Strbp (spermatid perinuclear RNA binding protein)

Gene: Strbp (spermatid perinuclear RNA binding protein) Rattus norvegicus

Analyze

Symbol:

Strbp

Name:

spermatid perinuclear RNA binding protein

RGD ID:

620673

Description:

Predicted to enable double-stranded RNA binding activity; microtubule binding activity; and single-stranded RNA binding activity. Predicted to be involved in cell differentiation and spermatogenesis. Predicted to act upstream of or within cell motility; mechanosensory behavior; and spermatid development. Predicted to be located in manchette and nucleus. Orthologous to human STRBP (spermatid perinuclear RNA binding protein); INTERACTS WITH 2,4-dinitrotoluene; 2,5-hexanedione; ammonium chloride.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

74 kDa double-stranded RNA-binding protein; double-stranded RNA-binding protein p74; p74; spermatid perinuclear RNA-binding protein; Spnr

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	41,738,096 - 41,879,054 (-)	NCBI		GRCr8
mRatBN7.2	3	21,328,310 - 21,467,753 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	21,337,855 - 21,414,949 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	24,809,843 - 24,883,207 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	33,394,801 - 33,468,169 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	31,205,741 - 31,279,169 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	21,817,680 - 21,956,988 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	21,828,298 - 21,904,270 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	27,058,852 - 27,186,405 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	17,338,337 - 17,411,975 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	17,235,208 - 17,308,204 (-)	NCBI
Celera	3	19,776,985 - 19,850,280 (-)	NCBI		Celera
Cytogenetic Map	3	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Animal Disease Models (ISO)

genetic disease (ISO)

lung adenocarcinoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-dinitrotoluene (EXP)

2,5-hexanedione (EXP)

4,4'-diaminodiphenylmethane (ISO)

4-hydroxyphenyl retinamide (ISO)

aldehydo-D-glucose (ISO)

ammonium chloride (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

arsenous acid (ISO)

atrazine (EXP,ISO)

benzene (ISO)

benzo[e]pyrene (ISO)

Benzo[ghi]perylene (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carbon nanotube (ISO)

casticin (ISO)

cerium trichloride (ISO)

CGP 52608 (ISO)

chlorpromazine (EXP)

cidofovir anhydrous (ISO)

clofibrate (ISO)

cobalt dichloride (ISO)

cordycepin (ISO)

cyclosporin A (EXP,ISO)

D-glucose (ISO)

deoxynivalenol (ISO)

diarsenic trioxide (ISO)

diazinon (ISO)

dicrotophos (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

fenofibrate (ISO)

fenthion (ISO)

finasteride (EXP)

fipronil (EXP)

folic acid (ISO)

folpet (ISO)

glucose (ISO)

ibuprofen (ISO)

ivermectin (ISO)

maneb (ISO)

metformin (EXP)

methapyrilene (ISO)

methidathion (ISO)

methoxychlor (EXP)

methylmercury chloride (ISO)

N-methyl-4-phenylpyridinium (EXP)

ozone (ISO)

paracetamol (ISO)

paraquat (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

progesterone (ISO)

pyridaben (ISO)

quercetin (ISO)

resveratrol (ISO)

SB 431542 (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

sulindac (EXP)

tetrachloroethene (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP,ISO)

trichloroethene (ISO)

trovafloxacin (ISO)

valproic acid (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell differentiation (IEA)

cell motility (IEA,ISO)

mechanosensory behavior (IEA,ISO)

spermatid development (IEA,ISO)

spermatogenesis (IEA)

Cellular Component

cytoplasm (IEA)

manchette (IEA,ISO)

microtubule cytoskeleton (ISO)

nucleus (ISO)

precatalytic spliceosome (IEA)

Molecular Function

DNA binding (IEA,ISO)

double-stranded RNA binding (IBA,IEA,ISO)

microtubule binding (IEA,ISO)

protein binding (ISO)

single-stranded RNA binding (IBA,IEA,ISO)

tubulin binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	A new double-stranded RNA-binding protein that interacts with PKR.	Coolidge CJ and Patton JG, Nucleic Acids Res 2000 Mar 15;28(6):1407-17.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:7744952	PMID:8889548	PMID:9674995	PMID:11336498	PMID:12477932	PMID:22658674	PMID:22681889

Genomics

Comparative Map Data

Strbp
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	41,738,096 - 41,879,054 (-)	NCBI		GRCr8
mRatBN7.2	3	21,328,310 - 21,467,753 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	21,337,855 - 21,414,949 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	24,809,843 - 24,883,207 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	33,394,801 - 33,468,169 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	31,205,741 - 31,279,169 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	21,817,680 - 21,956,988 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	21,828,298 - 21,904,270 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	27,058,852 - 27,186,405 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	17,338,337 - 17,411,975 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	17,235,208 - 17,308,204 (-)	NCBI
Celera	3	19,776,985 - 19,850,280 (-)	NCBI		Celera
Cytogenetic Map	3	q11	NCBI

STRBP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	123,109,494 - 123,268,586 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	123,109,500 - 123,268,586 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	125,883,548 - 126,030,865 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	124,927,139 - 125,070,664 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	122,966,873 - 123,110,397	NCBI
Celera	9	96,532,171 - 96,615,626 (-)	NCBI		Celera
Cytogenetic Map	9	q33.3	NCBI
HuRef	9	95,498,948 - 95,645,951 (-)	NCBI		HuRef
CHM1_1	9	126,032,225 - 126,179,120 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	135,300,815 - 135,465,770 (-)	NCBI		T2T-CHM13v2.0

Strbp
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	37,459,880 - 37,593,890 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	37,373,240 - 37,593,871 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	37,569,868 - 37,703,878 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	37,483,228 - 37,703,859 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	37,425,388 - 37,502,805 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	37,305,237 - 37,469,228 (-)	NCBI		MGSCv36	mm8
Celera	2	37,255,231 - 37,332,594 (-)	NCBI		Celera
Cytogenetic Map	2	B	NCBI
cM Map	2	24.19	NCBI

Strbp
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955419	4,795,953 - 4,852,398 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955419	4,732,467 - 4,858,872 (+)	NCBI	ChiLan1.0	ChiLan1.0

STRBP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	16,081,061 - 16,239,600 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	16,083,338 - 16,235,943 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	94,249,017 - 94,395,796 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	122,581,566 - 122,645,198 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	122,586,575 - 122,640,167 (-)	Ensembl	panpan1.1		panPan2

STRBP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	59,543,172 - 59,689,035 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	59,614,129 - 59,689,032 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	58,737,579 - 58,884,344 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	60,462,224 - 60,609,435 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	60,461,624 - 60,609,432 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	59,220,684 - 59,367,486 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	59,536,175 - 59,682,512 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	59,628,568 - 59,775,402 (+)	NCBI		UU_Cfam_GSD_1.0

Strbp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	191,823,427 - 191,927,414 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	11,592,008 - 11,647,098 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936487	11,579,002 - 11,647,078 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

STRBP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	264,045,669 - 264,195,883 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	264,030,135 - 264,195,908 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	297,496,762 - 297,560,978 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

STRBP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	14,944,447 - 15,023,703 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	14,948,763 - 15,011,359 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666079	1,045,539 - 1,201,312 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Strbp
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624760	11,671,904 - 11,815,063 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Strbp
519 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	427
Count of miRNA genes:	236
Interacting mature miRNAs:	267
Transcripts:	ENSRNOT00000066377
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70202	Alc19	Alcohol consumption QTL 19	2.5		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	3	1	27494778	Rat
631679	Cm10	Cardiac mass QTL 10	7.34	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	1	31158234	Rat
631831	Alc8	Alcohol consumption QTL 8	2.7		consumption behavior trait (VT:0002069)	calculated ethanol drink intake rate (CMO:0001615)	3	1	33230976	Rat
61468	Bp15	Blood pressure QTL 15	4.4		blood pressure trait (VT:0000183)	diastolic blood pressure (CMO:0000005)	3	1	33278763	Rat
61468	Bp15	Blood pressure QTL 15	4.4		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	3	1	33278763	Rat
61468	Bp15	Blood pressure QTL 15	4.4		blood pressure trait (VT:0000183)	pulse pressure (CMO:0000292)	3	1	33278763	Rat
631545	Bp85	Blood pressure QTL 85	3.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	33278763	Rat
4889966	Bss95	Bone structure and strength QTL 95	4.4		tibia area (VT:1000281)	tibia-fibula cross-sectional area (CMO:0001718)	3	1	36847613	Rat
2312664	Scl62	Serum cholesterol level QTL 62		0.05	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	1	38710544	Rat
631568	Bp92	Blood pressure QTL 92	2.2	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	39874793	Rat
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	1	91609953	Rat
1298526	Arunc3	Aerobic running capacity QTL 3	2.2		exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	3	8227194	33703538	Rat
10401810	Kidm53	Kidney mass QTL 53			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	8227194	47233430	Rat
70203	Gcr2	Gastric cancer resistance QTL 2	2.6		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	3	8658162	27494778	Rat
1358357	Srcrtb1	Stress Responsive Cort Basal QTL 1	6.36	0.002	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	8658162	27494778	Rat
6893355	Bw101	Body weight QTL 101	0.4	0.38	body mass (VT:0001259)	body weight (CMO:0000012)	3	10778704	30357018	Rat
6893363	Bw105	Body weight QTL 105	2.6	0.0036	body mass (VT:0001259)	body weight (CMO:0000012)	3	10778704	30357018	Rat
1558654	Bw56	Body weight QTL 56	4.5	0.0000171	body mass (VT:0001259)	body weight (CMO:0000012)	3	10778704	30357018	Rat
70191	BpQTLcluster4	Blood pressure QTL cluster 4	3		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	3	10778704	50302886	Rat
70191	BpQTLcluster4	Blood pressure QTL cluster 4	3		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	3	10778704	50302886	Rat
1558647	Cm46	Cardiac mass QTL 46	5.4	0.0000055	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	10778823	30356773	Rat
1558650	Cm48	Cardiac mass QTL 48	4	0.0001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	3	10778823	30356773	Rat
1558657	Cm43	Cardiac mass QTL 43	6.6	0.0000000293	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	10778823	30356773	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	0.000014	heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	10861912	89878372	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
2298542	Neuinf11	Neuroinflammation QTL 11	3.9		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	3	15005422	76927699	Rat
631676	Cm8	Cardiac mass QTL 8	7.03	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	3	16954708	61954708	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	17374703	35528639	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	17374703	35528639	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	3	17374703	35528639	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	3	17374703	35528639	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	heart rate (CMO:0000002)	3	17374703	35528639	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	heart rate (CMO:0000002)	3	17374703	35528639	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	body weight (CMO:0000012)	3	17374703	35528639	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	body weight (CMO:0000012)	3	17374703	35528639	Rat
2325840	Bp345	Blood pressure QTL 345		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	18311454	28441896	Rat
731172	Bp151	Blood pressure QTL 151		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	18311454	47233430	Rat
12879849	Bw180	Body weight QTL 180		0.037	body mass (VT:0001259)	body weight (CMO:0000012)	3	18311454	47233430	Rat
12879850	Cm91	Cardiac mass QTL 91		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	18311454	47233430	Rat
12879851	Cm92	Cardiac mass QTL 92		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	18311454	47233430	Rat
12879852	Cm93	Cardiac mass QTL 93		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	18311454	47233430	Rat
12879853	Am5	Aortic mass QTL 5		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	18311454	47233430	Rat
12879854	Kidm63	Kidney mass QTL 63		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	18311454	47233430	Rat
10450804	Scl70	Serum cholesterol level QTL 70	4.7	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	20714090	65714090	Rat
10450794	Scl69	Serum cholesterol level QTL 69	6.3	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	20714090	65714090	Rat

Markers in Region

D3Rat191

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	21,343,841 - 21,344,079 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	21,833,212 - 21,833,449	NCBI	Rnor6.0
Rnor_5.0	3	27,071,774 - 27,072,011	UniSTS	Rnor5.0
RGSC_v3.4	3	17,340,727 - 17,340,965	RGD	RGSC3.4
RGSC_v3.4	3	17,340,727 - 17,340,965	UniSTS	RGSC3.4
RGSC_v3.1	3	17,237,099 - 17,237,337	RGD
RH 3.4 Map	3	189.7	UniSTS
RH 3.4 Map	3	189.7	RGD
RH 2.0 Map	3	155.1	RGD
SHRSP x BN Map	3	7.5699	RGD
Cytogenetic Map	3	q11	UniSTS

RH127865

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	21,341,679 - 21,341,889 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	21,831,050 - 21,831,259	NCBI	Rnor6.0
Rnor_5.0	3	27,069,612 - 27,069,821	UniSTS	Rnor5.0
RGSC_v3.4	3	17,338,565 - 17,338,774	UniSTS	RGSC3.4
Celera	3	19,777,213 - 19,777,422	UniSTS
RH 3.4 Map	3	206.3	UniSTS
Cytogenetic Map	3	q11	UniSTS

C86322

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	21,341,576 - 21,341,698 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	21,830,947 - 21,831,068	NCBI	Rnor6.0
Rnor_5.0	3	27,069,509 - 27,069,630	UniSTS	Rnor5.0
RGSC_v3.4	3	17,338,462 - 17,338,583	UniSTS	RGSC3.4
Celera	3	19,777,110 - 19,777,231	UniSTS
Cytogenetic Map	3	q11	UniSTS

BE117919

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	21,347,482 - 21,347,637 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	21,836,840 - 21,836,994	NCBI	Rnor6.0
Rnor_5.0	3	27,074,623 - 27,074,777	UniSTS	Rnor5.0
RGSC_v3.4	3	17,344,106 - 17,344,260	UniSTS	RGSC3.4
Celera	3	19,782,989 - 19,783,143	UniSTS
RH 3.4 Map	3	204.1	UniSTS
Cytogenetic Map	3	q11	UniSTS

AA944689

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	21,422,873 - 21,423,035 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	21,912,377 - 21,912,538	NCBI	Rnor6.0
Rnor_5.0	3	27,149,995 - 27,150,156	UniSTS	Rnor5.0
RGSC_v3.4	3	17,419,897 - 17,420,058	UniSTS	RGSC3.4
Celera	3	19,858,195 - 19,858,356	UniSTS
RH 3.4 Map	3	211.7	UniSTS
Cytogenetic Map	3	q11	UniSTS

C86322

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	21,341,486 - 21,341,726 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	21,830,857 - 21,831,096	NCBI	Rnor6.0
Rnor_5.0	3	27,069,419 - 27,069,658	UniSTS	Rnor5.0
RGSC_v3.4	3	17,338,372 - 17,338,611	UniSTS	RGSC3.4
Celera	3	19,777,020 - 19,777,259	UniSTS
Cytogenetic Map	3	q11	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	24	57	41	19	41	8	10	74	35	41	11	8
Low		19						1
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_053416	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234108	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008761777	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105987	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284711	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284712	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284713	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284714	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284715	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284716	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284717	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284718	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284719	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284720	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284721	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284722	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284723	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284724	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284725	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284726	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284727	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284728	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010064704	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010064705	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_591457	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC078774	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BU759091	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CA512540	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK839498	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CO564209	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DY320620	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DY547419	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232581	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000066377 ⟹ ENSRNOP00000062543

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	21,341,452 - 21,414,949 (-)	Ensembl
Rnor_6.0 Ensembl	3	21,830,822 - 21,904,270 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000087611 ⟹ ENSRNOP00000072689

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	21,348,580 - 21,414,949 (-)	Ensembl
Rnor_6.0 Ensembl	3	21,828,298 - 21,904,267 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000090576 ⟹ ENSRNOP00000069392

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	21,337,855 - 21,414,949 (-)	Ensembl
Rnor_6.0 Ensembl	3	21,831,264 - 21,904,133 (-)	Ensembl

RefSeq Acc Id:

NM_053416 ⟹ NP_445868

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,751,234 - 41,824,707 (-)	NCBI
mRatBN7.2	3	21,341,452 - 21,414,949 (-)	NCBI
Rnor_6.0	3	21,830,822 - 21,904,270 (-)	NCBI
Rnor_5.0	3	27,058,852 - 27,186,405 (-)	NCBI
RGSC_v3.4	3	17,338,337 - 17,411,975 (-)	RGD
Celera	3	19,776,985 - 19,850,280 (-)	RGD

Sequence:

show sequence

GGTGCTTTCCAGAGAGCAATTTTCAAACATCTTTGCTTATATTTGACATTGAGCAGTCAGGGGA
TTCAGGCATATGAGGAGGTACTGTTACCCAAAACAGTGTCTAGTGAAGACGACAAGAAAGAGAG
AAAAGGATCGTAAAAAGAAGCTAAAATACCATAGGAAACCATGAGATCTATTAGATCTTTTGCC
AATGATGATCGCCATGTTATGGTGAAACATTCAACAATCTATCCTTCTCCAGAGGAACTTGAAG
CTGTGCAAAATATGGTGTCTACTGTTGAATGTGCTCTTAAACATGTCTCAGATTGGCTGGACGA
AACAAACAAAGGCACAAAACCTGAGGGGGAGACAGAAGTAAAGAAAGATGACGCTGTGGAAAAC
TATTCCAAGGATCAAGGTGGCCGGACATTGTGTGGTGTAATGAGGATTGGCTTGGTTGCAAAAG
GCTTGCTGATTAAAGATGACATGGACCTGGAGCTGGTCTTAATGTGTAAAGACAAACCCACAGA
AACTCTGCTAAATACAGTGAAAGATAACCTTCCTATTCAAATTCAGAAACTAACAGAAGAGAAA
TACCAAGTGGAACAATGTATAAATGAAGCGTCCATTATAATTCGGAACACGAAAGAGCCAACAC
TGACTTTGAAGGTGATACTTACTTCCCCTCTAATTAGGGACGAATTGGAGAAGAAGGATGGAGA
AAATGTTATGATGAAAGACCCTCCGGACTTATTGGACAGGCAGAAATGCCTGAATGCCTTGGCT
TCTCTTCGACATGCCAAATGGTTTCAGGCAAGGGCAAATGGATTAAAATCATGTGTAATTGTCC
TCCGCATTCTGCGTGATTTGTGCAACAGAGTACCCACATGGGCACCATTGAAAGGATGGCCACT
AGAGCTTATATGTGAAAAGTCTATAGGTACTTGTAATAGACCTTTGGGCGCTGGGGAGGCCTTG
AGACGAGTAATGGAGTGTTTGGCATCTGGAATACTACTTCCTGGTGGTCCTGGTCTTCATGATC
CTTGTGAGCGAGACCCAACCGATGCTCTAAGCTACATGACCACTCAGCAAAAAGAAGATATCAC
CCATAGTGCACAGCATGCACTTAGACTATCAGCCTTTGGCCAGATTTATAAAGTACTGGAGATG
GACCCTCTTCCATCTAGTAAGCCTTTTCAGAAGTATTCCTGGTCAGTTACTGATAAAGAAGGTG
CCGGGTCTTCAGCTCTAAAGAGGCCATTTGAAGATGGATTAGGGGATGATAAAGATCCCAACAA
GAAGATGAAACGAAACTTAAGGAAAATTCTGGATAGTAAAGCAATAGACCTTATGAATGCACTA
ATGAGATTAAATCAGATCAGGCCTGGGCTTCAGTATAAGCTTTTGTCGCAGTCTGGCCCGGTCC
ATGCCCCAGTCTTCACAATGTCGGTAGATGTGGACGGCACAACATACGAAGCCTCAGGACCATC
CAAGAAAACAGCAAAGCTTCATGTGGCAGTGAAGGTTTTACAGGCAATGGGATACCCAACAGGT
TTTGATGCAGATATTGAATGTATGAGTTCCGATGAAAAATCAGATAATGAAAGCAAAAATGATA
CAGTATCTTCAAACTCAAGCAATAATACTGGAAATTGTACAACTGAGACCTCCAGTACCTTAGA
GGTAAGAACTCAGGGTCCTATCCTCACAGCAAGTGGCAAAAATCCTGTGATGGAGCTCAATGAA
AAAAGAAGAGGTCTCAAGTATGAACTCATCTCAGAAACTGGTGGAAGCCATGACAAGCGCTTTG
TAATGGAGGTAGAAGTAGATGGACAGAAATTCAGAGGTGCAGGTCCAAACAAGAAAGTGGCCAA
GGCAAGTGCAGCGCTAGCTGCCCTGGAAAAGCTGTTTTCTGGACCCAATGCAGCAAATAATAAG
AAAAAGAAGATCATTCCTCAGGCAAAGGGTGTTGTGAATACGGCAGTATCTGCAGCAGTCCAGG
CAGTTCGAGGCAGAGGAAGAGGAACTCTGACAAGGGGAGCGTTCGTGGGAGCTACAGCAGCTCC
TGGATATATAGCTCCAGGTTATGGAACTCCATATGGTTACAGCACAGCTGCCCCTGCATATGGT
TTGCCCAAGAGAATGGTTCTGTTACCCGTTATGAAATTCCCAACATATCCTGTTCCCCACTACT
CATTCTTTTAGCAAATGACAGAAGCTCATTCCTATTGAACAACAATACAGTACAATGCAGAATG
TTAGAGAAAAAAGCCTTTTTATCCTGCTTTCTTTGAACACATACTTACTTGATCAAAATTATTT
GTAAAGAACATCTTTCCTACTTTTTGATTTTAACAAATGCAAATCCAGTTCTCTAAAACTTGAA
AACAAACAAAAGAAACCAGTTCTGTGAAACGGTACCTCATTCCTGGAAATAATTTATACCAGCC
CCTTCGTTGTAGGGAAGTCTAGCAGCTCAAAGTTGACGTTTTAAGAGAGTATCAGATTATGTAA
AGTTAAATTTGTGAAGGATGTATAGAGTCTCAACACTGATCACAATAAACTGCTTTGTTGTAAC
ACAGAGTACTGCCTGGTTCCTGATGCAGTCACTGATTGGTATCTGAGTGATATGTGCTTGCTCC
AGGGCACTGGAATTTGGGCTGTAGTTATTTTTTTTTTTTAAATAAAGTAGAAACTTTTCATTTA
AACCTTTACTTTGTAAATAACGAAGTGTGTAATTAAAGCCAATAAAATATGGGTTTGAATATTG
TTTTAGCTTATTATTTTTGATTTGTTTTGTTATCAAATTTCAAGGAATTGAAAACTAGTAATAA
CTTGGCCCTAGAAACCCATTTATTTGTAAGCAAGCCGCTAAAACAAAGCAAAGATGATTTCTCA
ATCTATTCATTTTGTAAGCTCTATGTACTCCAGTTGTACAAGGGCATCCCCTGATAAGGTTACA
TTCTGTTATCCCAGCATTGCTTATTAAAATGATGGCACCATCCAAAGATGGGGAAGGAGGATTG
TGATTATCTTAGTTTACGAATTTCCAAGTTTAAAAAAAAATAAATTAATCAATCACC

hide sequence

RefSeq Acc Id:

XM_008761777 ⟹ XP_008759999

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,751,234 - 41,877,460 (-)	NCBI
mRatBN7.2	3	21,341,452 - 21,467,752 (-)	NCBI
Rnor_6.0	3	21,830,822 - 21,956,988 (-)	NCBI

Sequence:

