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Gene: Nnat (neuronatin) Rattus norvegicus

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Symbol:

Nnat

Name:

neuronatin

RGD ID:

620155

Description:

Involved in neuron differentiation. Predicted to be located in membrane. Predicted to be active in cytoplasm. Orthologous to human NNAT (neuronatin); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

MGC156562; neuronatin alpha; Peg5

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NNAT (neuronatin)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB
Mus musculus (house mouse):	Nnat (neuronatin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Nnat (neuronatin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NNAT (neuronatin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NNAT (neuronatin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Nnat (neuronatin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NNAT (neuronatin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	NNAT (neuronatin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Nnat (neuronatin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	NNAT (neuronatin)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Nnat (neuronatin)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	166,646,373 - 166,648,845 (+)	NCBI		GRCr8
mRatBN7.2	3	146,225,941 - 146,228,868 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	146,226,407 - 146,228,834 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	150,051,744 - 150,054,205 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	158,552,933 - 158,555,392 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	156,294,850 - 156,297,310 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	154,043,873 - 154,046,334 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	154,043,873 - 154,046,330 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	161,553,358 - 161,557,429 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	148,269,404 - 148,271,781 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	148,175,312 - 148,177,690 (+)	NCBI
Celera	3	144,930,375 - 144,932,836 (+)	NCBI		Celera
Cytogenetic Map	3	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Aicardi-Goutieres Syndrome 5 (ISO)

congenital disorder of glycosylation (ISO)

focal epilepsy (ISO)

lung non-small cell carcinoma (ISO)

neuroblastoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17alpha-ethynylestradiol (EXP,ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

3,3',5-triiodo-L-thyronine (EXP)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

5-aza-2'-deoxycytidine (EXP,ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

ammonium chloride (EXP)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

Benzo[k]fluoranthene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Butylbenzyl phthalate (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

Cuprizon (EXP)

dexamethasone (ISO)

diazinon (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (ISO)

diethyl phthalate (ISO)

diisobutyl phthalate (ISO)

diisononyl phthalate (ISO)

dioxygen (ISO)

diuron (EXP)

ellagic acid (ISO)

endosulfan (EXP)

ethanol (ISO)

flavonoids (EXP)

folic acid (ISO)

furan (EXP)

gentamycin (EXP)

L-ascorbic acid (ISO)

Licochalcone B (ISO)

lidocaine (ISO)

N-methyl-4-phenylpyridinium (EXP)

N-methyl-N-nitrosourea (EXP)

naphthalene (ISO)

niclosamide (ISO)

nigericin (EXP)

nitroglycerin (EXP)

ozone (ISO)

paraquat (EXP)

perfluorohexanesulfonic acid (ISO)

perfluorooctanoic acid (EXP)

PhIP (EXP)

pirinixic acid (ISO)

resveratrol (ISO)

rotenone (EXP)

sodium arsenate (ISO)

sodium arsenite (ISO)

Soman (EXP)

tamoxifen (ISO)

tetrachloromethane (ISO)

thapsigargin (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trimellitic anhydride (ISO)

triptonide (ISO)

trovafloxacin (ISO)

tunicamycin (ISO)

valinomycin (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

brain development (IEA)

establishment of localization in cell (ISO)

insulin secretion (ISO)

neuron differentiation (IEP)

positive regulation of insulin secretion (IBA,ISO)

regulation of protein localization (ISO)

response to glucose (ISO)

Cellular Component

cytoplasm (IBA,ISO)

membrane (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Molecular cloning of a novel mRNA (neuronatin) that is highly expressed in neonatal mammalian brain.	Joseph R, etal., Biochem Biophys Res Commun 1994 Jun 30;201(3):1227-34.
4.	Neuronatin mRNA: alternatively spliced forms of a novel brain-specific mammalian developmental gene.	Joseph R, etal., Brain Res 1995 Aug 28;690(1):92-8.
5.	Neuronatin mRNA in PC12 cells: downregulation by nerve growth factor.	Joseph R, etal., Brain Res 1996 Oct 28;738(1):32-8.
6.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Identification of cell-specific messenger ribonucleic acids in oxytocinergic and vasopressinergic magnocellular neurons in rat supraoptic nucleus by single-cell differential hybridization.	Yamashita M, etal., Endocrinology 2002 Nov;143(11):4464-76.

