Suox (sulfite oxidase) - Rat Genome Database

Name: Suox
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Suox (sulfite oxidase) Rattus norvegicus

Analyze

Symbol:

Suox

Name:

sulfite oxidase

RGD ID:

619994

Description:

Enables heme binding activity; molybdopterin cofactor binding activity; and sulfite oxidase activity. Involved in response to nutrient. Predicted to be located in mitochondrial intermembrane space. Predicted to be active in mitochondrion. Biomarker of steatotic liver disease. Human ortholog(s) of this gene implicated in inherited metabolic disorder and isolated sulfite oxidase deficiency. Orthologous to human SUOX (sulfite oxidase); PARTICIPATES IN sulfite oxidase deficiency pathway; sulfur metabolic pathway; INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

sulfite oxidase, mitochondrial

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SUOX (sulfite oxidase)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Suox (sulfite oxidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Suox (sulfite oxidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SUOX (sulfite oxidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SUOX (sulfite oxidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Suox (sulfite oxidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SUOX (sulfite oxidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SUOX (sulfite oxidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Suox (sulfite oxidase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SUOX (sulfite oxidase)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Suox (sulfite oxidase)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	suox (sulfite oxidase)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Suox	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	suox-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	suox	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	1,687,666 - 1,691,759 (-)	NCBI		GRCr8
mRatBN7.2	7	1,103,149 - 1,107,156 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	1,103,151 - 1,107,038 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	3,866,328 - 3,868,898 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	5,742,000 - 5,744,570 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	6,039,038 - 6,041,607 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	3,098,228 - 3,102,179 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	3,098,245 - 3,102,142 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	3,070,928 - 3,074,829 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	1,973,471 - 1,976,040 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	1,973,472 - 1,976,040 (-)	NCBI
Celera	7	973,358 - 975,927 (-)	NCBI		Celera
Cytogenetic Map	7	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

Chemical and Drug Induced Liver Injury (ISO)

Diamond-Blackfan anemia 10 (ISO)

genetic disease (ISO)

inherited metabolic disorder (ISO)

isolated sulfite oxidase deficiency (ISO)

steatotic liver disease (IEP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(-)-epigallocatechin 3-gallate (ISO)

1,1-dichloroethene (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-methylcholine (ISO)

3-chloropropane-1,2-diol (EXP)

4,4'-diaminodiphenylmethane (EXP)

4-hydroxyphenyl retinamide (ISO)

4-octylphenol (ISO)

acetamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

avobenzone (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

cadmium dichloride (EXP)

cannabidiol (ISO)

carbon nanotube (ISO)

chlorpyrifos (ISO)

chromium(6+) (ISO)

cisplatin (EXP)

cobalt dichloride (EXP)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dextran sulfate (ISO)

diazinon (ISO)

Diisodecyl phthalate (ISO)

dioscin (ISO)

epoxiconazole (ISO)

fipronil (EXP)

fluoranthene (ISO)

flutamide (EXP)

folic acid (ISO)

furan (EXP)

gentamycin (EXP)

glafenine (EXP)

hydrogen peroxide (ISO)

iron dichloride (ISO)

ivermectin (ISO)

ketamine (EXP)

lipopolysaccharide (ISO)

menadione (ISO)

mercury dichloride (EXP)

methapyrilene (EXP)

N-nitrosodiethylamine (ISO)

N-nitrosomorpholine (EXP)

nefazodone (EXP)

nimesulide (EXP)

nitrofen (EXP)

paracetamol (EXP,ISO)

paraquat (EXP)

perfluorododecanoic acid (EXP)

perfluorohexanesulfonic acid (ISO)

perfluorononanoic acid (ISO)

perfluorooctanoic acid (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

propiconazole (ISO)

quercetin (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

silicon dioxide (ISO)

sodium arsenite (EXP)

sunitinib (ISO)

T-2 toxin (EXP)

tert-butyl hydroperoxide (ISO)

tetrachloromethane (EXP,ISO)

thapsigargin (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

tunicamycin (ISO)

valdecoxib (EXP)

valproic acid (ISO)

vancomycin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

response to nutrient (IDA)

sulfur compound metabolic process (IBA,IEA)

Cellular Component

mitochondrial intermembrane space (IEA)

mitochondrion (IBA,IEA)

Molecular Function

heme binding (IBA,IDA,IEA)

molybdenum ion binding (IEA)

molybdopterin cofactor binding (IBA,IDA,IEA)

oxidoreductase activity (IEA)

protein binding (ISO)

sulfite oxidase activity (IBA,IDA,IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

sulfite oxidase deficiency pathway (ISO)

sulfur metabolic pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Effect of dietary protein and methionine on sulfite oxidase activity in rats.	Amy NK J Nutr. 1988 Aug;118(8):941-4.
2.	Molecular cloning of rat liver sulfite oxidase. Expression of a eukaryotic Mo-pterin-containing enzyme in Escherichia coli.	Garrett RM and Rajagopalan KV, J Biol Chem 1994 Jan 7;269(1):272-6.
3.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
5.	Isolated sulfite oxidase deficiency: identification of 12 novel SUOX mutations in 10 patients.	Johnson JL, etal., Hum Mutat. 2002 Jul;20(1):74.
6.	KEGG: Kyoto Encyclopedia of Genes and Genomes	KEGG
7.	A proteomic investigation of drug-induced steatosis in rat liver.	Meneses-Lorente G, etal., Chem Res Toxicol. 2004 May;17(5):605-12.
8.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
9.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
10.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
11.	Evidence for participation of the inner membrane in the import of sulfite oxidase into the intermembrane space of liver mitochondria.	Ono H and Ito A, Biochem Biophys Res Commun. 1982 Jul 16;107(1):258-64.
12.	Biosynthesis of sulfite oxidase in rat liver - presence of a large precursor form of the enzyme in cytosol.	Ono H and Ito A, J Biochem (Tokyo). 1982 Jan;91(1):117-23.
13.	Transport of the precursor for sulfite oxidase into intermembrane space of liver mitochondria: characterization of import and processing activities.	Ono H and Ito A, J Biochem (Tokyo). 1984 Feb;95(2):345-52.
14.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
15.	SMPDB Annotation Import Pipeline	Pipeline to import SMPDB annotations from SMPDB into RGD
16.	GOA pipeline	RGD automated data pipeline
17.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
18.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
19.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
20.	Sulphite oxidase gene expression in human brain and in other human and rat tissues.	Woo WH, etal., Biochem Biophys Res Commun 2003 Jun 6;305(3):619-23.

Additional References at PubMed

PMID:2249998	PMID:3393528	PMID:14651853	PMID:17613108	PMID:18614015

Genomics

Comparative Map Data

Suox
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	1,687,666 - 1,691,759 (-)	NCBI		GRCr8
mRatBN7.2	7	1,103,149 - 1,107,156 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	1,103,151 - 1,107,038 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	3,866,328 - 3,868,898 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	5,742,000 - 5,744,570 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	6,039,038 - 6,041,607 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	3,098,228 - 3,102,179 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	3,098,245 - 3,102,142 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	3,070,928 - 3,074,829 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	1,973,471 - 1,976,040 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	1,973,472 - 1,976,040 (-)	NCBI
Celera	7	973,358 - 975,927 (-)	NCBI		Celera
Cytogenetic Map	7	q11	NCBI

SUOX
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	55,997,276 - 56,005,525 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	55,997,180 - 56,006,641 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	56,391,060 - 56,399,309 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	54,677,310 - 54,685,576 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	54,681,548 - 54,685,109	NCBI
Celera	12	56,043,727 - 56,051,993 (+)	NCBI		Celera
Cytogenetic Map	12	q13.2	NCBI
HuRef	12	53,429,929 - 53,438,195 (+)	NCBI		HuRef
CHM1_1	12	56,358,154 - 56,366,418 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	55,964,339 - 55,972,588 (+)	NCBI		T2T-CHM13v2.0

Suox
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	128,505,756 - 128,509,787 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	128,505,763 - 128,509,942 (-)	Ensembl		GRCm39 Ensembl
GRCm38	10	128,669,887 - 128,673,918 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	128,669,894 - 128,674,073 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	128,106,943 - 128,110,974 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	128,072,843 - 128,076,810 (-)	NCBI		MGSCv36	mm8
Celera	10	131,061,992 - 131,066,023 (-)	NCBI		Celera
Cytogenetic Map	10	D3	NCBI
cM Map	10	77.12	NCBI

Suox
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955458	3,585,482 - 3,590,559 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955458	3,584,390 - 3,589,764 (+)	NCBI	ChiLan1.0	ChiLan1.0

SUOX
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	38,324,140 - 38,332,458 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	38,320,911 - 38,329,282 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	32,907,456 - 32,915,788 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	33,157,277 - 33,165,712 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	33,157,277 - 33,165,661 (-)	Ensembl	panpan1.1		panPan2

SUOX
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	327,656 - 331,826 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	327,671 - 331,825 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	389,623 - 393,749 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	334,299 - 338,424 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	334,270 - 338,424 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	312,312 - 316,438 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	554,865 - 558,990 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	679,365 - 683,493 (+)	NCBI		UU_Cfam_GSD_1.0

Suox
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	58,454,620 - 58,458,747 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936646	411,084 - 415,732 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936646	411,543 - 415,709 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SUOX
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	21,395,262 - 21,399,710 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	21,395,246 - 21,399,715 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

SUOX
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	51,935,809 - 51,943,090 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	51,939,809 - 51,942,603 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	194,044,119 - 194,051,273 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Suox
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624802	12,047,270 - 12,054,523 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624802	12,049,787 - 12,054,810 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Suox
14 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	336
Count of miRNA genes:	191
Interacting mature miRNAs:	216
Transcripts:	ENSRNOT00000008018
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2298550	Neuinf6	Neuroinflammation QTL 6	3.3		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	7	1	27829089	Rat
7411566	Bw136	Body weight QTL 136	10.4	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	1	31962314	Rat
9590142	Scort5	Serum corticosterone level QTL 5	24.4	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	1	31962314	Rat
724560	Plsm3	Polydactyly-luxate syndrome (PLS) morphotypes QTL 3		0.0003	tibia length (VT:0004357)	tibia length (CMO:0000450)	7	1	34000259	Rat
2317047	Wbc4	White blood cell count QTL 4		0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	7	1	35342956	Rat
61410	Bw19	Body weight QTL 19	6.2	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	44782185	Rat
631503	Bp102	Blood pressure QTL 102	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	1	44822433	Rat
1300176	Hrtrt10	Heart rate QTL 10	3.19		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	7	664270	26029351	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	924703	115097879	Rat

Markers in Region

Suox

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	1,103,933 - 1,104,884 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	3,099,013 - 3,099,963	NCBI	Rnor6.0
Rnor_5.0	7	3,071,713 - 3,072,663	UniSTS	Rnor5.0
RGSC_v3.4	7	1,974,256 - 1,975,206	UniSTS	RGSC3.4
Celera	7	974,143 - 975,093	UniSTS
Cytogenetic Map	7	q11	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2	35	42	35	1	35		2	64	33	25	11
Low	1	8	15	6	18	6	8	9	10	2	16		8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_031127	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240802	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240803	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264300	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264301	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC098012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC061991	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474104	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	L05084	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000008018 ⟹ ENSRNOP00000008018

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	1,103,152 - 1,107,038 (-)	Ensembl
Rnor_6.0 Ensembl	7	3,098,245 - 3,102,142 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000108072 ⟹ ENSRNOP00000089321

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	7	1,103,151 - 1,105,518 (-)	Ensembl

RefSeq Acc Id:

NM_031127 ⟹ NP_112389

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	1,687,666 - 1,690,235 (-)	NCBI
mRatBN7.2	7	1,103,149 - 1,105,718 (-)	NCBI
Rnor_6.0	7	3,098,228 - 3,100,797 (-)	NCBI
Rnor_5.0	7	3,070,928 - 3,074,829 (-)	NCBI
RGSC_v3.4	7	1,973,471 - 1,976,040 (-)	RGD
Celera	7	973,358 - 975,927 (-)	RGD

Sequence:

show sequence

TCCAGCTAGGTCTGCCACAATGCTGCCTCGGCTATACAGATCTGTGGCTGTGGGGCTTCCGCGG
GCCATCAGAGCCAAGTCAACCCCCTTGAGACTCTGCATTCAAGCATGTTCCTCAAGTGACTCAC
TTAAGCCGCAGCATCCCAGCCTCACCTTTTCTGATGATAACTCAAGGACTCGGGGATGGAAAGT
CATGGGGACCCTGATAGGCCTTGGTGCCGTGCTGGCCTATCATGACCATCGGTGTAGGGCTTCT
CAGGAGTCACCACGGATATACTCTAAAGAGGATGTGCGTTCTCACAACAACCTTCAAACTGGAG
TCTGGGTAACTCTAGGCTCTGAGGTCTTTGATGTCACAAAATTTGTGGACCTGCATCCAGGAGG
ACAATCAAAACTGATGCTAGCTGCTGGAGGTCCCCTAGAACCCTTCTGGGCCCTCTATGCTGTT
CACAACCAGCCCCATGTACGTGAGTTACTGGCTGAGTATAAGATTGGGGAGCTGAACCCCGAAG
ATAGAATGTCCCCTCCCTTGGAGGCCTCTGACCCTTATTCCAATGACCCTATGCGTCATCCAGC
CCTGAGGATTAATAGCCAGCGCCCCTTTAATGCAGAGCCTCCTCCTGAACTGCTTACAGAAAGC
TACATCACACCAAACCCTATTTTCTTTACCCGGAACCATCTGCCTGTACCTAACCTGGACCCAG
ACACCTATCGCTTGCATGTAGTAGGGGCACCTGGAGGTCAGTCGCTCTCTCTCTCCTTGGATGA
TTTGCATAAGTTCCCCAAACATGAGGTCACTGTCACTCTGCAGTGTGCTGGTAACCGGCGCTCG
GAGATGAATAAGGTCAAGGAAGTGAAAGGTCTGGAGTGGAGAACAGGGGCCATCAGCACGGCAC
GCTGGGCCGGGGCACGGCTCTGTGATGTCTTAGCCCAGGCTGGTCACCGACTCCGTGAAACCGA
GGCCCATGTCTGTTTTGAAGGACTGGATTCAGACCCCACTGGAACTGCCTATGGGGCATCCATC
CCTCTGGCTCGGGCCATGGATCCCCAAGCCGAGGTCCTCCTGGCTTATGAGATGAATGGTCAGC
CTCTGCCTCGTGACCATGGCTTCCCCGTAAGGGTGGTGGTTCCTGGTGTGGTAGGTGCTCGCCA
TGTCAAGTGGTTGGGCAGAGTGAGTGTGGAGTCAGAGGAAAGTTATAGTCACTGGCAGAGGCGG
GATTACAAAGGCTTTTCTCCATCTGTGGACTGGGACACTGTAGACTTTGATCTAGCCCCATCAA
TTCAGGAACTACCCATCCAGTCAGCTATCACACAGCCTCAAGATGGGACGACTGTAGAATCAGG
AGAGGTGATTATCAAGGGCTATGCATGGAGTGGTGGTGGTAGGGCTGTGATTCGAGTGGATGTG
TCTATGGATGGTGGACTGACCTGGCAGGAAGCTGAGCTGGAGGGAGAGGAACAGCATCCCAGGA
AGGCCTGGGCTTGGCGAATATGGCAGTTGAAAGCTCACGTGCCAGCTGAGCAGAAGGAATTGAA
CATCATTTGTAAAGCGGTAGATGACAGTTACAACGTGCAGCCAGACACTGTGGCCCCAATCTGG
AACCTTCGAGGCGTGCTCAGCAATGCCTGGCACCGTGTCCACGTTCAGGTGGTTCCATGAAAGC
ATGGAACAGCAGTTTGTACCCAAAGGACCCCTACACCTCTTTACCAACCCAGCCTTAATCCTCG
GTGCCATAGATAAACGTTTCCTTCCTCTACTGAGGGGAGAAAGCAGCTCTCAAGACATCACTTT
CTTACCCTACCATACCTTTACTTCTCATGCCTCCCCTCAGGCCTTGTTTTGCATTGCTTAGATT
CTTCAGATATGTGTGTGATGTATGGAATGTGTAAAAACTGTACGTTATTTCTTTTTCTTCTTCA
TCATCTTGTTTTTTTTCCCTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTC
ACTTTGTAGACCAAACTGCCTGCCTTAGTCTCCAGAATCGGGGGATTAAAGGCATGTGCCGCCA
CTGCCCGTCTACAACTTTCAATCGCCTCTGGGATGCAAGGAGATTTCCCTCTTAGAGTGCTTTT
AAAACGATTCCAATAAAGTGTCTGTTTAAGACTATGACTGGAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006240802 ⟹ XP_006240864

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	1,687,666 - 1,691,759 (-)	NCBI
mRatBN7.2	7	1,103,149 - 1,107,156 (-)	NCBI
Rnor_6.0	7	3,098,228 - 3,102,179 (-)	NCBI
Rnor_5.0	7	3,070,928 - 3,074,829 (-)	NCBI

Sequence:

show sequence

CACGTCACGACCGAGTCCCGCCCCGCCCCGCCCCTCCGCACCGGCCGCTCTAGCCCTGCGCGGG
GCGGGTGAAATTGTTCCGCTGCCGACGTCCAGCTAGGTCTGCCACAATGCTGCCTCGGCTATAC
AGATCTGTGGCTGTGGGGCTTCCGCGGGCCATCAGAGCCAAGTCAACCCCCTTGAGACTCTGCA
TTCAAGCATGTTCCTCAAGTGACTCACTTAAGCCGCAGCATCCCAGCCTCACCTTTTCTGATGA
TAACTCAAGGACTCGGGGATGGAAAGTCATGGGGACCCTGATAGGCCTTGGTGCCGTGCTGGCC
TATCATGACCATCGGTGTAGGGCTTCTCAGGAGTCACCACGGATATACTCTAAAGAGGATGTGC
GTTCTCACAACAACCTTCAAACTGGAGTCTGGGTAACTCTAGGCTCTGAGGTCTTTGATGTCAC
AAAATTTGTGGACCTGCATCCAGGAGGACAATCAAAACTGATGCTAGCTGCTGGAGGTCCCCTA
GAACCCTTCTGGGCCCTCTATGCTGTTCACAACCAGCCCCATGTACGTGAGTTACTGGCTGAGT
ATAAGATTGGGGAGCTGAACCCCGAAGATAGAATGTCCCCTCCCTTGGAGGCCTCTGACCCTTA
TTCCAATGACCCTATGCGTCATCCAGCCCTGAGGATTAATAGCCAGCGCCCCTTTAATGCAGAG
CCTCCTCCTGAACTGCTTACAGAAAGCTACATCACACCAAACCCTATTTTCTTTACCCGGAACC
ATCTGCCTGTACCTAACCTGGACCCAGACACCTATCGCTTGCATGTAGTAGGGGCACCTGGAGG
TCAGTCGCTCTCTCTCTCCTTGGATGATTTGCATAAGTTCCCCAAACATGAGGTCACTGTCACT
CTGCAGTGTGCTGGTAACCGGCGCTCGGAGATGAATAAGGTCAAGGAAGTGAAAGGTCTGGAGT
GGAGAACAGGGGCCATCAGCACGGCACGCTGGGCCGGGGCACGGCTCTGTGATGTCTTAGCCCA
GGCTGGTCACCGACTCCGTGAAACCGAGGCCCATGTCTGTTTTGAAGGACTGGATTCAGACCCC
ACTGGAACTGCCTATGGGGCATCCATCCCTCTGGCTCGGGCCATGGATCCCCAAGCCGAGGTCC
TCCTGGCTTATGAGATGAATGGTCAGCCTCTGCCTCGTGACCATGGCTTCCCCGTAAGGGTGGT
GGTTCCTGGTGTGGTAGGTGCTCGCCATGTCAAGTGGTTGGGCAGAGTGAGTGTGGAGTCAGAG
GAAAGTTATAGTCACTGGCAGAGGCGGGATTACAAAGGCTTTTCTCCATCTGTGGACTGGGACA
CTGTAGACTTTGATCTAGCCCCATCAATTCAGGAACTACCCATCCAGTCAGCTATCACACAGCC
TCAAGATGGGACGACTGTAGAATCAGGAGAGGTGATTATCAAGGGCTATGCATGGAGTGGTGGT
GGTAGGGCTGTGATTCGAGTGGATGTGTCTATGGATGGTGGACTGACCTGGCAGGAAGCTGAGC
TGGAGGGAGAGGAACAGCATCCCAGGAAGGCCTGGGCTTGGCGAATATGGCAGTTGAAAGCTCA
CGTGCCAGCTGAGCAGAAGGAATTGAACATCATTTGTAAAGCGGTAGATGACAGTTACAACGTG
CAGCCAGACACTGTGGCCCCAATCTGGAACCTTCGAGGCGTGCTCAGCAATGCCTGGCACCGTG
TCCACGTTCAGGTGGTTCCATGAAAGCATGGAACAGCAGTTTGTACCCAAAGGACCCCTACACC
TCTTTACCAACCCAGCCTTAATCCTCGGTGCCATAGATAAACGTTTCCTTCCTCTACTGAGGGG
AGAAAGCAGCTCTCAAGACATCACTTTCTTACCCTACCATACCTTTACTTCTCATGCCTCCCCT
CAGGCCTTGTTTTGCATTGCTTAGATTCTTCAGATATGTGTGTGATGTATGGAATGTGTAAAAA
CTGTACGTTATTTCTTTTTCTTCTTCATCATCTTGTTTTTTTTCCCTTCAAGACAGGGTTTCTC
TGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAAACTGCCTGCCTTAGTCTCCAGAA
TCGGGGGATTAAAGGCATGTGCCGCCACTGCCCGTCTACAACTTTCAATCGCCTCTGGGATGCA
AGGAGATTTCCCTCTTAGAGTGCTTTTAAAACGATTCCAATAAAGTGTCTGTTTAAGACTATGA
CTGGAA

hide sequence

RefSeq Acc Id:

XM_006240803 ⟹ XP_006240865

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	1,687,666 - 1,691,561 (-)	NCBI
mRatBN7.2	7	1,103,149 - 1,105,917 (-)	NCBI
Rnor_6.0	7	3,098,228 - 3,102,156 (-)	NCBI
Rnor_5.0	7	3,070,928 - 3,074,829 (-)	NCBI

Sequence:

show sequence

CGCCCCGCCCCTCCGCACCGGCCGCTCTAGCCCTGCGCGGGGCGGGTGAAATTGTTCCGCTGCC
GACGTCCAGCTAGGTCCCTCAGCCTTGGGGCATTGTTCTTCCTAGAAGCCTCTGTACCTTTCTG
CCCCCCACTCCACCCCACTCCTTTCTGCACAGTGTGTCTCCGAGGTGCTCCAAGCTTACTCGTC
TGCCACAATGCTGCCTCGGCTATACAGATCTGTGGCTGTGGGGCTTCCGCGGGCCATCAGAGCC
AAGTCAACCCCCTTGAGACTCTGCATTCAAGCATGTTCCTCAAGTGACTCACTTAAGCCGCAGC
ATCCCAGCCTCACCTTTTCTGATGATAACTCAAGGACTCGGGGATGGAAAGTCATGGGGACCCT
GATAGGCCTTGGTGCCGTGCTGGCCTATCATGACCATCGGTGTAGGGCTTCTCAGGAGTCACCA
CGGATATACTCTAAAGAGGATGTGCGTTCTCACAACAACCTTCAAACTGGAGTCTGGGTAACTC
TAGGCTCTGAGGTCTTTGATGTCACAAAATTTGTGGACCTGCATCCAGGAGGACAATCAAAACT
GATGCTAGCTGCTGGAGGTCCCCTAGAACCCTTCTGGGCCCTCTATGCTGTTCACAACCAGCCC
CATGTACGTGAGTTACTGGCTGAGTATAAGATTGGGGAGCTGAACCCCGAAGATAGAATGTCCC
CTCCCTTGGAGGCCTCTGACCCTTATTCCAATGACCCTATGCGTCATCCAGCCCTGAGGATTAA
TAGCCAGCGCCCCTTTAATGCAGAGCCTCCTCCTGAACTGCTTACAGAAAGCTACATCACACCA
AACCCTATTTTCTTTACCCGGAACCATCTGCCTGTACCTAACCTGGACCCAGACACCTATCGCT
TGCATGTAGTAGGGGCACCTGGAGGTCAGTCGCTCTCTCTCTCCTTGGATGATTTGCATAAGTT
CCCCAAACATGAGGTCACTGTCACTCTGCAGTGTGCTGGTAACCGGCGCTCGGAGATGAATAAG
GTCAAGGAAGTGAAAGGTCTGGAGTGGAGAACAGGGGCCATCAGCACGGCACGCTGGGCCGGGG
CACGGCTCTGTGATGTCTTAGCCCAGGCTGGTCACCGACTCCGTGAAACCGAGGCCCATGTCTG
TTTTGAAGGACTGGATTCAGACCCCACTGGAACTGCCTATGGGGCATCCATCCCTCTGGCTCGG
GCCATGGATCCCCAAGCCGAGGTCCTCCTGGCTTATGAGATGAATGGTCAGCCTCTGCCTCGTG
ACCATGGCTTCCCCGTAAGGGTGGTGGTTCCTGGTGTGGTAGGTGCTCGCCATGTCAAGTGGTT
GGGCAGAGTGAGTGTGGAGTCAGAGGAAAGTTATAGTCACTGGCAGAGGCGGGATTACAAAGGC
TTTTCTCCATCTGTGGACTGGGACACTGTAGACTTTGATCTAGCCCCATCAATTCAGGAACTAC
CCATCCAGTCAGCTATCACACAGCCTCAAGATGGGACGACTGTAGAATCAGGAGAGGTGATTAT
CAAGGGCTATGCATGGAGTGGTGGTGGTAGGGCTGTGATTCGAGTGGATGTGTCTATGGATGGT
GGACTGACCTGGCAGGAAGCTGAGCTGGAGGGAGAGGAACAGCATCCCAGGAAGGCCTGGGCTT
GGCGAATATGGCAGTTGAAAGCTCACGTGCCAGCTGAGCAGAAGGAATTGAACATCATTTGTAA
AGCGGTAGATGACAGTTACAACGTGCAGCCAGACACTGTGGCCCCAATCTGGAACCTTCGAGGC
GTGCTCAGCAATGCCTGGCACCGTGTCCACGTTCAGGTGGTTCCATGAAAGCATGGAACAGCAG
TTTGTACCCAAAGGACCCCTACACCTCTTTACCAACCCAGCCTTAATCCTCGGTGCCATAGATA
AACGTTTCCTTCCTCTACTGAGGGGAGAAAGCAGCTCTCAAGACATCACTTTCTTACCCTACCA
TACCTTTACTTCTCATGCCTCCCCTCAGGCCTTGTTTTGCATTGCTTAGATTCTTCAGATATGT
GTGTGATGTATGGAATGTGTAAAAACTGTACGTTATTTCTTTTTCTTCTTCATCATCTTGTTTT
TTTTCCCTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACC
AAACTGCCTGCCTTAGTCTCCAGAATCGGGGGATTAAAGGCATGTGCCGCCACTGCCCGTCTAC
AACTTTCAATCGCCTCTGGGATGCAAGGAGATTTCCCTCTTAGAGTGCTTTTAAAACGATTCCA
ATAAAGTGTCTGTTTAAGACTATGACTGGAA

hide sequence

RefSeq Acc Id:

XM_063264300 ⟹ XP_063120370

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	1,687,666 - 1,691,519 (-)	NCBI

RefSeq Acc Id:

XM_063264301 ⟹ XP_063120371

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	1,687,666 - 1,691,519 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_112389	(Get FASTA)	NCBI Sequence Viewer
	XP_006240864	(Get FASTA)	NCBI Sequence Viewer
	XP_006240865	(Get FASTA)	NCBI Sequence Viewer
	XP_063120370	(Get FASTA)	NCBI Sequence Viewer
	XP_063120371	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA16618	(Get FASTA)	NCBI Sequence Viewer
	AAH61991	(Get FASTA)	NCBI Sequence Viewer
	EDL84827	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000008018
	ENSRNOP00000008018.3
	ENSRNOP00000089321.1
	ENSRNOP00065016351
GenBank Protein	Q07116	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_112389 ⟸ NM_031127
- Peptide Label:	precursor
- UniProtKB:	Q6P6W0 (UniProtKB/Swiss-Prot), Q07116 (UniProtKB/Swiss-Prot), G3V6R5 (UniProtKB/TrEMBL), A6KSG5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLPRLYRSVAVGLPRAIRAKSTPLRLCIQACSSSDSLKPQHPSLTFSDDNSRTRGWKVMGTLIG LGAVLAYHDHRCRASQESPRIYSKEDVRSHNNLQTGVWVTLGSEVFDVTKFVDLHPGGQSKLML AAGGPLEPFWALYAVHNQPHVRELLAEYKIGELNPEDRMSPPLEASDPYSNDPMRHPALRINSQ RPFNAEPPPELLTESYITPNPIFFTRNHLPVPNLDPDTYRLHVVGAPGGQSLSLSLDDLHKFPK HEVTVTLQCAGNRRSEMNKVKEVKGLEWRTGAISTARWAGARLCDVLAQAGHRLRETEAHVCFE GLDSDPTGTAYGASIPLARAMDPQAEVLLAYEMNGQPLPRDHGFPVRVVVPGVVGARHVKWLGR VSVESEESYSHWQRRDYKGFSPSVDWDTVDFDLAPSIQELPIQSAITQPQDGTTVESGEVIIKG YAWSGGGRAVIRVDVSMDGGLTWQEAELEGEEQHPRKAWAWRIWQLKAHVPAEQKELNIICKAV DDSYNVQPDTVAPIWNLRGVLSNAWHRVHVQVVP hide sequence

RefSeq Acc Id:	XP_006240864 ⟸ XM_006240802
- Peptide Label:	isoform X1
- UniProtKB:	Q6P6W0 (UniProtKB/Swiss-Prot), Q07116 (UniProtKB/Swiss-Prot), G3V6R5 (UniProtKB/TrEMBL), A6KSG5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLPRLYRSVAVGLPRAIRAKSTPLRLCIQACSSSDSLKPQHPSLTFSDDNSRTRGWKVMGTLIG LGAVLAYHDHRCRASQESPRIYSKEDVRSHNNLQTGVWVTLGSEVFDVTKFVDLHPGGQSKLML AAGGPLEPFWALYAVHNQPHVRELLAEYKIGELNPEDRMSPPLEASDPYSNDPMRHPALRINSQ RPFNAEPPPELLTESYITPNPIFFTRNHLPVPNLDPDTYRLHVVGAPGGQSLSLSLDDLHKFPK HEVTVTLQCAGNRRSEMNKVKEVKGLEWRTGAISTARWAGARLCDVLAQAGHRLRETEAHVCFE GLDSDPTGTAYGASIPLARAMDPQAEVLLAYEMNGQPLPRDHGFPVRVVVPGVVGARHVKWLGR VSVESEESYSHWQRRDYKGFSPSVDWDTVDFDLAPSIQELPIQSAITQPQDGTTVESGEVIIKG YAWSGGGRAVIRVDVSMDGGLTWQEAELEGEEQHPRKAWAWRIWQLKAHVPAEQKELNIICKAV DDSYNVQPDTVAPIWNLRGVLSNAWHRVHVQVVP hide sequence

RefSeq Acc Id:	XP_006240865 ⟸ XM_006240803
- Peptide Label:	isoform X1
- UniProtKB:	Q6P6W0 (UniProtKB/Swiss-Prot), Q07116 (UniProtKB/Swiss-Prot), G3V6R5 (UniProtKB/TrEMBL), A6KSG5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLPRLYRSVAVGLPRAIRAKSTPLRLCIQACSSSDSLKPQHPSLTFSDDNSRTRGWKVMGTLIG LGAVLAYHDHRCRASQESPRIYSKEDVRSHNNLQTGVWVTLGSEVFDVTKFVDLHPGGQSKLML AAGGPLEPFWALYAVHNQPHVRELLAEYKIGELNPEDRMSPPLEASDPYSNDPMRHPALRINSQ RPFNAEPPPELLTESYITPNPIFFTRNHLPVPNLDPDTYRLHVVGAPGGQSLSLSLDDLHKFPK HEVTVTLQCAGNRRSEMNKVKEVKGLEWRTGAISTARWAGARLCDVLAQAGHRLRETEAHVCFE GLDSDPTGTAYGASIPLARAMDPQAEVLLAYEMNGQPLPRDHGFPVRVVVPGVVGARHVKWLGR VSVESEESYSHWQRRDYKGFSPSVDWDTVDFDLAPSIQELPIQSAITQPQDGTTVESGEVIIKG YAWSGGGRAVIRVDVSMDGGLTWQEAELEGEEQHPRKAWAWRIWQLKAHVPAEQKELNIICKAV DDSYNVQPDTVAPIWNLRGVLSNAWHRVHVQVVP hide sequence

RefSeq Acc Id:

ENSRNOP00000008018 ⟸ ENSRNOT00000008018

RefSeq Acc Id:

ENSRNOP00000089321 ⟸ ENSRNOT00000108072

RefSeq Acc Id:	XP_063120371 ⟸ XM_063264301
- Peptide Label:	isoform X1
- UniProtKB:	A6KSG5 (UniProtKB/TrEMBL), G3V6R5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120370 ⟸ XM_063264300
- Peptide Label:	isoform X1
- UniProtKB:	A6KSG5 (UniProtKB/TrEMBL), G3V6R5 (UniProtKB/TrEMBL)

Protein Domains

Cytochrome b5 heme-binding

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q07116-F1-model_v2	AlphaFold	Q07116	1-546	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694946

Promoter ID:

EPDNEW_R5471

Type:

multiple initiation site

Name:

Suox_1

Description:

sulfite oxidase

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	3,102,103 - 3,102,163	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:619994	AgrOrtholog
BioCyc Gene	G2FUF-35341	BioCyc
BioCyc Pathway	PWY-5326 [sulfite oxidation IV (sulfite oxidase)]	BioCyc
	PWY-7927 [sulfide oxidation IV (mitochondria)]	BioCyc
BioCyc Pathway Image	PWY-5326	BioCyc
	PWY-7927	BioCyc
Ensembl Genes	ENSRNOG00000005987	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOG00065012947	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000008018.6	UniProtKB/TrEMBL
	ENSRNOT00000108072.1	UniProtKB/TrEMBL
	ENSRNOT00065021187	UniProtKB/Swiss-Prot
Gene3D-CATH	2.60.40.650	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	3.10.120.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	3.90.420.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:5599452	IMAGE-MGC_LOAD
InterPro	Cyt_B5-like_heme/steroid-bd	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Cyt_B5-like_heme/steroid_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Cyt_B5_heme-BS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ig_E-set	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	MoCF_OxRdtse_dimer	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Mopterin_OxRdtase_euk	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	OxRdtase_Mopterin-bd_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	OxRdtase_Mopterin-bd_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	OxRdtase_Mopterin_BS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:81805	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:72410	IMAGE-MGC_LOAD
NCBI Gene	81805	ENTREZGENE
PANTHER	SULFITE OXIDASE, MITOCHONDRIAL	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SULFITE REDUCTASE	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Cyt-b5	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Mo-co_dimer	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Oxidored_molyb	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Suox	PhenoGen
PRINTS	CYTOCHROMEB5	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	EUMOPTERIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	CYTOCHROME_B5_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	CYTOCHROME_B5_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	MOLYBDOPTERIN_EUK	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000005987	RatGTEx
	ENSRNOG00065012947	RatGTEx
SMART	Cyt-b5	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF55856	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF56524	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF81296	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I6ABF6_RAT	UniProtKB/TrEMBL
	A6KSG5	ENTREZGENE, UniProtKB/TrEMBL
	G3V6R5	ENTREZGENE, UniProtKB/TrEMBL
	Q07116	ENTREZGENE
	Q6P6W0	ENTREZGENE
	SUOX_RAT	UniProtKB/Swiss-Prot
UniProt Secondary	Q6P6W0	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-02-26	Suox	sulfite oxidase			Symbol and Name status set to approved	625702	APPROVED
2002-08-07	Suox	sulfite oxidase			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_cellular_localization	may be localized to the mitochondrion	634113

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)

BioCyc Pathways

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)

BioCyc Pathways