Imported Disease Annotations - ClinVarTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | genetic disease | | ISO | MGAT5 (Homo sapiens) | 8554872 | ClinVar Annotator: match by term: Inborn genetic diseases | ClinVar | | |
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Imported Disease Annotations - ClinVarTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | genetic disease | | ISO | MGAT5 (Homo sapiens) | 8554872 | ClinVar Annotator: match by term: Inborn genetic diseases | ClinVar | | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | Rat ISS GO annotations from GOA human gene data--August 2006 | GOA data from the GO Consortium |
3. | Rat ISS GO annotations from MGI mouse gene data--August 2006 | MGD data from the GO Consortium |
4. | Narrowing a region on rat chromosome 13 that protects against hypertension in Dahl SS-13BN congenic strains. | Moreno C, etal., Am J Physiol Heart Circ Physiol. 2011 Apr;300(4):H1530-5. doi: 10.1152/ajpheart.01026.2010. Epub 2011 Jan 21. |
5. | Electronic Transfer of LocusLink and RefSeq Data | NCBI rat LocusLink and RefSeq merged data July 26, 2002 |
6. | KEGG Annotation Import Pipeline | Pipeline to import KEGG annotations from KEGG into RGD |
7. | GOA pipeline | RGD automated data pipeline |
8. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
9. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
10. | Isolation, characterization, and expression of a cDNA encoding N-acetylglucosaminyltransferase V. | Shoreibah M, etal., J Biol Chem 1993 Jul 25;268(21):15381-5. |
PMID:10395745 | PMID:14561752 | PMID:16413118 | PMID:18064521 | PMID:18343992 | PMID:23376485 | PMID:23533145 | PMID:24619415 | PMID:24846175 | PMID:30140003 | PMID:38499842 |
Mgat5 (Rattus norvegicus - Norway rat) |
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MGAT5 (Homo sapiens - human) |
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Mgat5 (Mus musculus - house mouse) |
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Mgat5 (Chinchilla lanigera - long-tailed chinchilla) |
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MGAT5 (Pan paniscus - bonobo/pygmy chimpanzee) |
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MGAT5 (Canis lupus familiaris - dog) |
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Mgat5 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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MGAT5 (Sus scrofa - pig) |
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MGAT5 (Chlorocebus sabaeus - green monkey) |
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Mgat5 (Heterocephalus glaber - naked mole-rat) |
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Variants in Mgat5
2172 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
D13Rat174 |
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D13Got11 |
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D13Got18 |
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D13Got17 |
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D13Hmgc40 |
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RH139379 |
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BF387978 |
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BI292164 |
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STS-Z41143 |
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alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 2 | 6 | 15 | 64 | 35 | 18 | 7 | ||||||
Low | 1 | 42 | 51 | 41 | 4 | 41 | 7 | 7 | 10 | 23 | 4 | 7 | |
Below cutoff | 1 | 1 | 4 | 1 |
RefSeq Transcripts | NM_023095 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_008769499 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017598934 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039091088 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063272594 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063272595 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063272596 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AB294577 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AB294578 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH473958 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000013 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
L14284 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000004995 ⟹ ENSRNOP00000004995 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000073921 ⟹ ENSRNOP00000067101 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000100469 ⟹ ENSRNOP00000076422 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_023095 ⟹ NP_075583 | ||||||||||||||||||||||||||||
RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_017598934 ⟹ XP_017454423 | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_039091088 ⟹ XP_038947016 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_063272594 ⟹ XP_063128664 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063272595 ⟹ XP_063128665 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063272596 ⟹ XP_063128666 | ||||||||
Type: | CODING | ||||||||
Position: |
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Protein RefSeqs | NP_075583 | (Get FASTA) | NCBI Sequence Viewer |
XP_017454423 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038947016 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063128664 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063128665 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063128666 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAA41665 | (Get FASTA) | NCBI Sequence Viewer |
BAF94223 | (Get FASTA) | NCBI Sequence Viewer | |
BAF94243 | (Get FASTA) | NCBI Sequence Viewer | |
EDM09894 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000004995 | ||
ENSRNOP00000004995.2 | |||
ENSRNOP00000076422.1 | |||
ENSRNOP00055017740 | |||
ENSRNOP00060007652 | |||
ENSRNOP00065011694 | |||
GenBank Protein | Q08834 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_075583 ⟸ NM_023095 |
- UniProtKB: | Q08834 (UniProtKB/Swiss-Prot), A9CMA3 (UniProtKB/TrEMBL), A9CMD1 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_017454423 ⟸ XM_017598934 |
- Peptide Label: | isoform X1 |
- UniProtKB: | Q08834 (UniProtKB/Swiss-Prot), A9CMA3 (UniProtKB/TrEMBL), A9CMD1 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000004995 ⟸ ENSRNOT00000004995 |
RefSeq Acc Id: | XP_038947016 ⟸ XM_039091088 |
- Peptide Label: | isoform X2 |
RefSeq Acc Id: | ENSRNOP00000067101 ⟸ ENSRNOT00000073921 |
RefSeq Acc Id: | ENSRNOP00000076422 ⟸ ENSRNOT00000100469 |
RefSeq Acc Id: | XP_063128664 ⟸ XM_063272594 |
- Peptide Label: | isoform X1 |
- UniProtKB: | Q08834 (UniProtKB/Swiss-Prot), A9CMA3 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_063128666 ⟸ XM_063272596 |
- Peptide Label: | isoform X1 |
- UniProtKB: | Q08834 (UniProtKB/Swiss-Prot), A9CMA3 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_063128665 ⟸ XM_063272595 |
- Peptide Label: | isoform X1 |
- UniProtKB: | Q08834 (UniProtKB/Swiss-Prot), A9CMA3 (UniProtKB/TrEMBL) |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q08834-F1-model_v2 | AlphaFold | Q08834 | 1-740 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
Database | Acc Id | Source(s) |
AGR Gene | RGD:620100 | AgrOrtholog |
BioCyc Gene | G2FUF-18442 | BioCyc |
BioCyc Pathway | PWY-7426 [complex N-linked glycan biosynthesis (vertebrates)] | BioCyc |
BioCyc Pathway Image | PWY-7426 | BioCyc |
Ensembl Genes | ENSRNOG00000003614 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
ENSRNOG00000049403 | Ensembl | |
ENSRNOG00055012803 | UniProtKB/Swiss-Prot | |
ENSRNOG00060006233 | UniProtKB/Swiss-Prot | |
ENSRNOG00065009668 | UniProtKB/Swiss-Prot | |
Ensembl Transcript | ENSRNOT00000004995 | ENTREZGENE |
ENSRNOT00000004995.5 | UniProtKB/Swiss-Prot | |
ENSRNOT00000100469.1 | UniProtKB/TrEMBL | |
ENSRNOT00055021897 | UniProtKB/Swiss-Prot | |
ENSRNOT00060010266 | UniProtKB/Swiss-Prot | |
ENSRNOT00065015519 | UniProtKB/Swiss-Prot | |
InterPro | DUF4525 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
GlyclTrfase_18 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | rno:65271 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
NCBI Gene | 65271 | ENTREZGENE |
PANTHER | ALPHA-1,6-MANNOSYLGLYCOPROTEIN 6-BETA-N-ACETYLGLUCOSAMINYLTRANSFERASE A | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
ALPHA-MANNOSIDE BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | DUF4525 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Glyco_transf_18 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PhenoGen | Mgat5 | PhenoGen |
RatGTEx | ENSRNOG00000003614 | RatGTEx |
ENSRNOG00000049403 | RatGTEx | |
ENSRNOG00055012803 | RatGTEx | |
ENSRNOG00060006233 | RatGTEx | |
ENSRNOG00065009668 | RatGTEx | |
UniProt | A0A8I5Y5S9_RAT | UniProtKB/TrEMBL |
A6IBV2_RAT | UniProtKB/TrEMBL | |
A9CMA3 | ENTREZGENE, UniProtKB/TrEMBL | |
A9CMD1 | ENTREZGENE, UniProtKB/TrEMBL | |
MGT5A_RAT | UniProtKB/Swiss-Prot, ENTREZGENE |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2021-03-09 | Mgat5 | alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase | LOC100909582 | alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A-like | Data merged from RGD:6503116 | 737654 | PROVISIONAL |
2018-07-05 | Mgat5 | alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase | Mgat5 | mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2013-04-17 | Mgat5 | mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase | LOC679424 | similar to Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase | Data merged from RGD:1588339 | 737654 | PROVISIONAL |
2012-07-05 | LOC100909582 | alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A-like | Symbol and Name status set to provisional | 70820 | PROVISIONAL | ||
2008-08-29 | Mgat5 | mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase | Mgat5 | mannoside acetylglucosaminyltransferase 5 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2006-11-19 | LOC679424 | similar to Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase | Symbol and Name status set to provisional | 70820 | PROVISIONAL | ||
2005-11-17 | Mgat5 | mannoside acetylglucosaminyltransferase 5 | Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase | Name updated | 1299863 | APPROVED | |
2005-01-20 | Mgat5 | Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase | N-acetylglucosaminyltransferase V | Name updated | 1299863 | APPROVED | |
2002-08-07 | Mgat5 | N-acetylglucosaminyltransferase V | Symbol and Name status set to provisional | 70820 | PROVISIONAL |
Note Type | Note | Reference |
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gene_protein | 740 amino acids | 729036 |
gene_protein | type II membrane protein | 729036 |