Additional References at PubMed

PMID:12477932	PMID:15793245	PMID:19851307	PMID:20509861	PMID:21935485	PMID:24370184	PMID:30869556	PMID:31805566

Genomics

Comparative Map Data

Nnat
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	166,646,373 - 166,648,845 (+)	NCBI		GRCr8
mRatBN7.2	3	146,225,941 - 146,228,868 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	146,226,407 - 146,228,834 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	150,051,744 - 150,054,205 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	158,552,933 - 158,555,392 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	156,294,850 - 156,297,310 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	154,043,873 - 154,046,334 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	154,043,873 - 154,046,330 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	161,553,358 - 161,557,429 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	148,269,404 - 148,271,781 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	148,175,312 - 148,177,690 (+)	NCBI
Celera	3	144,930,375 - 144,932,836 (+)	NCBI		Celera
Cytogenetic Map	3	q42	NCBI

NNAT
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	37,521,250 - 37,523,690 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	37,521,206 - 37,523,690 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	36,149,652 - 36,152,092 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	35,583,021 - 35,585,506 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	20	35,583,020 - 35,585,502	NCBI
Celera	20	32,856,869 - 32,859,355 (+)	NCBI		Celera
Cytogenetic Map	20	q11.23	NCBI
HuRef	20	32,885,325 - 32,887,812 (+)	NCBI		HuRef
CHM1_1	20	36,052,423 - 36,054,893 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	20	39,245,345 - 39,247,787 (+)	NCBI		T2T-CHM13v2.0

Nnat
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	157,401,936 - 157,404,445 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	157,401,998 - 157,404,442 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	157,560,078 - 157,562,525 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	157,560,078 - 157,562,522 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	157,385,846 - 157,388,258 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	157,251,564 - 157,253,945 (+)	NCBI		MGSCv36	mm8
Celera	2	163,504,157 - 163,506,569 (+)	NCBI		Celera
Cytogenetic Map	2	H1	NCBI
cM Map	2	78.4	NCBI

Nnat
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955445	19,121,164 - 19,125,514 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955445	19,121,164 - 19,125,514 (-)	NCBI	ChiLan1.0	ChiLan1.0

NNAT
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	43,246,341 - 43,251,217 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	43,239,925 - 43,244,315 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	33,842,071 - 33,845,575 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	34,955,233 - 34,959,493 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	34,955,234 - 34,959,493 (+)	Ensembl	panpan1.1		panPan2

NNAT
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	26,119,153 - 26,121,573 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	26,118,991 - 26,120,906 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	25,764,843 - 25,767,256 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	26,815,822 - 26,818,235 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	26,815,835 - 26,817,449 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	26,091,104 - 26,093,520 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	26,198,494 - 26,200,910 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	26,686,053 - 26,688,469 (+)	NCBI		UU_Cfam_GSD_1.0

Nnat
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	175,007,353 - 175,009,820 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936561	3,739,664 - 3,742,154 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936561	3,739,664 - 3,744,015 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NNAT
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	17	40,625,990 - 40,629,523 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	46,042,960 - 46,045,928 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NNAT
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	26,229,765 - 26,232,249 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	26,230,696 - 26,232,127 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666050	75,102,293 - 75,105,653 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Nnat
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624842	2,122,968 - 2,125,490 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Nnat
9 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	787
Count of miRNA genes:	252
Interacting mature miRNAs:	321
Transcripts:	ENSRNOT00000034166, ENSRNOT00000068863, ENSRNOT00000072502
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
12879876	Bw182	Body weight QTL 182		0.003	body mass (VT:0001259)	body weight (CMO:0000012)	3	145925360	166177555	Rat
2301411	Bp320	Blood pressure QTL 320		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	145925360	166177555	Rat
2312673	Scl63	Serum cholesterol level QTL 63		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	98535255	168026850	Rat
1300113	Bp176	Blood pressure QTL 176	3.9		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	145956084	157309487	Rat
12879872	Cm97	Cardiac mass QTL 97		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	145925360	166177555	Rat
1598877	Bp285	Blood pressure QTL 285	1.5	0.03	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	120538241	165538241	Rat
1578653	Vnigr3	Vascular neointimal growth QTL 3	3.1		artery morphology trait (VT:0002191)	artery neointimal hyperplastic lesion area (CMO:0001414)	3	130656562	169034231	Rat
12879873	Cm96	Cardiac mass QTL 96		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	145925360	166177555	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	98535386	161695835	Rat
12879874	Cm98	Cardiac mass QTL 98		0.005	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	145925360	166177555	Rat
1298068	Bp167	Blood pressure QTL 167		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	141074471	169034231	Rat
12879875	Kidm64	Kidney mass QTL 64		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	145925360	166177555	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	31172320	163586636	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	47233211	147415807	Rat
2298477	Eau4	Experimental allergic uveoretinitis QTL 4		0.0011	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	3	137398739	169034231	Rat
8552791	Vie2	Viral induced encephalitis QTL 2	4.1		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	3	145956084	169034231	Rat
61335	Bp20	Blood pressure QTL 20	3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	141339236	155617360	Rat
1581568	Rf53	Renal function QTL 53			urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	3	56395968	161299569	Rat
2317883	Alcrsp26	Alcohol response QTL 26	1.8	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	3	145526770	169034231	Rat
1578754	Stresp16	Stress response QTL 16	4	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	3	112681431	157681431	Rat
1331726	Bp208	Blood pressure QTL 208	3.129		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	141339013	162184794	Rat
1598854	Memor10	Memory QTL 10	2		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	3	145956084	161299569	Rat
9589106	Insul23	Insulin level QTL 23	13.86	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	3	131635904	169034231	Rat
10755461	Coatc16	Coat color QTL 16			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	3	122438700	167438700	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	59242096	157323038	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	43827364	169034231	Rat
2303620	Vencon4	Ventilatory control QTL 4	3.9		respiration trait (VT:0001943)	tidal volume (CMO:0000222)	3	127162703	168026850	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	94856903	159898684	Rat
1576306	Schws3	Schwannoma susceptibility QTL 3		0.001	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	3	118839124	163839124	Rat
619618	Rf3	Renal disease susceptibility QTL 3	6.5	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate to body weight ratio (CMO:0001270)	3	107693393	152693393	Rat
1300159	Kidm4	Kidney mass QTL 4	3.83		kidney mass (VT:0002707)	right kidney wet weight to body weight ratio (CMO:0001953)	3	121056165	157309487	Rat
5686842	Rf59	Renal function QTL 59			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	3	140069424	146976080	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	41874578	155617519	Rat
2312659	Slep7	Serum leptin concentration QTL 7		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	3	98535255	168026850	Rat
631673	Iddm13	Insulin dependent diabetes mellitus QTL 13	1.3	0.663	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	3	130193298	161695983	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	41874578	155617519	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	78196190	146592722	Rat
1578656	Vnigr2	Vascular neointimal growth QTL 2	4.2		artery morphology trait (VT:0002191)	lesioned artery residual lumen area (CMO:0001417)	3	130656562	169034231	Rat
8552952	Pigfal13	Plasma insulin-like growth factor 1 level QTL 13			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	3	138799500	169034231	Rat
12879871	Am7	Aortic mass QTL 7		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	145925360	166177555	Rat
631541	Bp81	Blood pressure QTL 81	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	124122556	169034231	Rat
2293087	Iddm27	Insulin dependent diabetes mellitus QTL 27	2.68		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	97551417	147415807	Rat
2312670	Bw94	Body weight QTL 94		0.01	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	3	98535255	168026850	Rat

Markers in Region

BI286603

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	146,228,606 - 146,228,775 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	154,046,073 - 154,046,241	NCBI	Rnor6.0
Rnor_5.0	3	161,553,451 - 161,553,619	UniSTS	Rnor5.0
RGSC_v3.4	3	148,271,523 - 148,271,691	UniSTS	RGSC3.4
Celera	3	144,932,575 - 144,932,743	UniSTS
RH 3.4 Map	3	1352.6	UniSTS
Cytogenetic Map	3	q42	UniSTS

AA858569

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	146,228,607 - 146,228,827 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	154,046,074 - 154,046,293	NCBI	Rnor6.0
Rnor_5.0	3	161,553,399 - 161,553,618	UniSTS	Rnor5.0
RGSC_v3.4	3	148,271,524 - 148,271,743	UniSTS	RGSC3.4
Celera	3	144,932,576 - 144,932,795	UniSTS
RH 3.4 Map	3	1353.3	UniSTS
Cytogenetic Map	3	q42	UniSTS

BF413147

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	3	166,648,127 - 166,648,279 (+)	Marker Load Pipeline
mRatBN7.2	3	146,228,150 - 146,228,302 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	154,045,617 - 154,045,768	NCBI	Rnor6.0
Rnor_5.0	3	161,553,924 - 161,554,075	UniSTS	Rnor5.0
RGSC_v3.4	3	148,271,067 - 148,271,218	UniSTS	RGSC3.4
Celera	3	144,932,119 - 144,932,270	UniSTS
RH 3.4 Map	3	1354.1	UniSTS
Cytogenetic Map	3	q42	UniSTS

BI281696

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	146,228,368 - 146,228,531 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	154,045,835 - 154,045,997	NCBI	Rnor6.0
Rnor_5.0	3	161,553,695 - 161,553,857	UniSTS	Rnor5.0
RGSC_v3.4	3	148,271,285 - 148,271,447	UniSTS	RGSC3.4
Celera	3	144,932,337 - 144,932,499	UniSTS
RH 3.4 Map	3	1352.3	UniSTS
Cytogenetic Map	3	q42	UniSTS

Nnat

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	146,228,077 - 146,228,693 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	154,045,544 - 154,046,159	NCBI	Rnor6.0
Rnor_5.0	3	161,553,533 - 161,554,148	UniSTS	Rnor5.0
RGSC_v3.4	3	148,270,994 - 148,271,609	UniSTS	RGSC3.4
Celera	3	144,932,046 - 144,932,661	UniSTS
Cytogenetic Map	3	q42	UniSTS

Nnat

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	146,228,502 - 146,228,697 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	154,045,969 - 154,046,163	NCBI	Rnor6.0
Rnor_5.0	3	161,553,529 - 161,553,723	UniSTS	Rnor5.0
RGSC_v3.4	3	148,271,419 - 148,271,613	UniSTS	RGSC3.4
Celera	3	144,932,471 - 144,932,665	UniSTS
Cytogenetic Map	3	q42	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001270867	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429813	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429814	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429815	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_053601	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_181687	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_073089	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762390	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592086	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284795	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC127473	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB711943	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DY315493	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM037467	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212548	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213121	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213143	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213576	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U08290	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U09785	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000034166 ⟹ ENSRNOP00000034212

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	146,226,416 - 146,228,834 (+)	Ensembl
Rnor_6.0 Ensembl	3	154,043,873 - 154,046,330 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000072502 ⟹ ENSRNOP00000064325

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	146,226,407 - 146,228,834 (+)	Ensembl
Rnor_6.0 Ensembl	3	154,043,873 - 154,046,330 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098078 ⟹ ENSRNOP00000096996

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	146,226,416 - 146,228,108 (+)	Ensembl

RefSeq Acc Id:

NM_001270867 ⟹ NP_001257796

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	166,646,384 - 166,648,845 (+)	NCBI
mRatBN7.2	3	146,226,407 - 146,228,868 (+)	NCBI
Rnor_6.0	3	154,043,873 - 154,046,334 (+)	NCBI
Rnor_5.0	3	161,553,358 - 161,557,429 (-)	NCBI
Celera	3	144,930,375 - 144,932,836 (+)	NCBI

Sequence:

show sequence

GTGGCAGGAGGGTACTTAAGGCGCGGCCACCGGGGCTGCGGCATTGCGCCCAGCAGCGGACTCC
GAGATCCATAGACCTCGGCGAACCCTTGCTCTCGACCACCCACCCACTTTCGGAACCATGGCCG
CAGTGGCAGCAGCCTCGGCAGAACTGCTCATCATCGGCTGGTACATCTTCCGCGTGCTGCTGCA
GGTGTTCCTGGAATGCTGCATTTACTGGGTGTTCAGGTACTCCCTGCAGAAGCTGGCGCACACG
GTGTCCCGGACCGGGCGGCAGGTGCTGGGGGAGCGCAGGCACCGAGCCCCCAACTGAGGCCCCA
TCTCCCAGCCCTGGGCGGCCGTGTCATCAGGTGCTCCTGTGCTTCTCGACCAGCATGGGAGCCA
ATGCCGCGCAGGAATGGGGGGTCCCCTGTGCTCCCTCGTCAGAGGAGCACTTGCCAAGGTCAGT
GAGGGGCCGGTAGGTCCCCAGAAAAGCAGCACCGACAATGATGAAGACATCAGTTCCTTTCCCA
GCCCCCTCCCCCCTTTGCCCCTGTCCCATGGCCGGCGGGTGGGAGAGGATGGGGGAAGAGGGGA
GCAACCCTCGAGATATGGGCGTAGGCACCACATTCTGATCTGGACCAAGTTGGAACAGCACCAT
CTCAGCCGCACAAGATCCTACCATGGAGAGCTAACACCCCACCAACCAGCAGAATGGACATTCT
GACATCACCAGCTGAAACCCTGAATCTCGGTGCAGAAGAGAAAGTGTCAACTGCGTGCAGCACT
GGGGGAGTGGAGGGTGTGGGTGGTGGAGGAAGAGGGTTAAGAAAACTAGTGGGGCCCTCTTGCT
GTCCCTTGCCTATGGCACGCATATTCCTGCCTTGCTCCCTCACTCCCCCTCTCCCCTGCCTTCC
AAAGCCCCACCCCCCAAAAATGTGTCACTTGATTCGGACCTATTCAACCAGTAATTGGATCCCA
CCTTTACCAAAACACCGTCTCTGACCCCCGGCCCTTCACTGATCTTGCTTATCCCTGGTCTCAC
GCAGCAGTTGTGGTTGCTATTGTGGTAGTCGCTAATTGTACTAGTTTACGTGTGCATTAGTTGT
GTCTCCCCGGCTAGATTGTAAGCTCCTGGAGACAGGGACCACCTCCACAAAAAATAAAAAAACG
GACCTCTCCTGTCTTGTAGTGTCCTAGGACCCTGCAGGGCAGTGGGGGTGCACCAAAAAAAAAA
AAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_053601 ⟹ NP_446053

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	166,646,384 - 166,648,845 (+)	NCBI
mRatBN7.2	3	146,226,407 - 146,228,868 (+)	NCBI
Rnor_6.0	3	154,043,873 - 154,046,334 (+)	NCBI
Rnor_5.0	3	161,553,358 - 161,557,429 (-)	NCBI
RGSC_v3.4	3	148,269,404 - 148,271,781 (+)	RGD
Celera	3	144,930,375 - 144,932,836 (+)	NCBI

Sequence:

show sequence

GTGGCAGGAGGGTACTTAAGGCGCGGCCACCGGGGCTGCGGCATTGCGCCCAGCAGCGGACTCC
GAGATCCATAGACCTCGGCGAACCCTTGCTCTCGACCACCCACCCACTTTCGGAACCATGGCCG
CAGTGGCAGCAGCCTCGGCAGAACTGCTCATCATCGGCTGGTACATCTTCCGCGTGCTGCTGCA
GGTGTTCCTGGAATGCTGCATTTACTGGGTAGGATTCGCTTTTCGAAATCCTCCAGGGACACAG
CCCATTGCGAGAAGTGAGGTGTTCAGGTACTCCCTGCAGAAGCTGGCGCACACGGTGTCCCGGA
CCGGGCGGCAGGTGCTGGGGGAGCGCAGGCACCGAGCCCCCAACTGAGGCCCCATCTCCCAGCC
CTGGGCGGCCGTGTCATCAGGTGCTCCTGTGCTTCTCGACCAGCATGGGAGCCAATGCCGCGCA
GGAATGGGGGGTCCCCTGTGCTCCCTCGTCAGAGGAGCACTTGCCAAGGTCAGTGAGGGGCCGG
TAGGTCCCCAGAAAAGCAGCACCGACAATGATGAAGACATCAGTTCCTTTCCCAGCCCCCTCCC
CCCTTTGCCCCTGTCCCATGGCCGGCGGGTGGGAGAGGATGGGGGAAGAGGGGAGCAACCCTCG
AGATATGGGCGTAGGCACCACATTCTGATCTGGACCAAGTTGGAACAGCACCATCTCAGCCGCA
CAAGATCCTACCATGGAGAGCTAACACCCCACCAACCAGCAGAATGGACATTCTGACATCACCA
GCTGAAACCCTGAATCTCGGTGCAGAAGAGAAAGTGTCAACTGCGTGCAGCACTGGGGGAGTGG
AGGGTGTGGGTGGTGGAGGAAGAGGGTTAAGAAAACTAGTGGGGCCCTCTTGCTGTCCCTTGCC
TATGGCACGCATATTCCTGCCTTGCTCCCTCACTCCCCCTCTCCCCTGCCTTCCAAAGCCCCAC
CCCCCAAAAATGTGTCACTTGATTCGGACCTATTCAACCAGTAATTGGATCCCACCTTTACCAA
AACACCGTCTCTGACCCCCGGCCCTTCACTGATCTTGCTTATCCCTGGTCTCACGCAGCAGTTG
TGGTTGCTATTGTGGTAGTCGCTAATTGTACTAGTTTACGTGTGCATTAGTTGTGTCTCCCCGG
CTAGATTGTAAGCTCCTGGAGACAGGGACCACCTCCACAAAAAATAAAAAAACGGACCTCTCCT
GTCTTGTAGTGTCCTAGGACCCTGCAGGGCAGTGGGGGTGCACCAAAAAAAAAAAAAAAAAAAA
AAAAA

hide sequence

RefSeq Acc Id:

NM_181687 ⟹ NP_859015

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	166,646,384 - 166,648,845 (+)	NCBI
mRatBN7.2	3	146,226,407 - 146,228,868 (+)	NCBI
Rnor_6.0	3	154,043,873 - 154,046,334 (+)	NCBI
Rnor_5.0	3	161,553,358 - 161,557,429 (-)	NCBI
RGSC_v3.4	3	148,269,404 - 148,271,781 (+)	RGD
Celera	3	144,930,375 - 144,932,836 (+)	NCBI

Sequence:

show sequence

GTGGCAGGAGGGTACTTAAGGCGCGGCCACCGGGGCTGCGGCATTGCGCCCAGCAGCGGACTCC
GAGATCCATAGACCTCGGCGAACCCTTGCTCTCGACCACCCACCCACTTTCGGAACCATGGCCG
CAGTGGCAGCAGCCTCGGCAGAACTGCTCATCATCGGCTGGTACATCTTCCGCGTGCTGCTGCA
GGTGTTCAGGTACTCCCTGCAGAAGCTGGCGCACACGGTGTCCCGGACCGGGCGGCAGGTGCTG
GGGGAGCGCAGGCACCGAGCCCCCAACTGAGGCCCCATCTCCCAGCCCTGGGCGGCCGTGTCAT
CAGGTGCTCCTGTGCTTCTCGACCAGCATGGGAGCCAATGCCGCGCAGGAATGGGGGGTCCCCT
GTGCTCCCTCGTCAGAGGAGCACTTGCCAAGGTCAGTGAGGGGCCGGTAGGTCCCCAGAAAAGC
AGCACCGACAATGATGAAGACATCAGTTCCTTTCCCAGCCCCCTCCCCCCTTTGCCCCTGTCCC
ATGGCCGGCGGGTGGGAGAGGATGGGGGAAGAGGGGAGCAACCCTCGAGATATGGGCGTAGGCA
CCACATTCTGATCTGGACCAAGTTGGAACAGCACCATCTCAGCCGCACAAGATCCTACCATGGA
GAGCTAACACCCCACCAACCAGCAGAATGGACATTCTGACATCACCAGCTGAAACCCTGAATCT
CGGTGCAGAAGAGAAAGTGTCAACTGCGTGCAGCACTGGGGGAGTGGAGGGTGTGGGTGGTGGA
GGAAGAGGGTTAAGAAAACTAGTGGGGCCCTCTTGCTGTCCCTTGCCTATGGCACGCATATTCC
TGCCTTGCTCCCTCACTCCCCCTCTCCCCTGCCTTCCAAAGCCCCACCCCCCAAAAATGTGTCA
CTTGATTCGGACCTATTCAACCAGTAATTGGATCCCACCTTTACCAAAACACCGTCTCTGACCC
CCGGCCCTTCACTGATCTTGCTTATCCCTGGTCTCACGCAGCAGTTGTGGTTGCTATTGTGGTA
GTCGCTAATTGTACTAGTTTACGTGTGCATTAGTTGTGTCTCCCCGGCTAGATTGTAAGCTCCT
GGAGACAGGGACCACCTCCACAAAAAATAAAAAAACGGACCTCTCCTGTCTTGTAGTGTCCTAG
GACCCTGCAGGGCAGTGGGGGTGCACCAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NR_073089

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	166,646,384 - 166,648,845 (+)	NCBI
mRatBN7.2	3	146,226,407 - 146,228,868 (+)	NCBI
Rnor_6.0	3	154,043,873 - 154,046,334 (+)	NCBI
Rnor_5.0	3	161,553,358 - 161,557,429 (-)	NCBI
Celera	3	144,930,375 - 144,932,836 (+)	NCBI

Sequence:

show sequence

GTGGCAGGAGGGTACTTAAGGCGCGGCCACCGGGGCTGCGGCATTGCGCCCAGCAGCGGACTCC
GAGATCCATAGACCTCGGCGAACCCTTGCTCTCGACCACCCACCCACTTTCGGAACCATGGCCG
CAGTGGCAGCAGCCTCGGCAGAACTGCTCATCATCGGCTGGTACATCTTCCGCGTGCTGCTGCA
GACCCTGTCCCCAGTGCGCCCGCGCCCAGCCGGGAACAAAGACTCAGGGGTGCGGCGGTCGCCC
GCTGCGGACGATCGCGACCAACGCGGTGTTCCTGGAATGCTGCATTTACTGGGTAGGATTCGCT
TTTCGAAATCCTCCAGGGACACAGCCCATTGCGAGAAGTGAGGTGTTCAGGTACTCCCTGCAGA
AGCTGGCGCACACGGTGTCCCGGACCGGGCGGCAGGTGCTGGGGGAGCGCAGGCACCGAGCCCC
CAACTGAGGCCCCATCTCCCAGCCCTGGGCGGCCGTGTCATCAGGTGCTCCTGTGCTTCTCGAC
CAGCATGGGAGCCAATGCCGCGCAGGAATGGGGGGTCCCCTGTGCTCCCTCGTCAGAGGAGCAC
TTGCCAAGGTCAGTGAGGGGCCGGTAGGTCCCCAGAAAAGCAGCACCGACAATGATGAAGACAT
CAGTTCCTTTCCCAGCCCCCTCCCCCCTTTGCCCCTGTCCCATGGCCGGCGGGTGGGAGAGGAT
GGGGGAAGAGGGGAGCAACCCTCGAGATATGGGCGTAGGCACCACATTCTGATCTGGACCAAGT
TGGAACAGCACCATCTCAGCCGCACAAGATCCTACCATGGAGAGCTAACACCCCACCAACCAGC
AGAATGGACATTCTGACATCACCAGCTGAAACCCTGAATCTCGGTGCAGAAGAGAAAGTGTCAA
CTGCGTGCAGCACTGGGGGAGTGGAGGGTGTGGGTGGTGGAGGAAGAGGGTTAAGAAAACTAGT
GGGGCCCTCTTGCTGTCCCTTGCCTATGGCACGCATATTCCTGCCTTGCTCCCTCACTCCCCCT
CTCCCCTGCCTTCCAAAGCCCCACCCCCCAAAAATGTGTCACTTGATTCGGACCTATTCAACCA
GTAATTGGATCCCACCTTTACCAAAACACCGTCTCTGACCCCCGGCCCTTCACTGATCTTGCTT
ATCCCTGGTCTCACGCAGCAGTTGTGGTTGCTATTGTGGTAGTCGCTAATTGTACTAGTTTACG
TGTGCATTAGTTGTGTCTCCCCGGCTAGATTGTAAGCTCCTGGAGACAGGGACCACCTCCACAA
AAAATAAAAAAACGGACCTCTCCTGTCTTGTAGTGTCCTAGGACCCTGCAGGGCAGTGGGGGTG
CACCAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_008762390 ⟹ XP_008760612

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	166,646,383 - 166,648,845 (+)	NCBI
mRatBN7.2	3	146,225,941 - 146,228,868 (+)	NCBI
Rnor_6.0	3	154,043,878 - 154,045,574 (+)	NCBI

Sequence:

show sequence

AGGAGGGTACTTAAGGCGCGGCCACCGGGGCTGCGGCATTGCGCCCAGCAGCGGACTCCGAGAT
CCATAGACCTCGGCGAACCCTTGCTCTCGACCACCCACCCACTTTCGGAACCATGGCCGCAGTG
GCAGCAGCCTCGGCAGAACTGCTCATCATCGGCTGGTACATCTTCCGCGTGCTGCTGCAGGTGT
TCCTGGAATGCTGCATTTACTGGGTAGGATTCGCTTTTCGAAATCCTCCAGGGACACAGCCCAT
TGCGAGAAGTGTTCAGGTACTCCCTGCAGAAGCTGGCGCACACGGTGTCCCGGACCGGGCGGCA
GGTGCTGGGGGAGCGCAGGCACCGAGCCCCCAACTGAGGCCCCATCTCCCAGCCCTGGGCGGCC
GTGTCATCAGGTGCTCCTGTGCTTCTCGACCAGCATGGGAGCCAATGCCGCGCAGGAATGGGGG
GTCCCCTGTGCTCCCTCGTCAGAGGAGCACTTGCCAAGGTCAGTGA

hide sequence

RefSeq Acc Id:

XM_063284795 ⟹ XP_063140865

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	166,646,373 - 166,648,845 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001257796	(Get FASTA)	NCBI Sequence Viewer
	NP_001416742	(Get FASTA)	NCBI Sequence Viewer
	NP_001416743	(Get FASTA)	NCBI Sequence Viewer
	NP_001416744	(Get FASTA)	NCBI Sequence Viewer
	NP_446053	(Get FASTA)	NCBI Sequence Viewer
	NP_859015	(Get FASTA)	NCBI Sequence Viewer
	XP_008760612	(Get FASTA)	NCBI Sequence Viewer
	XP_063140865	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA92998	(Get FASTA)	NCBI Sequence Viewer
	AAA92999	(Get FASTA)	NCBI Sequence Viewer
	AAI27474	(Get FASTA)	NCBI Sequence Viewer
	EDL96667	(Get FASTA)	NCBI Sequence Viewer
	EDL96668	(Get FASTA)	NCBI Sequence Viewer
	EDL96669	(Get FASTA)	NCBI Sequence Viewer
	EDL96670	(Get FASTA)	NCBI Sequence Viewer
	EDL96671	(Get FASTA)	NCBI Sequence Viewer
	EDL96672	(Get FASTA)	NCBI Sequence Viewer
	EDL96673	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000034212.3
	ENSRNOP00000064325.2
	ENSRNOP00000096996.1
GenBank Protein	Q62649	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_446053 ⟸ NM_053601
- Peptide Label:	isoform alpha
- UniProtKB:	A0JPK6 (UniProtKB/Swiss-Prot), Q62663 (UniProtKB/Swiss-Prot), Q62649 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAAVAAASAELLIIGWYIFRVLLQVFLECCIYWVGFAFRNPPGTQPIARSEVFRYSLQKLAHTV SRTGRQVLGERRHRAPN hide sequence

RefSeq Acc Id:	NP_859015 ⟸ NM_181687
- Peptide Label:	isoform beta
- UniProtKB:	Q62649 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAAVAAASAELLIIGWYIFRVLLQVFRYSLQKLAHTVSRTGRQVLGERRHRAPN hide sequence

RefSeq Acc Id:	NP_001257796 ⟸ NM_001270867
- Peptide Label:	isoform 3
- UniProtKB:	Q62649 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MAAVAAASAELLIIGWYIFRVLLQVFLECCIYWVFRYSLQKLAHTVSRTGRQVLGERRHRAPN hide sequence

RefSeq Acc Id:	XP_008760612 ⟸ XM_008762390
- Peptide Label:	isoform X2
- Sequence:	show sequence MAAVAAASAELLIIGWYIFRVLLQVFLECCIYWVGFAFRNPPGTQPIARSVQVLPAEAGAHGVP DRAAGAGGAQAPSPQLRPHLPALGGRVIRCSCASRPAWEPMPRRNGGSPVLPRQRSTCQGQ hide sequence

Ensembl Acc Id:

ENSRNOP00000064325 ⟸ ENSRNOT00000072502

Ensembl Acc Id:

ENSRNOP00000034212 ⟸ ENSRNOT00000034166

Ensembl Acc Id:

ENSRNOP00000096996 ⟸ ENSRNOT00000098078

RefSeq Acc Id:	XP_063140865 ⟸ XM_063284795
- Peptide Label:	isoform X1

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q62649-F1-model_v2	AlphaFold	Q62649	1-81	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692613

Promoter ID:

EPDNEW_R3138

Type:

single initiation site

Name:

Nnat_1

Description:

neuronatin

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	154,043,915 - 154,043,975	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620155	AgrOrtholog
BioCyc Gene	G2FUF-47050	BioCyc
Ensembl Genes	ENSRNOG00000024923	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000034166.5	UniProtKB/TrEMBL
	ENSRNOT00000072502.4	UniProtKB/TrEMBL
	ENSRNOT00000098078.1	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:8364201	IMAGE-MGC_LOAD
InterPro	Neuronatin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:94270	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:156562	IMAGE-MGC_LOAD
NCBI Gene	94270	ENTREZGENE
PANTHER	NEURONATIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR15285	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Nnat	PhenoGen
RatGTEx	ENSRNOG00000024923	RatGTEx
UniProt	A0A8I6AR75	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2QVS0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2UKY2	ENTREZGENE, UniProtKB/TrEMBL
	A0JPK6	ENTREZGENE
	A6JWT6_RAT	UniProtKB/TrEMBL
	A6JWT7	ENTREZGENE, UniProtKB/TrEMBL
	A6JWT8	ENTREZGENE, UniProtKB/TrEMBL
	A6JWU0_RAT	UniProtKB/TrEMBL
	NNAT_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	Q62663	ENTREZGENE
UniProt Secondary	A0JPK6	UniProtKB/Swiss-Prot
	Q62663	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-02-26	Nnat	neuronatin			Symbol and Name status set to approved	625702	APPROVED
2002-08-07	Nnat	neuronatin			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_expression	preferentially found in vasopressin (VP)-expressing magnocellular neurons (MCNs)	628363
gene_expression	expressed in thyroid tumors	628363
gene_expression	strongly expressed in neonatal rat brain, with a subsequent decreased expression in juveniles and adults; expressed in endocrine cells, including pancreatic b-cells and PC-12 cells	628363
gene_homology	homologous to PMP-1, an H+-ATPase subunit	628363
gene_mapping	gene maps to distal chromosome 2 in an imprinting region where mutations can lead to developmental abnormalities	628363
gene_process	may mediate regulation of ions during brain development	628363
gene_protein	54 and 81 kDa	628363
gene_protein	81 amino acids	729024
gene_regulation	gene is paternally expressed and imprinted	628363
gene_transcript	contains three exons producing two alternatively spliced mRNA	628363

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD