Rps7 (ribosomal protein S7) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Rps7 (ribosomal protein S7) Rattus norvegicus
Analyze
Symbol: Rps7
Name: ribosomal protein S7
RGD ID: 61907
Description: Enables poly(U) RNA binding activity. Predicted to be involved in several processes, including positive regulation of intrinsic apoptotic signaling pathway by p53 class mediator; protein stabilization; and ribosome biogenesis. Predicted to act upstream of or within neural crest cell differentiation and neural tube closure. Part of cytosolic small ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 8. Orthologous to human RPS7 (ribosomal protein S7); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 17beta-hydroxy-5alpha-androstan-3-one; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 40S ribosomal protein S7; LOC497813; MGC188796; MGC72770; S8; similar to ribosomal protein S7; small ribosomal subunit protein eS7
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Rps7-ps20   Rps7-ps23   Rps7-ps24  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8650,994,581 - 50,999,447 (-)NCBIGRCr8
mRatBN7.2645,266,200 - 45,271,064 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl645,223,980 - 45,271,145 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx645,557,256 - 45,562,127 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0645,872,126 - 45,876,997 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0645,308,996 - 45,313,867 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0647,899,525 - 47,904,389 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl647,899,525 - 47,904,437 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0656,601,561 - 56,606,425 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4646,511,961 - 46,516,825 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera644,489,474 - 44,494,338 (-)NCBICelera
Cytogenetic Map6q16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-nitrofluorene  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (EXP)
acetamide  (EXP)
acrolein  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (EXP)
alpha-pinene  (ISO)
ammonium chloride  (EXP)
antimycin A  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenic trichloride  (ISO)
arsenite(3-)  (ISO)
azoxystrobin  (ISO)
benzo[a]pyrene  (ISO)
beryllium sulfate  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
cannabidiol  (ISO)
chloropicrin  (ISO)
choline  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
CU-O LINKAGE  (ISO)
cylindrospermopsin  (ISO)
deguelin  (ISO)
dicrotophos  (ISO)
diethylstilbestrol  (EXP)
dioxygen  (ISO)
disodium selenite  (ISO)
disulfiram  (ISO)
elemental selenium  (ISO)
epoxiconazole  (ISO)
fenbuconazole  (ISO)
fenpyroximate  (ISO)
fenthion  (ISO)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
indole-3-methanol  (EXP)
ivermectin  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
melatonin  (ISO)
Mesaconitine  (EXP)
methapyrilene  (EXP)
miconazole  (ISO)
N-hydroxy-PhIP  (EXP)
N-nitrosodimethylamine  (EXP)
nickel atom  (ISO)
nitric oxide  (ISO)
ozone  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
PhIP  (EXP)
picoxystrobin  (ISO)
piperonyl butoxide  (EXP)
pirinixic acid  (EXP)
propiconazole  (ISO)
pyrimidifen  (ISO)
rotenone  (ISO)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
stigmasterol  (ISO)
sunitinib  (ISO)
tetrachloromethane  (EXP)
tungsten  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. The isolation of eukaryotic ribosomal proteins. The purification and characterization of the 40 S ribosomal subunit proteins S2, S3, S4, S5, S6, S7, S8, S9, S13, S23/S24, S27, and S28. Collatz E, etal., J Biol Chem. 1976 Aug 10;251(15):4666-72.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Sequence of a cDNA encoding rat ribosomal protein homologous to Xenopus laevis ribosomal protein S8. Guillier M and Leibovitch S, Nucleic Acids Res 1991 Mar 25;19(6):1339.
5. Electron microscopic investigations on the location of rat liver ribosomal proteins S3a, S5, S6, S7 and S9 by means of antibody labeling. Lutsch G, etal., Biomed Biochim Acta. 1983;42(6):705-23.
6. Immunoelectron microscopic studies on the location of ribosomal proteins on the surface of the 40S ribosomal subunit from rat liver. Lutsch G, etal., Eur J Cell Biol. 1990 Feb;51(1):140-50.
7. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
8. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
9. Functional dichotomy of ribosomal proteins during the synthesis of mammalian 40S ribosomal subunits. O'Donohue MF, etal., J Cell Biol. 2010 Sep 6;190(5):853-66. doi: 10.1083/jcb.201005117.
10. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
11. GOA pipeline RGD automated data pipeline
12. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
13. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
14. Comprehensive gene review and curation RGD comprehensive gene curation
15. The primary structure of rat ribosomal protein S7. Suzuki K, etal., FEBS Lett 1990 Oct 1;271(1-2):51-3.
16. Proteins of small subunits of rat liver ribosomes that interact with poly(U). II. Cross-links between poly(U) and ribosomal proteins in 40 S subunits induced by UV irradiation. Terao K and Ogata K, J Biochem. 1979 Sep;86(3):605-17.
Additional References at PubMed
PMID:8706699   PMID:8889548   PMID:9687515   PMID:11823430   PMID:12477932   PMID:14681019   PMID:15384171   PMID:15489334   PMID:15883184   PMID:16213212   PMID:16452087   PMID:16854843  
PMID:17310983   PMID:18697920   PMID:18809582   PMID:19946888   PMID:20873783   PMID:21423176   PMID:21630459   PMID:22658674   PMID:22681889   PMID:23376485   PMID:23979707   PMID:26316108  
PMID:29476059   PMID:30053369   PMID:35352799  


Genomics

Comparative Map Data
Rps7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8650,994,581 - 50,999,447 (-)NCBIGRCr8
mRatBN7.2645,266,200 - 45,271,064 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl645,223,980 - 45,271,145 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx645,557,256 - 45,562,127 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0645,872,126 - 45,876,997 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0645,308,996 - 45,313,867 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0647,899,525 - 47,904,389 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl647,899,525 - 47,904,437 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0656,601,561 - 56,606,425 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4646,511,961 - 46,516,825 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera644,489,474 - 44,494,338 (-)NCBICelera
Cytogenetic Map6q16NCBI
RPS7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3823,575,260 - 3,580,920 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl23,575,260 - 3,580,920 (+)EnsemblGRCh38hg38GRCh38
GRCh3723,622,850 - 3,628,510 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3623,600,728 - 3,606,384 (+)NCBINCBI36Build 36hg18NCBI36
Build 3423,116,236 - 3,121,877NCBI
Celera23,631,842 - 3,637,496 (+)NCBICelera
Cytogenetic Map2p25.3NCBI
HuRef23,564,506 - 3,570,162 (+)NCBIHuRef
CHM1_123,552,270 - 3,557,926 (+)NCBICHM1_1
T2T-CHM13v2.023,597,803 - 3,603,463 (+)NCBIT2T-CHM13v2.0
Rps7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391228,680,846 - 28,685,952 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1228,680,853 - 28,685,952 (-)EnsemblGRCm39 Ensembl
GRCm381228,630,847 - 28,635,953 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1228,630,854 - 28,635,953 (-)EnsemblGRCm38mm10GRCm38
MGSCv371229,315,712 - 29,320,818 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361229,217,366 - 29,222,193 (-)NCBIMGSCv36mm8
Celera1230,121,287 - 30,126,412 (-)NCBICelera
Cytogenetic Map12A2NCBI
cM Map1210.99NCBI
Rps7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554873,792,870 - 3,798,153 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554873,793,168 - 3,798,007 (-)NCBIChiLan1.0ChiLan1.0
RPS7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212122,922,104 - 122,928,775 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A122,926,086 - 122,931,819 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A3,593,350 - 3,599,106 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A3,511,821 - 3,517,785 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A3,512,079 - 3,517,785 (+)Ensemblpanpan1.1panPan2
RPS7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1172,139,011 - 2,143,160 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl172,138,779 - 2,143,178 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha172,124,668 - 2,129,038 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0172,232,786 - 2,237,210 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl172,233,079 - 2,237,228 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1172,118,040 - 2,122,418 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0172,138,823 - 2,143,188 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0172,140,682 - 2,145,067 (+)NCBIUU_Cfam_GSD_1.0
Rps7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629246,980,151 - 46,985,156 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365321,734,983 - 1,742,151 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365321,734,993 - 1,740,202 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPS7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3131,258,722 - 131,263,256 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13131,258,709 - 131,263,285 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23140,517,094 - 140,521,644 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPS7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.114104,069,825 - 104,075,669 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl14104,069,645 - 104,075,647 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660458,223,822 - 8,229,697 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rps7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248465,185,236 - 5,190,260 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248465,185,236 - 5,190,357 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rps7
22 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:26
Count of miRNA genes:22
Interacting mature miRNAs:25
Transcripts:ENSRNOT00000011333
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6172227641Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6507449754641141Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)61173566972593685Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)61173566972593685Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)61436878859368788Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
2292589Emca10Estrogen-induced mammary cancer QTL 100.048mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)61653614061536140Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)61653614071636405Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)62033877762613667Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62086642281133036Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63207442872227641Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63330954957730294Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63330954981132889Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)63443413777102317Rat
1354632Scl29Serum cholesterol level QTL 293.74blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)63509870971636405Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)63523041780230417Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)63569161857730540Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)63878398983783989Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)63878398983783989Rat

Markers in Region
UniSTS:488324  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2369,517,643 - 69,518,316 (+)MAPPERmRatBN7.2
Rnor_6.0371,837,227 - 71,837,899NCBIRnor6.0
Rnor_5.0378,358,296 - 78,358,968UniSTSRnor5.0
RGSC_v3.4367,638,872 - 67,639,544UniSTSRGSC3.4
Celera368,874,596 - 68,875,268UniSTS
Cytogenetic Map3q24UniSTS
Cytogenetic Map6q16UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 2 4 4 3 4 8 3
Medium 1 43 53 37 16 37 8 11 74 35 33 8 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_031570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA819435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC125638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC168722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X56846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000011290   ⟹   ENSRNOP00000011290
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl645,223,980 - 45,266,629 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000011333   ⟹   ENSRNOP00000011333
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl645,223,980 - 45,271,145 (-)Ensembl
Rnor_6.0 Ensembl647,899,558 - 47,904,163 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000092848
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl647,902,445 - 47,904,357 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000092867   ⟹   ENSRNOP00000075995
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl645,251,049 - 45,271,145 (-)Ensembl
Rnor_6.0 Ensembl647,899,525 - 47,904,437 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000093021
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl647,900,056 - 47,904,172 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000097352   ⟹   ENSRNOP00000090005
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl645,223,980 - 45,266,629 (-)Ensembl
RefSeq Acc Id: NM_031570   ⟹   NP_113758
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8650,994,581 - 50,999,445 (-)NCBI
mRatBN7.2645,266,200 - 45,271,064 (-)NCBI
Rnor_6.0647,899,525 - 47,904,389 (-)NCBI
Rnor_5.0656,601,561 - 56,606,425 (-)NCBI
RGSC_v3.4646,511,961 - 46,516,825 (-)RGD
Celera644,489,474 - 44,494,338 (-)RGD
Sequence:
RefSeq Acc Id: XM_063261576   ⟹   XP_063117646
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8650,994,581 - 50,999,447 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_113758   ⟸   NM_031570
- UniProtKB: P62083 (UniProtKB/Swiss-Prot),   B5DEL9 (UniProtKB/TrEMBL),   A0A8I6GEL5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000075995   ⟸   ENSRNOT00000092867
RefSeq Acc Id: ENSRNOP00000011333   ⟸   ENSRNOT00000011333
RefSeq Acc Id: ENSRNOP00000011290   ⟸   ENSRNOT00000011290
RefSeq Acc Id: ENSRNOP00000090005   ⟸   ENSRNOT00000097352
RefSeq Acc Id: XP_063117646   ⟸   XM_063261576
- Peptide Label: isoform X1
- UniProtKB: P62083 (UniProtKB/Swiss-Prot),   B5DEL9 (UniProtKB/TrEMBL)
Protein Domains
C-type lectin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P62083-F1-model_v2 AlphaFold P62083 1-194 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:61907 AgrOrtholog
BioCyc Gene G2FUF-37965 BioCyc
Ensembl Genes ENSRNOG00000008373 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000008551 Ensembl
  ENSRNOG00000027694 UniProtKB/TrEMBL
  ENSRNOG00055005708 UniProtKB/Swiss-Prot
  ENSRNOG00055016920 UniProtKB/Swiss-Prot
  ENSRNOG00060008885 UniProtKB/Swiss-Prot
  ENSRNOG00065010497 UniProtKB/Swiss-Prot
  ENSRNOG00065011558 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000011290.7 UniProtKB/TrEMBL
  ENSRNOT00000011333.7 UniProtKB/TrEMBL
  ENSRNOT00000011545.5 UniProtKB/TrEMBL
  ENSRNOT00000092867 ENTREZGENE
  ENSRNOT00000092867.2 UniProtKB/TrEMBL
  ENSRNOT00000097352.1 UniProtKB/TrEMBL
  ENSRNOT00055009206 UniProtKB/Swiss-Prot
  ENSRNOT00055028729 UniProtKB/Swiss-Prot
  ENSRNOT00060014890 UniProtKB/Swiss-Prot
  ENSRNOT00065017004 UniProtKB/Swiss-Prot
  ENSRNOT00065018787 UniProtKB/Swiss-Prot
Gene3D-CATH 3.10.100.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:6888098 IMAGE-MGC_LOAD
InterPro C-type_lectin-like UniProtKB/TrEMBL
  C-type_lectin-like/link_sf UniProtKB/TrEMBL
  C-type_lectin_CS UniProtKB/TrEMBL
  Collagen UniProtKB/TrEMBL
  Collectin_CTLD UniProtKB/TrEMBL
  CTDL_fold UniProtKB/TrEMBL
  Ribosomal_eS7_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S7e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:100362830 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  rno:29258 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:72770 IMAGE-MGC_LOAD
NCBI Gene 29258 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  C-TYPE LECTIN DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  LITHOSTATHINE UniProtKB/TrEMBL
  PTHR11278 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Collagen UniProtKB/TrEMBL
  Lectin_C UniProtKB/TrEMBL
  Ribosomal_S7e UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rps7 PhenoGen
PROSITE C_TYPE_LECTIN_1 UniProtKB/TrEMBL
  C_TYPE_LECTIN_2 UniProtKB/TrEMBL
  RIBOSOMAL_S7E UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000008373 RatGTEx
  ENSRNOG00000008551 RatGTEx
  ENSRNOG00000027694 RatGTEx
  ENSRNOG00055005708 RatGTEx
  ENSRNOG00055016920 RatGTEx
  ENSRNOG00060008885 RatGTEx
  ENSRNOG00065010497 RatGTEx
  ENSRNOG00065011558 RatGTEx
SMART CLECT UniProtKB/TrEMBL
Superfamily-SCOP SSF56436 UniProtKB/TrEMBL
UniProt A0A8I6ABK7_RAT UniProtKB/TrEMBL
  A0A8I6GEL5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2Q5A3_RAT UniProtKB/TrEMBL
  A0A8L2RB77_RAT UniProtKB/TrEMBL
  B5DEL9 ENTREZGENE, UniProtKB/TrEMBL
  F1LSS7_RAT UniProtKB/TrEMBL
  P62083 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary P23821 UniProtKB/Swiss-Prot
  P24818 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-04-12 Rps7  ribosomal protein S7  LOC497813  similar to ribosomal protein S7  Data merged from RGD:1583750 737654 PROVISIONAL
2006-11-19 LOC497813  similar to ribosomal protein S7      Symbol and Name status set to provisional 70820 PROVISIONAL
2002-06-10 Rps7  ribosomal protein S7      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_other there are 14-16 copies of the gene 61743
gene_protein 194 amino acids 61743