Galnt1 (polypeptide N-acetylgalactosaminyltransferase 1) - Rat Genome Database

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Gene: Galnt1 (polypeptide N-acetylgalactosaminyltransferase 1) Rattus norvegicus
Analyze
Symbol: Galnt1
Name: polypeptide N-acetylgalactosaminyltransferase 1
RGD ID: 620358
Description: Enables polypeptide N-acetylgalactosaminyltransferase activity. Predicted to be involved in protein O-linked glycosylation via serine and protein O-linked glycosylation via threonine. Predicted to be located in perinuclear region of cytoplasm. Predicted to be active in Golgi apparatus. Orthologous to human GALNT1 (polypeptide N-acetylgalactosaminyltransferase 1); PARTICIPATES IN O-linked glycan biosynthetic pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2-methoxyethanol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: galNAc-T1; polypeptide GalNAc transferase 1; polypeptide GalNAc transferase T1; pp-GaNTase 1; protein-UDP acetylgalactosaminyltransferase 1; UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 1; UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1; UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81815,763,697 - 15,843,598 (+)NCBIGRCr8
mRatBN7.21815,489,015 - 15,568,849 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1815,489,020 - 15,568,245 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1815,704,035 - 15,746,775 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01816,486,744 - 16,529,484 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01815,783,163 - 15,825,912 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01816,141,062 - 16,187,271 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1816,146,447 - 16,185,496 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01815,902,801 - 15,947,610 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41816,013,372 - 16,052,099 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11816,040,017 - 16,078,745 (+)NCBI
Celera1815,467,563 - 15,506,269 (+)NCBICelera
Cytogenetic Map18p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP,ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
2-methoxyethanol  (EXP)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-diaminodiphenylmethane  (EXP,ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
buspirone  (EXP)
carbamazepine  (ISO)
carbon nanotube  (ISO)
chromium(6+)  (ISO)
cobalt dichloride  (ISO)
cocaine  (EXP)
coumestrol  (ISO)
cycloheximide  (ISO)
cyclosporin A  (ISO)
deoxynivalenol  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
dioxygen  (ISO)
disodium selenite  (ISO)
elemental selenium  (ISO)
endosulfan  (EXP)
Enterolactone  (ISO)
ethanol  (ISO)
flutamide  (EXP)
folic acid  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
gold atom  (ISO)
gold(0)  (ISO)
kojic acid  (ISO)
methimazole  (EXP)
methyl methanesulfonate  (ISO)
methylseleninic acid  (ISO)
NAD zwitterion  (ISO)
NAD(+)  (ISO)
NMN zwitterion  (ISO)
paracetamol  (EXP)
perfluorohexanesulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
selenium atom  (ISO)
Soman  (EXP)
succimer  (ISO)
sulfadimethoxine  (EXP)
T-2 toxin  (ISO)
tert-butyl hydroperoxide  (ISO)
topotecan  (ISO)
trichloroethene  (EXP,ISO)
valproic acid  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Cloning and sequence homology of a rat UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase. Hagen FK, etal., Glycoconj J 1995 Dec;12(6):901-9.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. GOA pipeline RGD automated data pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Function of the lectin domain of polypeptide N-acetylgalactosaminyltransferase 1. Tenno M, etal., Biochem Biophys Res Commun 2002 Nov 15;298(5):755-9.
10. Identification of two cysteine residues involved in the binding of UDP-GalNAc to UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1). Tenno M, etal., Eur J Biochem. 2002 Sep;269(17):4308-16. doi: 10.1046/j.1432-1033.2002.03123.x.
11. The lectin domain of UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 1 is involved in O-glycosylation of a polypeptide with multiple acceptor sites. Tenno M, etal., J Biol Chem 2002 Dec 6;277(49):47088-96.
Additional References at PubMed
PMID:9295285   PMID:11278534   PMID:12407114   PMID:12477932   PMID:12506059   PMID:19946888   PMID:22186971  


Genomics

Comparative Map Data
Galnt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81815,763,697 - 15,843,598 (+)NCBIGRCr8
mRatBN7.21815,489,015 - 15,568,849 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1815,489,020 - 15,568,245 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1815,704,035 - 15,746,775 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01816,486,744 - 16,529,484 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01815,783,163 - 15,825,912 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01816,141,062 - 16,187,271 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1816,146,447 - 16,185,496 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01815,902,801 - 15,947,610 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41816,013,372 - 16,052,099 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11816,040,017 - 16,078,745 (+)NCBI
Celera1815,467,563 - 15,506,269 (+)NCBICelera
Cytogenetic Map18p12NCBI
GALNT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381835,580,922 - 35,711,834 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1835,581,117 - 35,711,834 (+)EnsemblGRCh38hg38GRCh38
GRCh371833,160,886 - 33,291,798 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361831,488,594 - 31,545,792 (+)NCBINCBI36Build 36hg18NCBI36
Build 341831,488,593 - 31,545,792NCBI
Celera1830,042,460 - 30,099,740 (+)NCBICelera
Cytogenetic Map18q12.2NCBI
HuRef1830,094,210 - 30,151,471 (+)NCBIHuRef
CHM1_11833,161,549 - 33,218,839 (+)NCBICHM1_1
T2T-CHM13v2.01835,772,406 - 35,903,330 (+)NCBIT2T-CHM13v2.0
Galnt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391824,338,401 - 24,419,873 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1824,338,401 - 24,419,875 (+)EnsemblGRCm39 Ensembl
GRCm381824,205,321 - 24,286,816 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1824,205,344 - 24,286,818 (+)EnsemblGRCm38mm10GRCm38
MGSCv371824,363,845 - 24,445,317 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361824,348,451 - 24,428,655 (+)NCBIMGSCv36mm8
Celera1041,782,754 - 41,783,526 (-)NCBICelera
Cytogenetic Map18A2NCBI
cM Map1812.9NCBI
Galnt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540222,319,198 - 22,379,435 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540222,311,045 - 22,381,527 (+)NCBIChiLan1.0ChiLan1.0
GALNT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21752,969,024 - 53,099,913 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11838,662,476 - 38,792,713 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01828,872,609 - 28,958,517 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11832,460,262 - 32,517,154 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1832,460,262 - 32,517,154 (+)Ensemblpanpan1.1panPan2
GALNT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1754,390,144 - 54,512,908 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl754,391,917 - 54,453,885 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha753,814,786 - 53,935,557 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0754,360,522 - 54,481,421 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl754,362,519 - 54,426,510 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1754,043,282 - 54,164,066 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0754,066,799 - 54,187,385 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0754,359,554 - 54,480,423 (-)NCBIUU_Cfam_GSD_1.0
Galnt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494450,118,859 - 50,203,510 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365179,443,559 - 9,530,898 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365179,446,115 - 9,530,915 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GALNT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6119,310,421 - 119,493,883 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16119,295,896 - 119,493,901 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26111,908,185 - 112,008,956 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GALNT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11845,080,786 - 45,156,776 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1845,077,944 - 45,139,410 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605019,577,174 - 19,652,880 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Galnt1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247799,958,974 - 10,044,284 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247799,952,387 - 10,044,273 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Galnt1
432 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:422
Count of miRNA genes:225
Interacting mature miRNAs:283
Transcripts:ENSRNOT00000022117
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552968Pigfal19Plasma insulin-like growth factor 1 level QTL 1911.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)18125758124Rat
9590248Scort10Serum corticosterone level QTL 1019.710.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)18125758124Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18130558703Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134291613Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134291613Rat
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135374722Rat
9589153Insul31Insulin level QTL 317.150.05blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)18142547119Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor surface area measurement (CMO:0002078)18224947722066430Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)18224947722066430Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18518585840503530Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181179151863636873Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194179131393320Rat
631264Scl22Serum cholesterol level QTL 226.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)181194179131393320Rat
12904690Cm129Cardiac mass QTL 1290.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)181194427326548295Rat
12904689Cm128Cardiac mass QTL 1280.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)181194427326548295Rat
12904693Am20Aortic mass QTL 200.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)181194427326548295Rat
12904695Kidm73Kidney mass QTL 730.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)181194427326548295Rat
12904691Cm130Cardiac mass QTL 1300.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)181194427326548295Rat
12904680Bw189Body weight QTL 1890.019body mass (VT:0001259)body weight (CMO:0000012)181194427326548295Rat
2301410Bp317Blood pressure QTL 3170.004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194427326548295Rat
1331781Scl28Serum cholesterol level QTL 283.995blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)181194429924797117Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194429931359530Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)181194429941122201Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194429952293055Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
6903359Bp355Blood pressure QTL 3553.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194454459796478Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181495133759951337Rat

Markers in Region
RH136793  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21815,567,664 - 15,567,907 (+)MAPPERmRatBN7.2
Rnor_6.01816,186,092 - 16,186,334NCBIRnor6.0
Rnor_5.01815,946,431 - 15,946,673UniSTSRnor5.0
RGSC_v3.41816,052,846 - 16,053,088UniSTSRGSC3.4
Celera1815,507,016 - 15,507,258UniSTS
RH 3.4 Map18192.4UniSTS
Cytogenetic Map18p12UniSTS
RH132766  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21815,567,934 - 15,568,146 (+)MAPPERmRatBN7.2
Rnor_6.01816,186,362 - 16,186,573NCBIRnor6.0
Rnor_5.01815,946,701 - 15,946,912UniSTSRnor5.0
RGSC_v3.41816,053,116 - 16,053,327UniSTSRGSC3.4
Celera1815,507,286 - 15,507,497UniSTS
RH 3.4 Map18182.4UniSTS
Cytogenetic Map18p12UniSTS
BQ210126  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21815,567,050 - 15,567,229 (+)MAPPERmRatBN7.2
Rnor_6.01816,185,478 - 16,185,656NCBIRnor6.0
Rnor_5.01815,945,817 - 15,945,995UniSTSRnor5.0
RGSC_v3.41816,052,232 - 16,052,410UniSTSRGSC3.4
Celera1815,506,402 - 15,506,580UniSTS
RH 3.4 Map18181.6UniSTS
Cytogenetic Map18p12UniSTS
GALNT1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21815,562,406 - 15,563,364 (+)MAPPERmRatBN7.2
Rnor_6.01816,180,834 - 16,181,791NCBIRnor6.0
Rnor_5.01815,941,173 - 15,942,130UniSTSRnor5.0
RGSC_v3.41816,047,588 - 16,048,545UniSTSRGSC3.4
Celera1815,501,758 - 15,502,715UniSTS
Cytogenetic Map18p12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 10 74 35 38 11 8
Low 1 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000022117   ⟹   ENSRNOP00000022117
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1815,489,020 - 15,568,245 (+)Ensembl
Rnor_6.0 Ensembl1816,146,447 - 16,185,496 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000112420   ⟹   ENSRNOP00000083066
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1815,534,127 - 15,568,245 (+)Ensembl
RefSeq Acc Id: NM_024373   ⟹   NP_077349
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81815,798,922 - 15,841,668 (+)NCBI
mRatBN7.21815,524,169 - 15,566,918 (+)NCBI
Rnor_6.01816,146,447 - 16,185,345 (+)NCBI
Rnor_5.01815,902,801 - 15,947,610 (+)NCBI
RGSC_v3.41816,013,372 - 16,052,099 (+)RGD
Celera1815,467,563 - 15,506,269 (+)RGD
Sequence:
RefSeq Acc Id: XM_039097136   ⟹   XP_038953064
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81815,764,244 - 15,843,598 (+)NCBI
mRatBN7.21815,489,523 - 15,568,849 (+)NCBI
RefSeq Acc Id: XM_039097137   ⟹   XP_038953065
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81815,763,697 - 15,843,598 (+)NCBI
mRatBN7.21815,489,015 - 15,568,849 (+)NCBI
RefSeq Acc Id: XM_063277600   ⟹   XP_063133670
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81815,764,938 - 15,843,598 (+)NCBI
RefSeq Acc Id: XM_063277601   ⟹   XP_063133671
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81815,764,247 - 15,843,598 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_077349   ⟸   NM_024373
- UniProtKB: Q10473 (UniProtKB/Swiss-Prot),   A6J2K1 (UniProtKB/TrEMBL),   A0A8I5ZUR3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000022117   ⟸   ENSRNOT00000022117
RefSeq Acc Id: XP_038953065   ⟸   XM_039097137
- Peptide Label: isoform X1
- UniProtKB: Q10473 (UniProtKB/Swiss-Prot),   A6J2K1 (UniProtKB/TrEMBL),   A0A8I5ZUR3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953064   ⟸   XM_039097136
- Peptide Label: isoform X1
- UniProtKB: Q10473 (UniProtKB/Swiss-Prot),   A6J2K1 (UniProtKB/TrEMBL),   A0A8I5ZUR3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000083066   ⟸   ENSRNOT00000112420
RefSeq Acc Id: XP_063133671   ⟸   XM_063277601
- Peptide Label: isoform X1
- UniProtKB: Q10473 (UniProtKB/Swiss-Prot),   A6J2K1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133670   ⟸   XM_063277600
- Peptide Label: isoform X1
- UniProtKB: Q10473 (UniProtKB/Swiss-Prot),   A6J2K1 (UniProtKB/TrEMBL)
Protein Domains
Ricin B lectin   Ricin B-type lectin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q10473-F1-model_v2 AlphaFold Q10473 1-559 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620358 AgrOrtholog
BioCyc Gene G2FUF-8160 BioCyc
BioCyc Pathway PWY-7433 [mucin core 1 and core 2 O-glycosylation] BioCyc
  PWY-7435 [mucin core 3 and core 4 O-glycosylation] BioCyc
BioCyc Pathway Image PWY-7433 BioCyc
  PWY-7435 BioCyc
Ensembl Genes ENSRNOG00000016207 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055018123 UniProtKB/Swiss-Prot
  ENSRNOG00060012241 UniProtKB/Swiss-Prot
  ENSRNOG00065015137 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000022117.5 UniProtKB/Swiss-Prot
  ENSRNOT00000112420.1 UniProtKB/TrEMBL
  ENSRNOT00055030725 UniProtKB/Swiss-Prot
  ENSRNOT00060020767 UniProtKB/Swiss-Prot
  ENSRNOT00065025076 UniProtKB/Swiss-Prot
Gene3D-CATH 2.80.10.50 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro GalNAc-T UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glyco_trans_2-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ricin_B-like_lectins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ricin_B_lectin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:79214 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 79214 ENTREZGENE
PANTHER N-ACETYLGALACTOSAMINYLTRANSFERASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Glycos_transf_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ricin_B_lectin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Galnt1 PhenoGen
PROSITE RICIN_B_LECTIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000016207 RatGTEx
  ENSRNOG00055018123 RatGTEx
  ENSRNOG00060012241 RatGTEx
  ENSRNOG00065015137 RatGTEx
SMART RICIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50370 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF53448 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5ZUR3 ENTREZGENE, UniProtKB/TrEMBL
  A6J2K1 ENTREZGENE, UniProtKB/TrEMBL
  GALT1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-03-21 Galnt1  polypeptide N-acetylgalactosaminyltransferase 1  Galnt1  UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-17 Galnt1  UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1)  Galnt1  UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-12-14 Galnt1  UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1    polypeptide GalNAc transferase T1  Name updated 1299863 APPROVED