show sequence

AGCGGGGAGCGGACGCGGGCGGAGCGCGGCGGCGCGGGTGCTTTCCAGAGAGCAATTTTCAAAC
ATCTTTGCTTATATTTGACATTGAGCAGTCAGGGGATTCAGGCATATGAGGAGGTACTGTTACC
CAAAACAGTGTCTAGTGAAGACGACAAGAAAGAGAGAAAAGGATCGTAAAAAGAAGCTAAAATA
CCATAGGAAACCATGAGATCTATTAGATCTTTTGCCAATGATGATCGCCATGTTATGGTGAAAC
ATTCAACAATCTATCCTTCTCCAGAGGAACTTGAAGCTGTGCAAAATATGGTGTCTACTGTTGA
ATGTGCTCTTAAACATGTCTCAGATTGGCTGGACGAAACAAACAAAGGCACAAAACCTGAGGGG
GAGACAGAAGTAAAGAAAGATGACGCTGTGGAAAACTATTCCAAGGATCAAGGTGGCCGGACAT
TGTGTGGTGTAATGAGGATTGGCTTGGTTGCAAAAGGCTTGCTGATTAAAGATGACATGGACCT
GGAGCTGGTCTTAATGTGTAAAGACAAACCCACAGAAACTCTGCTAAATACAGTGAAAGATAAC
CTTCCTATTCAAATTCAGAAACTAACAGAAGAGAAATACCAAGTGGAACAATGTATAAATGAAG
CGTCCATTATAATTCGGAACACGAAAGAGCCAACACTGACTTTGAAGGTGATACTTACTTCCCC
TCTAATTAGGGACGAATTGGAGAAGAAGGATGGAGAAAATGTTATGATGAAAGACCCTCCGGAC
TTATTGGACAGGCAGAAATGCCTGAATGCCTTGGCTTCTCTTCGACATGCCAAATGGTTTCAGG
CAAGGGCAAATGGATTAAAATCATGTGTAATTGTCCTCCGCATTCTGCGTGATTTGTGCAACAG
AGTACCCACATGGGCACCATTGAAAGGATGGCCACTAGAGCTTATATGTGAAAAGTCTATAGGT
ACTTGTAATAGACCTTTGGGCGCTGGGGAGGCCTTGAGACGAGTAATGGAGTGTTTGGCATCTG
GAATACTACTTCCTGGTGGTCCTGGTCTTCATGATCCTTGTGAGCGAGACCCAACCGATGCTCT
AAGCTACATGACCACTCAGCAAAAAGAAGATATCACCCATAGTGCACAGCATGCACTTAGACTA
TCAGCCTTTGGCCAGATTTATAAAGTACTGGAGATGGACCCTCTTCCATCTAGTAAGCCTTTTC
AGAAGTATTCCTGGTCAGTTACTGATAAAGAAGGTGCCGGGTCTTCAGCTCTAAAGAGGCCATT
TGAAGATGGATTAGGGGATGATAAAGATCCCAACAAGAAGATGAAACGAAACTTAAGGAAAATT
CTGGATAGTAAAGCAATAGACCTTATGAATGCACTAATGAGATTAAATCAGATCAGGCCTGGGC
TTCAGTATAAGCTTTTGTCGCAGTCTGGCCCGGTCCATGCCCCAGTCTTCACAATGTCGGTAGA
TGTGGACGGCACAACATACGAAGCCTCAGGACCATCCAAGAAAACAGCAAAGCTTCATGTGGCA
GTGAAGGTTTTACAGGCAATGGGATACCCAACAGGTTTTGATGCAGATATTGAATGTATGAGTT
CCGATGAAAAATCAGATAATGAAAGCAAAAATGATACAGTATCTTCAAACTCAAGCAATAATAC
TGGAAATTGTACAACTGAGACCTCCAGTACCTTAGAGGTAAGAACTCAGGGTCCTATCCTCACA
GCAAGTGGCAAAAATCCTGTGATGGAGCTCAATGAAAAAAGAAGAGGTCTCAAGTATGAACTCA
TCTCAGAAACTGGTGGAAGCCATGACAAGCGCTTTGTAATGGAGGTAGAAGTAGATGGACAGAA
ATTCAGAGGTGCAGGTCCAAACAAGAAAGTGGCCAAGGCAAGTGCAGCGCTAGCTGCCCTGGAA
AAGCTGTTTTCTGGACCCAATGCAGCAAATAATAAGAAAAAGAAGATCATTCCTCAGGCAAAGG
GTGTTGTGAATACGGCAGTATCTGCAGCAGTCCAGGCAGTTCGAGGCAGAGGAAGAGGAACTCT
GACAAGGGGAGCGTTCGTGGGAGCTACAGCAGCTCCTGGATATATAGCTCCAGGTTATGGAACT
CCATATGGTTACAGCACAGCTGCCCCTGCATATGGTTTGCCCAAGAGAATGGTTCTGTTACCCG
TTATGAAATTCCCAACATATCCTGTTCCCCACTACTCATTCTTTTAGCAAATGACAGAAGCTCA
TTCCTATTGAACAACAATACAGTACAATGCAGAATGTTAGAGAAAAAAGCCTTTTTATCCTGCT
TTCTTTGAACACATACTTACTTGATCAAAATTATTTGTAAAGAACATCTTTCCTACTTTTTGAT
TTTAACAAATGCAAATCCAGTTCTCTAAAACTTGAAAACAAACAAAAGAAACCAGTTCTGTGAA
ACGGTACCTCATTCCTGGAAATAATTTATACCAGCCCCTTCGTTGTAGGGAAGTCTAGCAGCTC
AAAGTTGACGTTTTAAGAGAGTATCAGATTATGTAAAGTTAAATTTGTGAAGGATGTATAGAGT
CTCAACACTGATCACAATAAACTGCTTTGTTGTAACACAGAGTACTGCCTGGTTCCTGATGCAG
TCACTGATTGGTATCTGAGTGATATGTGCTTGCTCCAGGGCACTGGAATTTGGGCTGTAGTTAT
TTTTTTTTTTTAAATAAAGTAGAAACTTTTCATTTAAACCTTTACTTTGTAAATAACGAAGTGT
GTAATTAAAGCCAATAAAATATGGGTTTGAATATTGTTTTAGCTTATTATTTTTGATTTGTTTT
GTTATCAAATTTCAAGGAATTGAAAACTAGTAATAACTTGGCCCTAGAAACCCATTTATTTGTA
AGCAAGCCGCTAAAACAAAGCAAAGATGATTTCTCAATCTATTCATTTTGTAAGCTCTATGTAC
TCCAGTTGTACAAGGGCATCCCCTGATAAGGTTACATTCTGTTATCCCAGCATTGCTTATTAAA
ATGATGGCACCATCCAAAGATGGGGAAGGAGGATTGTGATTATCTTAGTTTACGAATTTCCAAG
TTTAAAAAAAAATAAATTAATCAATCACC

hide sequence

RefSeq Acc Id:

XM_039105982 ⟹ XP_038961910

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,748,927 - 41,877,460 (-)	NCBI
mRatBN7.2	3	21,339,143 - 21,467,753 (-)	NCBI

RefSeq Acc Id:

XM_039105984 ⟹ XP_038961912

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,748,927 - 41,876,615 (-)	NCBI
mRatBN7.2	3	21,339,143 - 21,459,390 (-)	NCBI

RefSeq Acc Id:

XM_039105985 ⟹ XP_038961913

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,748,927 - 41,831,549 (-)	NCBI
mRatBN7.2	3	21,339,143 - 21,421,773 (-)	NCBI

RefSeq Acc Id:

XM_039105986 ⟹ XP_038961914

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,748,922 - 41,808,843 (-)	NCBI
mRatBN7.2	3	21,339,138 - 21,404,889 (-)	NCBI

RefSeq Acc Id:

XM_039105987 ⟹ XP_038961915

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,748,921 - 41,799,023 (-)	NCBI
mRatBN7.2	3	21,339,138 - 21,389,259 (-)	NCBI

RefSeq Acc Id:

XM_063284711 ⟹ XP_063140781

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,748,925 - 41,877,460 (-)	NCBI

RefSeq Acc Id:

XM_063284712 ⟹ XP_063140782

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,748,925 - 41,878,396 (-)	NCBI

RefSeq Acc Id:

XM_063284713 ⟹ XP_063140783

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,748,925 - 41,876,638 (-)	NCBI

RefSeq Acc Id:

XM_063284714 ⟹ XP_063140784

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,748,925 - 41,878,396 (-)	NCBI

RefSeq Acc Id:

XM_063284715 ⟹ XP_063140785

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,748,925 - 41,877,460 (-)	NCBI

RefSeq Acc Id:

XM_063284716 ⟹ XP_063140786

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,748,925 - 41,831,549 (-)	NCBI

RefSeq Acc Id:

XM_063284717 ⟹ XP_063140787

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,748,925 - 41,879,026 (-)	NCBI

RefSeq Acc Id:

XM_063284718 ⟹ XP_063140788

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,751,234 - 41,877,460 (-)	NCBI

RefSeq Acc Id:

XM_063284719 ⟹ XP_063140789

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,738,096 - 41,877,460 (-)	NCBI

RefSeq Acc Id:

XM_063284720 ⟹ XP_063140790

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,748,927 - 41,878,396 (-)	NCBI

RefSeq Acc Id:

XM_063284721 ⟹ XP_063140791

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,748,927 - 41,879,026 (-)	NCBI

RefSeq Acc Id:

XM_063284722 ⟹ XP_063140792

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,748,927 - 41,878,396 (-)	NCBI

RefSeq Acc Id:

XM_063284723 ⟹ XP_063140793

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,751,234 - 41,876,542 (-)	NCBI

RefSeq Acc Id:

XM_063284724 ⟹ XP_063140794

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,751,234 - 41,877,460 (-)	NCBI

RefSeq Acc Id:

XM_063284725 ⟹ XP_063140795

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,751,234 - 41,878,396 (-)	NCBI

RefSeq Acc Id:

XM_063284726 ⟹ XP_063140796

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,751,234 - 41,878,396 (-)	NCBI

RefSeq Acc Id:

XM_063284727 ⟹ XP_063140797

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,751,234 - 41,879,054 (-)	NCBI

RefSeq Acc Id:

XM_063284728 ⟹ XP_063140798

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,748,922 - 41,808,841 (-)	NCBI

RefSeq Acc Id:

XR_010064704

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,738,096 - 41,877,460 (-)	NCBI

RefSeq Acc Id:

XR_010064705

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,738,096 - 41,877,460 (-)	NCBI

RefSeq Acc Id:

XR_591457

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	41,738,096 - 41,877,460 (-)	NCBI
mRatBN7.2	3	21,328,310 - 21,467,753 (-)	NCBI
Rnor_6.0	3	21,817,680 - 21,956,988 (-)	NCBI

Sequence:

show sequence

AGCGGGGAGCGGACGCGGGCGGAGCGCGGCGGCGCGGGTGCTTTCCAGAGAGCAATTTTCAAAC
ATCTTTGCTTATATTTGACATTGAGCAGTCAGGGGATTCAGGCATATGAGGAGGTACTGTTACC
CAAAACAGTGTCTAGTGAAGACGACAAGAAAGAGAGAAAAGGATCGTAAAAAGAAGCTAAAATA
CCATAGGAAACCATGAGATCTATTAGATCTTTTGCCAATGATGATCGCCATGTTATGGTGAAAC
ATTCAACAATCTATCCTTCTCCAGAGGAACTTGAAGCTGTGCAAAATATGGTGTCTACTGTTGA
ATGTGCTCTTAAACATGTCTCAGATTGGCTGGACGAAACAAACAAAGGCACAAAACCTGAGGGG
GAGACAGAAGTAAAGAAAGATGACGCTGTGGAAAACTATTCCAAGGATCAAGGTGGCCGGACAT
TGTGTGGTGTAATGAGGATTGGCTTGGTTGCAAAAGGCTTGCTGATTAAAGATGACATGGACCT
GGAGCTGGTCTTAATGTGTAAAGACAAACCCACAGAAACTCTGCTAAATACAGTGAAAGATAAC
CTTCCTATTCAAATTCAGAAACTAACAGAAGAGAAATACCAAGTGGAACAATGTATAAATGAAG
CGTCCATTATAATTCGGAACACGAAAGAGCCAACACTGACTTTGAAGGTGATACTTACTTCCCC
TCTAATTAGGGACGAATTGGAGAAGAAGGATGGAGAAAATGTTATGATGAAAGACCCTCCGGAC
TTATTGGACAGGCAGAAATGCCTGAATGCCTTGGCTTCTCTTCGACATGCCAAATGGTTTCAGG
CAAGGGCAAATGGATTAAAATCATGTGTAATTGTCCTCCGCATTCTGCGTGATTTGTGCAACAG
AGTACCCACATGGGCACCATTGAAAGGATGGCCACTAGAGCTTATATGTGAAAAGTCTATAGGT
ACTTGTAATAGACCTTTGGGCGCTGGGGAGGCCTTGAGACGAGTAATGGAGTGTTTGGCATCTG
GAATACTACTTCCTGGTGGTCCTGGTCTTCATGATCCTTGTGAGCGAGACCCAACCGATGCTCT
AAGCTACATGACCACTCAGCAAAAAGAAGATATCACCCATAGTGCACAGCATGCACTTAGACTA
TCAGCCTTTGGCCAGATTTATAAAGTACTGGAGATGGACCCTCTTCCATCTAGTAAGCCTTTTC
AGAAGTATTCCTGGTCAGTTACTGATAAAGAAGGTGCCGGGTCTTCAGCTCTAAAGAGGCCATT
TGAAGATGGATTAGGGGATGATAAAGATCCCAACAAGAAGATGAAACGAAACTTAAGGAAAATT
CTGGATAGTAAAGCAATAGACCTTATGAATGCACTAATGAGATTAAATCAGATCAGGCCTGGGC
TTCAGTATAAGCTTTTGTCGCAGTCTGGCCCGGTCCATGCCCCAGTCTTCACAATGTCGGTAGA
TGTGGACGGCACAACATACGAAGCCTCAGGACCATCCAAGAAAACAGCAAAGCTTCATGTGGCA
GTGAAGGTTTTACAGGCAATGGGATACCCAACAGGTTTTGATGCAGATATTGAATGTATGAGTT
CCGATGAAAAATCAGATAATGAAAGCAAAAATGATACAGTATCTTCAAACTCAAGCAATAATAC
TGGAAATTGTACAACTGAGACCTCCAGTACCTTAGAGGTAAGAACTCAGGGTCCTATCCTCACA
GCAAGTGGCAAAAATCCTGTGATGGAGCTCAATGAAAAAAGAAGAGGTCTCAAGTATGAACTCA
TCTCAGAAACTGGTGGAAGCCATGACAAGCGCTTTGTAATGGAGGTAGAAGTAGATGGACAGAA
ATTCAGAGGTGCAGGTCCAAACAAGAAAGTGGCCAAGGCAAGTGCAGCGCTAGCTGCCCTGGAA
AAGCTGTTTTCTGGACCCAATGCAGCAAATAATAAGAAAAAGAAGATCATTCCTCAGGCAAAGG
GTGTTGTGAATACGGCAGTATCTGCAGCAGTCCAGGCAGTTCGAGGCAGAGGAAGAGGAACTCT
GACAAGGGGAGCGTTCGTGGGAGCTACAGCAGCTCCTGGATATATAGCTCCAGGTTATGGAACT
CCATATGGTTACAGCACAGCTGCCCCTGCATATGGTTAATACTTTTAAGCAGTTTTCAGCACGT
TTATCTCACTTTATTCTCGTTCTCCTCGGACCTCCGTAGCCATATCACTTGTATAAAATAGGCT
GAGATATAGTGACTGTAAGCTGTGATCTCAGTATTCAAAGCAGTTTCTGTTCATCGCTAGCATT
AAGGCTGCTGGAACTTTGTTCCCACACAGAACCTGCAGTTCATGAGGTCGGCTTCTGTTAAAGG
CTGTACAAAGCAGAGCAGAGAAGAGCAGTGCACTGCAGTCCTGTGCCTGCTGATGCCAGGTCCT
TTTCTGGGACTGGGGATCAGAACAGAGGCTCTGACCAGTGGAAGCATCTTAAGACTGAATGTTT
CCTTGCTGATGGAATTGGCCTTGCTGTAAATAAATACCCTACTTTGGGAGATAGTATATTAACG
GTGGCAAAAGTTATTAATTCACTTAGTAGATTAATTATAAAATACTGAATATTTGTAGGCTTTT
CAATACCACAGAAATTGGTGTTACTTGAGGATTTCCTCAGGTAGCATATTTCCCTGGTATTCTT
GTTCTGGTTATGCCTGAACTTTGCTTTGGTTATGCCACTCATGTTCTGCCCAAGTGTGTGGTCA
GAAAATGAGAAGCTCAGCACCACTGCAGCCCTGCTTTTGGCAGCTCTTTATATAGTCCTGCAAA
GAACTCAATGGGAAATGTAAACCCTTACTACATTCTTTCAGTGGCAGGTGAGTGTTATCATTAT
AAGAAACCATTTGCTGTAATTGTCCTGGTTTTTATTTTTCACTAATGATAGGAGTGGAGGAGAA
GAGTCAGTAATATGTTAGGAAAATGAGCTAGAGATGTTTTTCTTCCCAAACTGTTTGGAACCTG
TAACCAGGGACATTGTAAGGGTGACATGTGAAAGCAGCCCACTCTGAATGGTCTGCCTTTCATT
TCCACTCTTTTAATGCCTCAAGTCACCCAGAGACAGACAGATGCTATTGCATTTAGCTTTATTC
TCTGCAACATCTAGTGTCAGATAGCTAGGGATCATGATTTCTTAGTGTGACTAGGAGGCTTGGG
GAGGGAGATGGGTGGTTTGTCAGTGACAACAGCAGACTCAAGTACCTGGCATCTTGATGAACTT
CAACACTGGTGTGTGTTTCTGTACCACCTAACTTACAGAGCACAGTACAGCCGATTTAAGATGA
GTTCCCCTTTTCGTAATAGTATTTGGCAGAAGACTATTTTAAGTAAAGAATTCATGTTGGATTA
ATTATATAAATAAGTATCCTTTTCCACCTACTATTATTTCAATTGGGGATCTTACAGCTTCCAT
TAATGTTTGAAGCATTGATATTTGGAAGTTTTTAAAAATAGAACCATAATGTAAATTTGGGTTA
TATAAGATTTACAGCATAGTTAGAGATATAGAATAGAAACCATATGAGAATCTGGGCCAAAGCA
TTTCTCTCACTCCAGCCCATTTCTGTGGAACTTGGATATCTCATGACTTTATATATTCAAAGCT
TTTAATGGTACCTGGCACACAGCAAGTATTCTGAACACTGACTCTGCTCTTCTGGTTAAGGTGA
TAGGATGGGTATGAGGGAGGTGAGTCTATGCTGATTTAAGCAGCAGGCGTATGGCCTGCTCAGG
GTAGAGTTGGGCGTACTCCTTTGTGCTCATAGGCTTGGGCAGCTTCCAGGCTGAGGCCAGACTT
GGCAGAACAGGTTTGCTCATATTTCTGCTGCAGCAGTTAAATCAGCCAACTTGCAGTCCAGGGG
TTTTATAAATACTTGTTTAGGATTTATGGGTGCTTAGAATTTTACAAGGGCTGAACTTAGACCA
TCTACCTGCCAATTCCAGTTTCCTACCCACACTGTAGTAATTACAAAACCCACAACGGCCAGAA
TCTAGTTTTCAACGCTTTTGTGTTTGTTGGTAAAGAACAAATTATCATAGGAAGCATACTAACA
ATTTCTGTTGACTCATTTTCTGTGACGAGTTCTTGTTTCATGCTTGGACATTCAGTGGAACACA
TCGGCAGTCATCAGCATGTGATGCCTTCCTCTTATCTGACACACTTAGGGCACTATTAGTCTAG
TCTCCTGTATCTGTCTATCTACCTATTTGGATACAATTGGGAAGTTTCTATTTAATACAAGGAC
ACGTGTCTTGTTGGTAAATTGCTGCTGCTGAACTGAATAAAGGGCTTTTATCTACTATGGAAGT
GCTGGCTCACACATGCTTGCAAAGACTTGATCTCAGAAGAAGAGGGTGGACAGGTTGAGTCCCA
GGCTGGTAGGAGGTGAGTTAAGTGGAAAGTTCCGAGATGCTGTAATTTTAGAAAAATTGTGGTC
AAGGATTGATCACCTTTAAGGAGGCCGGTGAGTTAAACTTGTTACCTAGTAGAAGTTACCATAT
TCCTGCTTAGCTGAAACTGTTGTTAGATTCTTCATCTCACTTAGCCAGCATTTGAAGAAAGGTT
GTTAAAGTAGGCATGCATGCACAACCATCAACAAAACAAACCCCTGCCAACAACAACAACGACG
ACAATCTAAAAAACCAAACCACAACAAAACAACCCTGACCAGTTATCAGAGGAGGATCATGGCC
TTTCTTCCTAGAACTTTACCCATTTGTGCAAGTGGCTGCATTGCTACACAAAGGGGCATTGTAA
CAATTGCACTGTTGCGGTGCACAGGGATGGTCCGCGTCTTGTCTTTGCTGTTGCATGGCTCAGT
GGTACATGACCTCAGCACAGTGGCAGTTAGGACATTGCTGGCCCGCTTCTTTGTTTGAGATTAT
TCTTCCTAGTTTCCTTTGTACAACTAACTATCCTAAATAGTTCAGTTAAAGGCAGCCTTTGTGT
AGGACTTAGGCTTGGCCAACATTTTGACATTATAACATTGTCATCTACAGTGTTCATGTGACAA
CTGTATAACTACCACAAAAATTGACAGGAACTATATTGGGGTCAGAAGAGCTATTTTGGAGAGT
GAGCAGATTTAACAACTCAGAATGGGAATGAGAAAGGAACATTGCTAGACTTGGTGTTGTGGGC
ATGTGTGGCACTGGAACATTCCTAATTCTGAGGCAGCCCTCTTGGAGGTGCTGTTATTTCTGAT
CTAGACATGAATCTAATGTTCAGGGTTAACTGCTAGAGACAGGAATGAATCAAATCTGTGTTTT
TGTACCAAAGCTCCTTTTTGCTCAGTAGGCTACAAATTATAATAAGCAGTGTACACTGGCCCTG
ATTTCTAGGCCGCCTGTATTAAGCATATCTCTGAGCAGAACAGAATACAGGAATTTTTTGCTTT
TTGGGGGTAGGGGTCACTGATGATAAAAGGATATCTAACAAACATAGGATGAAGAAAAAGTGGG
CTGTTGAACAGAGGAAGGTTTTGTGTCTAAAGCTTGTTCTATTTGTATGAAGTACCAAGAGTTC
TCATTAGCTCTTCTTTCTGGGAACGTATTATTCTATGCTTGAGAAAGGTGATCATGGAGTTTGA
GGGGTTTGCTCATGGTGTCTGATATAGAGAGGTAGACCTGGTTAGGTATATAGTAAGGTAGCAC
ATCAAAAGACCCATGCTGATTGAATGGTACTTGACAGTTTGGAATGTGAGTCTTCCCTCCATTT
TAGGCCCAAGGTTCAGTGAACATGACTTCAGAGCTGCAGGGTCTTTGGATGTATTTGTTTCTCA
TCATGATGCTTGCAGGCTACTTCCCGACTTCATCCAATTGCTTAGGGGCAGGAAAATGTGGGGA
TCCGATCTATGCCCCTGATCTATCATCTTTGCCAACTGACACTTTTCCTGCAAAGCATGCTGTG
CTCCAGTGGGGGAATTGGAAGAAAGATTCTTATTCTAACCAAGTTCCAGAGCATCACAGTGTAA
AGGAACAGAGATCTGGATAGAACCCAGAGCACTGTAGCACTTTCCTTTTCTGTGCTCCATTTCT
TGCTCTGAGTCCTGCAGATGTAGTGATGCATGGAATGCTTTTCATGGAACTAAAACCTCAGAGG
TCTTTGCAAACCAACTGCTTATTTGTGGCAAAACACTGTGGCTTCTAATTAGTGAGTATTGAGC
CACACAGAGGAAATTACTTTTCTGTGCTGCTCTGAGGGTTAACAGAAACTCCACTAGGAATTAG
CTTTGAGTCCTGCAACTGAAGGACCTAGAAGTTTGCTCTTATTAGTAAAGTGACTTTACTCAAT
TACATAGTGCTTGGTGTCAGGCTCTGCATGCTCTTGATTGTGTCCTGCTCAGCTGGTCCTGTGC
ATTCCTCACCACCCTACTTCACAAAGGCCATTTGATATGTGTCCTTCTTCTGTTTGGGGCACAT
TCTACTTATCCTTCTTCTAGACTTTGGGGACTATACAGTGTGTGCCTTATAAAATGGAACAAAC
AGAACCAATCGAGCTCTTCTTTTCCCTTTCCTGCCCTAGCTCATGTTCTCCCTGATTCCTGTGG
AAATGGATTGCTAATCAGCTCTAAGCTAGGAAGCCTGGTTTTTTGCTAGTGGCACAGTGGAATA
TTAATAGTCTTGTAATGTTACCAAAACCGTATATAATGAAGTACATCTTAGTGGATGCGCTTGG
AGAAATTCTGGGCTTTTAGAAATGTGATCTATTTTTTTGGGGGGGGGGTTGGCTAGTCCACATG
TGTAGAATCTGTCCTACATATTTGAGTCTACATTAAGAAAAAATAATGGATATCCTCCTCTGAG
ATGTTAAAACAAAATATGGAGATTGTCACTTGAGGAACTCAGAAAAGCTTACGTCACCTAGAAA
CAAGGTCAAAGGACCAGGATGTCAAGGCCAATGAAGGGGTGGCCTTAGGCAAACATGGATAGTC
TTACCAGTTATTTTAAAGGATCTTTATTTACTTATATGTGGTTCAAGAAGGGTAAAGACAACTA
GTGGACAGTTTGACGTGAAGGTGCTACAGGAGTGCAGGTGAGGTGCTTTAGAAGAACACAAGGT
AAGAAAGAAGTGTGACTGTGGGATGCTGATAGCATATGCTGAAGCCTTTGGTGGTGCATGAGGA
AGACTGAGTTCATAATAGTCTTAGCTGTGCAGTGACACCCTGTCAAAAGCAACACCACAGCTAG
TTGCTTTGGGTGGTGTAGAAGAAATTGTGCCATGGGATGTCCATTTTAATCACCTGTGAAAGGA
CTGGGCTACACTGCTGGAAATAGCTCCTCTTTCTTCAGCATATAAACTTGCTGAGAGAAACCTT
CACTCCATTTCTTAACCCTCTACTTTGGCTGTGCTCAGTGTTGGGAATGCCACATGATGAGGTT
TTCAGCCTAGGAGAACTGAACAATGACAAATGACCAGGTGTAAGGAGCAGGAAAGGGAGGTCAG
GAGGTCTAAGCAGAATCAGAGCTGTTCTCCGTAGTAGAATTGCCAAAGCCAGCTGTTCTGCTCT
ACCTGCTCATAGGGATCATATTCCTGGTTTCAGGGTTGATGTCTAATAGGCCCATTTTCAGTTT
TGAAGAGCATGGGAAGAAGAGCCATGGGGTGAGTTGACTTAGAGCATAGGAAGGGCAGAGTCAG
AATTGCAGTAGTCCTTGTCCAAGTGACTCAGACCTTCAGATGGTATAGCACAGAGCAATGAGGG
GATTCTGGAGGGGACCTTGGCAGGGATGTCTGTGACCAGAAGAAGGCGCAGCCTGTTACATCTC
GTGAAATGGTTAATAGGGTGAGATAGTAGGTGGGAGTTATTTTCCAGAACCACCTTTTGAAGAG
CCCTGGGTGCTGTTTTGTGATTACTATTCTTCAGTGTGGTAGGGAAATTGTGAAAGAACAGCCA
GCCAAGAGCCTCATGGTTGGACTGTTGAGAAGGGGGCTGTTGCCACGCCCAGTAAGGATGGAGG
GAGTTGCCAGAGCTGTAGCAGAGATGGGCAGCAGCAGTCTCTGCTCAGAGGTCTGGTTGCTCCA
TTGCACTGTGGAGGGCCACGTCTGTTCTTCATAAGTAGATGTGATGGGCCATCCTATCAGGAGG
GTGGTGCTGCCTCAGACCAGGAAGGTCATGTTTAGAGCCCCTGGGGTGGAGCAAGGGCTCCAAT
GGTGCTGTGGGAAGACGGCATCAGGCATTCCCCCCGCCCCACCCCTTTTATTTTTAACAAGGCT
GGGTCTGCCCATTACAACATGATAGGTACTAGATATTCTCTTATACTGGGGTCTTTTGCTTTCA
TTTAGATTTCTTTTTTTAATTTTAAAAATTTAGCCTGTGTAAGGGCAAGTGCCTTTTGGGGTGT
CTGTATAGTATAGGCTAGCCATTGGAAAGCAATTTTCTCTATAGAGGTTCTTAAGGAAGAAAAA
GATATGTGATTACTAAAGGGTTAATGTCCATCTAGCCATGTCTCTTGGGTGTCATGGACAGGAA
ACCAGGTGGGAATCACAAGGAGCATATTTTTTTTTTTTTTTTTTTTAGTGCTGGGAATGTGTAT
GTGTGTGTCTGTGCACGTGTGTGCGCGCGCATGCTCTTCAAAAGTAGGGCCTATTACATAGTAG
GCTGCTACTATACCAGTGAGTGAATCAGGATGGATTTCTGTGCTACTGAATTTATGTACCTCTT
TTGGGGACTAGACTGGAGGTAGCTATTATTTGGAGGCCCTAGGTCAGAACTTTGGAAAAGTTAA
AGGTATTTGTGATACCAAATCTGTCAGTGAGAACTCCAGGGCCATATAGATGTCATCTTCTCAT
CTGTTACAATGAAAATCTGTTGCGAGCTCTCCTCCTACCCTATGCCAACAACCTTTTCCTTTCC
AGAATCCTTCCAGAATTTACTCACCACATTGGAGAATGGTAAAGAGCTGGATGGGTGGAGTGAG
CATTGTGGGGCACACAGTTGCTACCACACTCTAAACTCTGCAGCATGAAATTACCTCAGATGGT
ATAGGCGTTGGTCTGTGTGGCAGGGTCTAATCACTTATTACTTACATACCAGGCCAGAAGCTAG
CCCTGGCCTTAGACTGTAGAAGATTATTTACCCTTTTATATTTGCCGTTTGGCAGGTTCCAGCT
CTCCTATGCACAGGAAAGTGCAGATCCCATCAGCAGGAAGCGACAGGTACACACTGCTGGGCAA
AGAGTGAGACAGCAGGGCTCAGGAAGGTCCATGATGAGCTCCCAGAGTAGGGAAGATGTTTGCG
TTGGGGAAAGCCCACGGGAGGCAGCAGCTATGTAGTTAGACCTAGAGGATGATGTGGTTTCTCC
AAGAGAACAGGTCCAGATGGTAGAGAGGTTGTGTCTCAGCTACAACCTCTGTGGGGGTGACGAC
AGGCTGAGGAGTGCAGAGTATTCTCTAGGTGGTGGGTAGTTGACAGATGAGTTTAGGAGGGTCA
AGTGACCACAGCCACATTACATTGAATAATGTCACTCTGATCATGGTAGACATGCCTGTGACTA
CAAATGATAACTCTGCTTAGTGTGGGTCAGATGTGTACGGGGTGAGGCACTCTTAGAATCATGA
TGAAAAGTACAGCTGGAATGTTGGAAGGTTTTTGTGCCAGGATGCCTTCGTGATGAATGAGTGG
TGTCACATGACAATTCTTCAGGCCTTTTCTCTCTTGTGAGCCTAGATATCACTAACAACCTTGC
TCTTTTTTTGTATCCAGGCCAATTTTGGCTTTGGCCCGGTGTTTCTAGGGTAAAATTGTGAACA
CATATCCCCATCCTTACCCCCTTTAGAACCAAATCACAGAGCAAGAAAGCTGTATGGAATGTAG
ACACACTTAAAGCCAGTCCTTGCAGCTTTCTACTGACAGCTGACTACTGTCCTGGTGCATCCTG
GCCTGGAGGGTACCCTCTCTTCCAGGTAATTTCCTCAGTGCAGCTTTTAGCCAGGTTGAAAGCA
GCTTTCATTTAGAAAGTTTCAGCAACAACTGCTTGCTTTCAGTCAGTTTTTGTCATCTGCAGAC
ATTCTGCAAGGTGGTATGCTTAGGAGACATATTGGGTGTCTCAAGCCTGTCTTCACTCCCTCTA
GTGCAATGGTTCTCAATCTTCCTAATGCTGCTATCTTTTTAATACAGGTCCTCACTTTGTGGTA
AACCGCAACCAGGAGAATATTATTATTTTTTTTGCTACTTCATAATTACAATTTTGCTATTGTT
ATGAATCATGCCACAGGGGTCTTGCTGCCTGGTCAGATATGGGATACCTCTTTTGGTGATAGAA
GAAGCATTCCTCAACATTTTCTAGAGAAGTTTCTGGGTTCATGGGAGGGAAGATGATTTGTGTA
TGGAATAGAAGGGAGTCTGGCTTTGCCTTGATAGTGTGCAAGTCTGTCTATAGCTGATACTAGG
AATATATTCTCTTTCTGGTTTTTCAAGACAGGGTTTCTCTGTGTATGCCTGGCTGTCCTGGAAC
TCCAGCTATAGACCAGGCTACTCTCAAACTCATGGAGATCTGCCTGCCTCTGCCTCCTGAGTGC
TGGGATTACAGGGTATGCACCACCACATTCGGCTCAGGAATATTCTTTTATTTGGCAGCCAAGT
TCTGAAAAGCGCTATAGCCTCATAGGGTGGTTTTTGTCACTTGGCATGGAATCAGCCAATGATA
GACCTTTGCCTGTTGACTGTATCATAGCCTTCAGTTACAGGCTTAATGCCATGATGATGGTCAA
CATTTTAAATAAAAATCTATGTCCCTTAGCTATTTACACTGTACTTGGAGCCAGAAAAATGTTT
TTATTCCTAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGGG
AAATGAATCAAGAGTAAGGAGAGGAGTATTAAGGTAGTTATAAAGACTGTCTTTCAGGTTCTTC
CTGTAACGTGGAAAGTTGCAATTCTAATTTCTGGTTTCTTGCCTTTCACTGAGTGGTTGATATG
CTCCACCCTTCCTGGCTGAGTGTACCTTCCCACTCTGGCCAAGGAACTTGGCTGTTGTTTAGTG
AATCAGAAACAGGACACAAGGATCTAAGTATAAACCTGTCCCCTGAACATAGTCATGTACCAGC
TGACCCTCAAGGTATCAGTGGTATCCATTTGTGAAGAAAGATTTGGATGTGAGCCCCATGAGCC
TACATTCCACAAGTACTCTACTGTTAACCTGACCCAAGGATAGAAATGTTGCTGCTACCATATG
CATGAAGCCCCTTCTCTAACATTCATCTTTTATGCTCAGGCTGCCTGGTGCCATCAGGTAGTGT
TCACTCCTCACAAAGAATCTAAGGATGTTGAGTGCTGTTTTTTCCTCCTAGCCCACTCCCACGG
TAGTGGTGTGGGTGGTCTTACCTACCCTTATTCATGTTTCTGGAAAAGCATATTTAGTTGCAGA
AACTGCCGGACTTGGCCAGAGCATCCTTAGCCTGTCTAGGGTCCTTGCTTTGTATCCCAGGAAC
TGGGAGTAGCACTGGGCTCATGAAGCACACCAAGGCTCAAAAAACAAGTACTTTGTTGTCCAGG
AGAAAACCTGCCTTTTGGAGAGTTACAGGTGGCATTTTTCTCCTGGCTTTAGCTTATTTGGGTC
TGATGTTGGCCAAGTTAGTGCTTAGGAGTCTGTTTATAATGCCCATTTGTATTTACTGTTTTCC
CAAGTATACAGTGTAAATAGCATAATTTGCAGTACAAAGTCTTTGGCAATAATTTCATGATGTA
TACTGTTAAACATTGGAAACCACAAGCACCACGGACTGCCCCTTGCTTTCTGGGCCTGTGGTGA
CATGTAGACTCTGGACTTTCCAAGTGTCAACGTGCTTGAAGCAGCAGCCTGCATGTGTGGACTA
TCATCAGTGCCTCGCCCAGAGATGCCTGGCCTTCATCCAAAGGGACCCTGCGAGCAGCACCCAC
ACTGCGGCTCCTTTGTGTGGAATATGTTGGACTCTGCCATAGACTCCTTGTCTGGCTGCTGCGG
TTTGTAATGCCTTGACATGTTGCATTTCTTTCCCATTTGGATGAATAAAAATAAACGCTGTGTA
AAATAGGAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_445868	(Get FASTA)	NCBI Sequence Viewer
	XP_008759999	(Get FASTA)	NCBI Sequence Viewer
	XP_038961910	(Get FASTA)	NCBI Sequence Viewer
	XP_038961912	(Get FASTA)	NCBI Sequence Viewer
	XP_038961913	(Get FASTA)	NCBI Sequence Viewer
	XP_038961914	(Get FASTA)	NCBI Sequence Viewer
	XP_038961915	(Get FASTA)	NCBI Sequence Viewer
	XP_063140781	(Get FASTA)	NCBI Sequence Viewer
	XP_063140782	(Get FASTA)	NCBI Sequence Viewer
	XP_063140783	(Get FASTA)	NCBI Sequence Viewer
	XP_063140784	(Get FASTA)	NCBI Sequence Viewer
	XP_063140785	(Get FASTA)	NCBI Sequence Viewer
	XP_063140786	(Get FASTA)	NCBI Sequence Viewer
	XP_063140787	(Get FASTA)	NCBI Sequence Viewer
	XP_063140788	(Get FASTA)	NCBI Sequence Viewer
	XP_063140789	(Get FASTA)	NCBI Sequence Viewer
	XP_063140790	(Get FASTA)	NCBI Sequence Viewer
	XP_063140791	(Get FASTA)	NCBI Sequence Viewer
	XP_063140792	(Get FASTA)	NCBI Sequence Viewer
	XP_063140793	(Get FASTA)	NCBI Sequence Viewer
	XP_063140794	(Get FASTA)	NCBI Sequence Viewer
	XP_063140795	(Get FASTA)	NCBI Sequence Viewer
	XP_063140796	(Get FASTA)	NCBI Sequence Viewer
	XP_063140797	(Get FASTA)	NCBI Sequence Viewer
	XP_063140798	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM00521	(Get FASTA)	NCBI Sequence Viewer
	EDM00522	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000062543
	ENSRNOP00000062543.1
	ENSRNOP00000069392.2
	ENSRNOP00000072689.2
GenBank Protein	Q9JKU6	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_445868 ⟸ NM_053416

- UniProtKB:

Q9JKU6 (UniProtKB/Swiss-Prot), D3ZDD7 (UniProtKB/TrEMBL), A6JET9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MRSIRSFANDDRHVMVKHSTIYPSPEELEAVQNMVSTVECALKHVSDWLDETNKGTKPEGETEV
KKDDAVENYSKDQGGRTLCGVMRIGLVAKGLLIKDDMDLELVLMCKDKPTETLLNTVKDNLPIQ
IQKLTEEKYQVEQCINEASIIIRNTKEPTLTLKVILTSPLIRDELEKKDGENVMMKDPPDLLDR
QKCLNALASLRHAKWFQARANGLKSCVIVLRILRDLCNRVPTWAPLKGWPLELICEKSIGTCNR
PLGAGEALRRVMECLASGILLPGGPGLHDPCERDPTDALSYMTTQQKEDITHSAQHALRLSAFG
QIYKVLEMDPLPSSKPFQKYSWSVTDKEGAGSSALKRPFEDGLGDDKDPNKKMKRNLRKILDSK
AIDLMNALMRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTYEASGPSKKTAKLHVAVKVL
QAMGYPTGFDADIECMSSDEKSDNESKNDTVSSNSSNNTGNCTTETSSTLEVRTQGPILTASGK
NPVMELNEKRRGLKYELISETGGSHDKRFVMEVEVDGQKFRGAGPNKKVAKASAALAALEKLFS
GPNAANNKKKKIIPQAKGVVNTAVSAAVQAVRGRGRGTLTRGAFVGATAAPGYIAPGYGTPYGY
STAAPAYGLPKRMVLLPVMKFPTYPVPHYSFF

hide sequence

RefSeq Acc Id:	XP_008759999 ⟸ XM_008761777
- Peptide Label:	isoform X5
- UniProtKB:	Q9JKU6 (UniProtKB/Swiss-Prot), D3ZDD7 (UniProtKB/TrEMBL), A6JET9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRSIRSFANDDRHVMVKHSTIYPSPEELEAVQNMVSTVECALKHVSDWLDETNKGTKPEGETEV KKDDAVENYSKDQGGRTLCGVMRIGLVAKGLLIKDDMDLELVLMCKDKPTETLLNTVKDNLPIQ IQKLTEEKYQVEQCINEASIIIRNTKEPTLTLKVILTSPLIRDELEKKDGENVMMKDPPDLLDR QKCLNALASLRHAKWFQARANGLKSCVIVLRILRDLCNRVPTWAPLKGWPLELICEKSIGTCNR PLGAGEALRRVMECLASGILLPGGPGLHDPCERDPTDALSYMTTQQKEDITHSAQHALRLSAFG QIYKVLEMDPLPSSKPFQKYSWSVTDKEGAGSSALKRPFEDGLGDDKDPNKKMKRNLRKILDSK AIDLMNALMRLNQIRPGLQYKLLSQSGPVHAPVFTMSVDVDGTTYEASGPSKKTAKLHVAVKVL QAMGYPTGFDADIECMSSDEKSDNESKNDTVSSNSSNNTGNCTTETSSTLEVRTQGPILTASGK NPVMELNEKRRGLKYELISETGGSHDKRFVMEVEVDGQKFRGAGPNKKVAKASAALAALEKLFS GPNAANNKKKKIIPQAKGVVNTAVSAAVQAVRGRGRGTLTRGAFVGATAAPGYIAPGYGTPYGY STAAPAYGLPKRMVLLPVMKFPTYPVPHYSFF hide sequence

RefSeq Acc Id:

ENSRNOP00000072689 ⟸ ENSRNOT00000087611

RefSeq Acc Id:

ENSRNOP00000069392 ⟸ ENSRNOT00000090576

RefSeq Acc Id:

ENSRNOP00000062543 ⟸ ENSRNOT00000066377

RefSeq Acc Id:	XP_038961914 ⟸ XM_039105986
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038961915 ⟸ XM_039105987
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038961910 ⟸ XM_039105982
- Peptide Label:	isoform X4
- UniProtKB:	A0A0G2K3L7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038961912 ⟸ XM_039105984
- Peptide Label:	isoform X4
- UniProtKB:	A0A0G2K3L7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038961913 ⟸ XM_039105985
- Peptide Label:	isoform X4
- UniProtKB:	A0A0G2K3L7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140789 ⟸ XM_063284719
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063140798 ⟸ XM_063284728
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063140787 ⟸ XM_063284717
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063140782 ⟸ XM_063284712
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063140784 ⟸ XM_063284714
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063140781 ⟸ XM_063284711
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063140785 ⟸ XM_063284715
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063140783 ⟸ XM_063284713
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063140786 ⟸ XM_063284716
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063140791 ⟸ XM_063284721
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063140790 ⟸ XM_063284720
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063140792 ⟸ XM_063284722
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063140797 ⟸ XM_063284727
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063140795 ⟸ XM_063284725
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063140796 ⟸ XM_063284726
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063140788 ⟸ XM_063284718
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063140794 ⟸ XM_063284724
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063140793 ⟸ XM_063284723
- Peptide Label:	isoform X5

Protein Domains

DRBM DZF

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620673	AgrOrtholog
BioCyc Gene	G2FUF-49928	BioCyc
Ensembl Genes	ENSRNOG00000010150	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000066377	ENTREZGENE
	ENSRNOT00000066377.3	UniProtKB/TrEMBL
	ENSRNOT00000087611.2	UniProtKB/TrEMBL
	ENSRNOT00000090576.2	UniProtKB/TrEMBL
Gene3D-CATH	1.10.1410.40	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	3.30.160.20	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	3.30.460.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	dsRBD_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	DZF_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	DZF_dom_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	DZF_dom_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	NT_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	STRBP_DSRM_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:84476	UniProtKB/TrEMBL
NCBI Gene	84476	ENTREZGENE
PANTHER	PTHR45762:SF1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZINC FINGER RNA-BINDING PROTEIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	dsrm	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	DZF	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	DZF_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Strbp	PhenoGen
PROSITE	DS_RBD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	DZF	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000010150	RatGTEx
SMART	DSRM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	DZF	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	dsRNA-binding domain-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2JV89_RAT	UniProtKB/TrEMBL
	A0A0G2K3L7	ENTREZGENE, UniProtKB/TrEMBL
	A6JET8_RAT	UniProtKB/TrEMBL
	A6JET9	ENTREZGENE, UniProtKB/TrEMBL
	D3ZDD7	ENTREZGENE, UniProtKB/TrEMBL
	Q9JKU6	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-03-30	Strbp	spermatid perinuclear RNA binding protein		double-stranded RNA-binding protein p74	Name updated	1299863	APPROVED
2004-09-10	Strbp	double-stranded RNA-binding protein p74	Spnr		Symbol and Name updated	1299863	APPROVED
2002-08-07	Spnr	double-stranded RNA-binding protein p74			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD