HMGB1P32 (high mobility group box 1 pseudogene 32) - Rat Genome Database

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Gene: HMGB1P32 (high mobility group box 1 pseudogene 32) Homo sapiens
Analyze
Symbol: HMGB1P32
Name: high mobility group box 1 pseudogene 32
RGD ID: 5490920
HGNC Page HGNC:39123
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: HMGB1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X98,422,135 - 98,422,742 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX98,422,138 - 98,422,809 (+)EnsemblGRCh38hg38GRCh38
GRCh37X97,677,133 - 97,677,740 (+)NCBIGRCh37GRCh37hg19GRCh37
CeleraX98,197,008 - 98,197,615 (+)NCBICelera
Cytogenetic MapXq21.33NCBI
HuRefX87,480,957 - 87,481,564 (+)NCBIHuRef
CHM1_1X97,570,343 - 97,570,950 (+)NCBICHM1_1
T2T-CHM13v2.0X96,863,936 - 96,864,543 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:12727900  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:100
Count of miRNA genes:98
Interacting mature miRNAs:99
Transcripts:ENST00000425971
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system appendage
High
Medium
Low 1 2 1 6 6 1
Below cutoff 12 4 3 2 21 1 12 4 15 14 20 10 1 4

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000425971
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX98,422,138 - 98,422,809 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC HMGB1P32 COSMIC
Ensembl Genes ENSG00000226837 Ensembl, ENTREZGENE
GTEx ENSG00000226837 GTEx
HGNC ID HGNC:39123 ENTREZGENE
Human Proteome Map HMGB1P32 Human Proteome Map
NCBI Gene 100419995 ENTREZGENE