGCTAACTGCTCTGTCACA
CAGCTCACTTGGCACACCACATCCCAGCCGGCAGCTGCTGTGTGATCTGAAGGACAGGATGGCA
CTTCCAGTCACTTTGCTGACCTCTCCACTCCCTGCTCAGCCGGTTTGGGTTTGGGTTCTGGTTC
TGGTTCCCTTGAAATAAGGTCTCTGTCTCGGGACTCTTGCTACACCTGCCCCCCACTGCAAAGC
CAGCTTGGACTGGGAAGGAGCCTTTGGGGTCACTTTCAAATCCTCATCAGGAGTGGTGAGCTAG
AGGCCTGCTGGCTTGTGAAATGAGCCCTCCTGCCACACCCGGCCTCTGATGGCTCGCCTCTCTT
TCTGCTCCCTTGATACAAGGATCCCTAGGCAGATGTCCCCACCCTTTGTCTCCCTCCAACTGGT
ATTAAAGGGGAGCCAAGTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006235636 ⟹ XP_006235698

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	176,621,974 - 176,639,784 (-)	NCBI
mRatBN7.2	3	156,202,962 - 156,213,283 (-)	NCBI
Rnor_6.0	3	164,229,211 - 164,239,483 (-)	NCBI
Rnor_5.0	3	170,379,958 - 170,390,225 (-)	NCBI

Sequence:

show sequence

GCTGTCTCCGGTACTATTCTCGGTTCTTGGAGCCGGCGGGAGCGGCGGGGCCGTGAGGGCCCGT
GCTTTGGAGGCGCTCGCTTTCCTGGCGGGCAGCGGCGGAGCATGCGCTGGTCCATGGGCACCAT
GCCAGTTCTTCATGTGATGTGCCAGCCTCCAGCCCCAGAGCCATGGGGGAGATGAGGTAGCCCT
TGGGTTTGATTTGGGGAAGCCCAGTTCAATGGATACGAAGTACAAGGATGACTTATTCCGGAAG
TACGTGCAGTTCCATGAGGGCAAAGTGGACACCACCCCCGGCAAACAGTCTGGCAGCGATGAGT
ACCTGCGCGTGGCAGCTGCCACCCTGCTCAGCCTGCACAAGGTGGACCCTTTATATCGATTTCG
GCTGATCCAGTTTTATGAGGTGGTGGAGAGCTCCCTCCGCTCGCTGAGTAGCTCCAGCCTGAGC
GCTCTGCACTGCGCCTTCAGCATGCTGGAGACAATGGCCATCAACCTCTTCCTGTTCCCCTGGA
AGAAGGAGTTCCGCAGCATCAAGACCTACACGGGCCCTTTTGTTTACTATGTCAAGTCCACGTT
GCTGGAGAAGGACATCCGAGCCATTCTAAAGTTCATGGGCTACGAACCTGAGTTGGGGACTGCA
TACAAACTCAAAGAGCTTGTGGAGTCCCTCCAGGTGAAGATGGTCTCCTTTGAGCTCTTCCTGG
CCAAGGTCGAGTGTGAGCAGATGCTGGGAATACACTCACAGGTAAAGGACAAGGGCTATTCAGA
GCTGGATGTGGTGACTGAGCGCAAGAGCAGCACAGAGGATGCACGTGGGTGCTCAGATGCCCTG
CGGAGGCGGGCTGAGAGTCGAGAGCACCTGACCACTTCCATGGCTCGTGTGGCACTCCAGAAGT
CAGCCAGTGAGCGCGCAGCCAAGGACTACTACAAGCCCCGAGTGACCAAACCCTCCAGGTCGGT
GGATGCCTACGACAGCTACTGGGAAAGCAGGAAGCCCCCCTCAAAGGCCTCACTGAGTCTGCGC
AAGGAGCCCCTGGCTATGGATGTAGGGGAAGACTTGAAGGATGAGATCATCCGCCCATCCCCCT
CATTGCTGACCATGTCCAGCTCCCCCCATGGTAGCCCTGATGACCTTCCCTCCATCTCCCCCAT
CAATGGCCTGGGCCTTCTTCGTAGCACGTACTTCCCCACTCAGGATGACGTGGACCTGTACACG
GATTCCGAACCCAGGGCCACCTACCGGAGGCAAGATGCTCTGCGGTCAGATATATGGCTGGTCA
AAAATGATGCCCACTCCATCTACCACAAGCGTTCACCCCCCACCAAAGAGTCTGCCCTCTCCAA
GTGCCAAAACTGCGGCCTGTCCTGCAGCTCCTCCCTCTGTCAGCGCTGTGACAGTGTCTGTCCT
TCGGCCTCCAAGCCCAGCGGTTTTCCCAGCAAGGCCTCTGCACACGACAGCCTGGTCCATGGGG
CACCTATGCGGGAGAAATATGTGGGACAGACTCAGGGCCTTGACCGGCTGGCAACTGTCCACTC
AAAGCCCAAGCCCTCTACCACAGCCACCTCCCGCTGTGGCTTCTGTAACCGTGCAGGTGCCACC
AACACCTGCACCCAGTGTTCAAAAGTTTCCTGTGACCCCTGCCTCGGCGCCTACCACTACGACC
CCTGCTGCAGAAAGAGTGAGCTGCACAAATTCATGCCCAACAATCAGCTGAATTACAAATCCAC
CCAGTTCTCCCATCCCGTGTACAGATAGGCCCCGCCCCCCATCTTCTGCTACAAGGGCTATACA
CCACTGACCTGGCTTGGCAGCAGAGCTGTGCTGGAAGGGAACAGAGACTTGAGCTTGACCATGG
AAGCGCCAGGGCTAACTGCTCTGTCACACAGCTCACTTGGCACACCACATCCCAGCCGGCAGCT
GCTGTGTGATCTGAAGGACAGGATGGCACTTCCAGTCACTTTGCTGACCTCTCCACTCCCTGCT
CAGCCGGTTTGGGTTTGGGTTCTGGTTCTGGTTCCCTTGAAATAAGGTCTCTGTCTCGGGACTC
TTGCTACACCTGCCCCCCACTGCAAAGCCAGCTTGGACTGGGAAGGAGCCTTTGGGGTCACTTT
CAAATCCTCATCAGGAGTGGTGAGCTAGAGGCCTGCTGGCTTGTGAAATGAGCCCTCCTGCCAC
ACCCGGCCTCTGATGGCTCGCCTCTCTTTCTGCTCCCTTGATACAAGGATCCCTAGGCAGATGT
CCCCACCCTTTGTCTCCCTCCAACTGGTATTAAAGGGGAGCCAAGTCCAGTGTTAGTTGAATCC
ATCTTGCCAGCTCCACTCAGTCAGCCCACAGTGTTGGCAAGCTCTGCTTGTCAGTTGGAAAGTG
GACTCCATGGCAGGACGGCGTCCCTTCTGTTTGCATAACCCCTTTACTGTATTGTATATACAGA
ATTTGAGGTTTATTTTTAAATGAGTGTTCAACTTGCTGTGTGTTTCAACATGGTGAAAGAAATT
AATGACATGATATTTATAAAGGTGCCCCGGGCTCTTTAGTCTTCCAAGGGGGGCTGCGTGCCCT
TTCCCGGTGGGAGCTCGGGGTAGGGACTGATAAAGCCCATGTTTCTTCCCATGGTGGTAGAGAG
CTACTGTCTTCCCTACAGTAAGTATTATACACCTACCTCCAGTGTGCACATGGGGTTAGCATGG
TGCCGGGGTCTGCAAAGACCTCAGGGACAAGGTGGGGACCTCAGCCCTCACATCCATAGCTCTG
GTCTTGGTGCCTGCTGAGCATGAATCTTGTACCCTAAACCTCGAATCTCAGAAGGAAGTTCAGG
TGGTGGGGTCCTTCCCCTCATCTTGCCTTCCTCACTGATTCCCAGGGCTGTCAGCACGGCTCTC
TGTCTTTTTGCACTAGGGTGGGCAGAGGTGGTGTGTGCTCATTAGATAGATGCCTCTCCAGTCT
CAGCCAAGTATCCACGCTTTCTGGTATAAATCCCACTTCTGGATTTTCCTTTTTAGGGAGAGGG
GCAGGGCAGGGATTTGAGGCTGTCACTTCCTTGTGAAGTGCTAACACACTTTAGCCATAGGCAG
TTGTGCTGTCCAGTGTTTGGGATCTATGTATAAGTAGAGTTTTCCCAAAGGCAGGCATTCAGCT
CTGGAGCAGGCTTGACTCTGGCCAAACCCTGAGCCACTGTGAATTTGCTGGTGGTCTTCCAACT
TACAGGAGCGATTTTAAGGTTTTCCAAATCTTATATGACTCTTTTTTTAATCTCTAACTGATAG
ACCACATGTAGATAAGTGTATATACAGCTGAATTTGGGCAATTTTATTACTGAGACTGGCCTTC
CTGGGCAGCTCTTTGATGTTCCACACCTCAGAACTGGCAATGCCTGGCCCTTTCCTGAGAGCTC
TGGTTTTCCATTCCAGTTACTCCAGCAATGCAGGGACTCTCTTAAGATGGGGGACAGGTTGCCT
CAGGAAGTCCAGTGTGCTTTCCACCAGGAAATACTGTGTACAGACTGGCAAGGCCTCTTCCCTC
CGAGGTGTGTCTCACTATAGGAGAGTGCTGTGATCCAGATAGTTGAGTATATGCTAATTTAAAA
ATGCACATATTTTGCATTTGATTTCTACAGAGTTGAAATGTTGAGAGACTTTAAAAAAATAATA
ATAAAGTGTCTTCCATTGTTAAATGAAGTGTTTATGGTGTTACAGCCCCTTCTGTGGCTTCCCT
CATTTGCAGTATGCTCGGGCCTGGACACCATGGTTAGCTCAAGTGACAGGACTCAGATATGGCT
GCCTGGTCATCTGGGAAAGATGGGAGCCAGGGCCAGGAGTCAGGCTGCCCATTTCCCCAAAGTG
AACTTTGTCCTCCAGGAGAAATAACTGTTACAGACACACCTTTTCCCCTGCCTTCTGACGTTTT
CTCATTAAAGGCATGTTCTACCACA

hide sequence

RefSeq Acc Id:

XM_039104092 ⟹ XP_038960020

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	176,621,974 - 176,631,536 (-)	NCBI
mRatBN7.2	3	156,202,962 - 156,212,532 (-)	NCBI

RefSeq Acc Id:

XM_039104093 ⟹ XP_038960021

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	176,621,974 - 176,631,774 (-)	NCBI
mRatBN7.2	3	156,202,962 - 156,212,773 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_446127	(Get FASTA)	NCBI Sequence Viewer
	XP_006235698	(Get FASTA)	NCBI Sequence Viewer
	XP_038960020	(Get FASTA)	NCBI Sequence Viewer
	XP_038960021	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH81752	(Get FASTA)	NCBI Sequence Viewer
	AAK61814	(Get FASTA)	NCBI Sequence Viewer
	EDL96405	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000012604
	ENSRNOP00000012604.4
	ENSRNOP00000088233.1
	ENSRNOP00065025500
GenBank Protein	Q66HP6	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_446127 ⟸ NM_053675

- UniProtKB:

F1LNA7 (UniProtKB/Swiss-Prot), Q91XS7 (UniProtKB/Swiss-Prot), Q66HP6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDTKYKDDLFRKYVQFHEGKVDTTPGKQSGSDEYLRVAAATLLSLHKVDPLYRFRLIQFYEVVE
SSLRSLSSSSLSALHCAFSMLETMAINLFLFPWKKEFRSIKTYTGPFVYYVKSTLLEKDIRAIL
KFMGYEPELGTAYKLKELVESLQVKMVSFELFLAKVECEQMLGIHSQVKDKGYSELDVVTERKS
STEDARGCSDALRRRAESREHLTTSMARVALQKSASERAAKDYYKPRVTKPSRSVDAYDSYWES
RKPPSKASLSLRKEPLAMDVGEDLKDEIIRPSPSLLTMSSSPHGSPDDLPSISPINGLGLLRST
YFPTQDDVDLYTDSEPRATYRRQDALRSDIWLVKNDAHSIYHKRSPPTKESALSKCQNCGLSCS
SSLCQRCDSVCPSASKPSGFPSKASAHDSLVHGAPMREKYVGQTQGLDRLATVHSKPKPSTTAT
SRCGFCNRAGATNTCTQCSKVSCDPCLGAYHYDPCCRKSELHKFMPNNQLNYKSTQFSHPVYR

hide sequence

RefSeq Acc Id:	XP_006235698 ⟸ XM_006235636
- Peptide Label:	isoform X1
- UniProtKB:	F1LNA7 (UniProtKB/Swiss-Prot), Q91XS7 (UniProtKB/Swiss-Prot), Q66HP6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDTKYKDDLFRKYVQFHEGKVDTTPGKQSGSDEYLRVAAATLLSLHKVDPLYRFRLIQFYEVVE SSLRSLSSSSLSALHCAFSMLETMAINLFLFPWKKEFRSIKTYTGPFVYYVKSTLLEKDIRAIL KFMGYEPELGTAYKLKELVESLQVKMVSFELFLAKVECEQMLGIHSQVKDKGYSELDVVTERKS STEDARGCSDALRRRAESREHLTTSMARVALQKSASERAAKDYYKPRVTKPSRSVDAYDSYWES RKPPSKASLSLRKEPLAMDVGEDLKDEIIRPSPSLLTMSSSPHGSPDDLPSISPINGLGLLRST YFPTQDDVDLYTDSEPRATYRRQDALRSDIWLVKNDAHSIYHKRSPPTKESALSKCQNCGLSCS SSLCQRCDSVCPSASKPSGFPSKASAHDSLVHGAPMREKYVGQTQGLDRLATVHSKPKPSTTAT SRCGFCNRAGATNTCTQCSKVSCDPCLGAYHYDPCCRKSELHKFMPNNQLNYKSTQFSHPVYR hide sequence

RefSeq Acc Id:

ENSRNOP00000012604 ⟸ ENSRNOT00000012604

RefSeq Acc Id:	XP_038960021 ⟸ XM_039104093
- Peptide Label:	isoform X1
- UniProtKB:	Q66HP6 (UniProtKB/Swiss-Prot), F1LNA7 (UniProtKB/Swiss-Prot), Q91XS7 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038960020 ⟸ XM_039104092
- Peptide Label:	isoform X1
- UniProtKB:	Q66HP6 (UniProtKB/Swiss-Prot), F1LNA7 (UniProtKB/Swiss-Prot), Q91XS7 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:

ENSRNOP00000088233 ⟸ ENSRNOT00000118290

Protein Domains

PUB Spermatogenesis-associated protein 2 PUB-like

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q66HP6-F1-model_v2	AlphaFold	Q66HP6	1-511	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620754	AgrOrtholog
BioCyc Gene	G2FUF-46733	BioCyc
Ensembl Genes	ENSRNOG00000009207	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00065018999	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000012604.5	UniProtKB/Swiss-Prot
	ENSRNOT00000118290.1	UniProtKB/TrEMBL
	ENSRNOT00065031946	UniProtKB/Swiss-Prot
Gene3D-CATH	1.20.58.2190	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7134513	IMAGE-MGC_LOAD
InterPro	SPATA2_PUB-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:114210	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:93291	IMAGE-MGC_LOAD
NCBI Gene	114210	ENTREZGENE
PANTHER	PTHR15326:SF8	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SPERMATOGENESIS-ASSOCIATED PROTEIN 2/TAMOZHENNIC	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	SPATA2_PUB-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Spata2	PhenoGen
RatGTEx	ENSRNOG00000009207	RatGTEx
	ENSRNOG00065018999	RatGTEx
UniProt	A0A8I6A7F5_RAT	UniProtKB/TrEMBL
	F1LNA7	ENTREZGENE
	Q66HP6	ENTREZGENE
	Q91XS7	ENTREZGENE
	SPAT2_RAT	UniProtKB/Swiss-Prot
UniProt Secondary	F1LNA7	UniProtKB/Swiss-Prot
	Q91XS7	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-02-26	Spata2	spermatogenesis associated 2			Symbol and Name status set to approved	625702	APPROVED
2002-08-07	Spata2	spermatogenesis associated 2			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar