Ankhd1 (ankyrin repeat and KH domain containing 1) - Rat Genome Database

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Gene: Ankhd1 (ankyrin repeat and KH domain containing 1) Rattus norvegicus
Analyze
Symbol: Ankhd1
Name: ankyrin repeat and KH domain containing 1
RGD ID: 4892133
Description: Predicted to enable RNA binding activity. Predicted to be located in nucleus. Orthologous to several human genes including ANKHD1 (ankyrin repeat and KH domain containing 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; buspirone.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ankyrin repeat and KH domain-containing protein 1
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81828,436,296 - 28,534,954 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1828,436,394 - 28,534,954 (+)EnsemblGRCr8
mRatBN7.21828,161,882 - 28,260,917 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1828,162,311 - 28,268,024 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1828,289,538 - 28,388,062 (+)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01829,051,622 - 29,150,153 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01828,386,864 - 28,485,391 (+)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1828,655,535 - 28,752,596 (+)NCBI
Lyon_Normotensive1828,238,762 - 28,335,817 (+)NCBI
Lyon_Hypertensive1828,253,003 - 28,350,056 (+)NCBI
F344_StmMcwi1828,295,445 - 28,394,003 (+)NCBI
Rnor_6.01829,386,906 - 29,485,611 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1829,386,809 - 29,492,718 (+)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.01829,093,401 - 29,190,685 (+)NCBIRnor_5.0Rnor_5.0rn5
Celera1827,890,421 - 27,988,091 (+)NCBICelera
Cytogenetic Map18p11NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
alpha-pinene  (ISO)
Aroclor 1254  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
buspirone  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
clobetasol  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
Cuprizon  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dorsomorphin  (ISO)
enzyme inhibitor  (ISO)
fenthion  (ISO)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
haloperidol  (ISO)
hydralazine  (ISO)
hydrogen cyanide  (ISO)
isotretinoin  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
mercury atom  (ISO)
mercury(0)  (ISO)
methapyrilene  (ISO)
methidathion  (ISO)
methylmercury chloride  (ISO)
nitrates  (ISO)
ozone  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
piperonyl butoxide  (EXP)
pirinixic acid  (ISO)
potassium cyanide  (ISO)
propiconazole  (ISO)
quercetin  (ISO)
SB 431542  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sulforaphane  (ISO)
titanium dioxide  (ISO)
troglitazone  (ISO)
trovafloxacin  (EXP)
tungsten  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)
vincristine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. The EARP Complex and Its Interactor EIPR-1 Are Required for Cargo Sorting to Dense-Core Vesicles. Topalidou I, etal., PLoS Genet. 2016 May 18;12(5):e1006074. doi: 10.1371/journal.pgen.1006074. eCollection 2016 May.
Additional References at PubMed
PMID:8889548   PMID:12477932   PMID:12947022   PMID:22658674   PMID:22681889  


Genomics

Comparative Map Data
Ankhd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81828,436,296 - 28,534,954 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1828,436,394 - 28,534,954 (+)EnsemblGRCr8
mRatBN7.21828,161,882 - 28,260,917 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1828,162,311 - 28,268,024 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1828,289,538 - 28,388,062 (+)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01829,051,622 - 29,150,153 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01828,386,864 - 28,485,391 (+)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1828,655,535 - 28,752,596 (+)NCBI
Lyon_Normotensive1828,238,762 - 28,335,817 (+)NCBI
Lyon_Hypertensive1828,253,003 - 28,350,056 (+)NCBI
F344_StmMcwi1828,295,445 - 28,394,003 (+)NCBI
Rnor_6.01829,386,906 - 29,485,611 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1829,386,809 - 29,492,718 (+)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.01829,093,401 - 29,190,685 (+)NCBIRnor_5.0Rnor_5.0rn5
Celera1827,890,421 - 27,988,091 (+)NCBICelera
Cytogenetic Map18p11NCBI
ANKHD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385140,401,833 - 140,539,849 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5140,401,660 - 140,541,168 (+)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh375139,781,418 - 139,919,434 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365139,761,613 - 139,899,625 (+)NCBIBuild 36Build 36hg18NCBI36
Celera5135,858,059 - 135,996,193 (+)NCBICelera
Cytogenetic Map5q31.3NCBI
HuRef5134,926,568 - 135,064,780 (+)NCBIHuRef
CHM1_15139,214,501 - 139,352,689 (+)NCBICHM1_1
T2T-CHM13v2.05140,927,267 - 141,065,280 (+)NCBIT2T-CHM13v2.0
Ankhd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391836,693,656 - 36,791,961 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1836,693,040 - 36,791,966 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381836,560,603 - 36,658,908 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1836,559,987 - 36,658,913 (+)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv371836,720,257 - 36,818,562 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361836,936,040 - 37,035,576 (+)NCBIMGSCv36mm8
Celera1837,010,375 - 37,107,994 (+)NCBICelera
Cytogenetic Map18B2NCBI
cM Map1819.46NCBI
ANKHD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24135,661,557 - 135,807,114 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15133,800,883 - 133,946,665 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05135,768,442 - 135,913,976 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15141,884,910 - 142,031,612 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5141,884,908 - 142,031,298 (+)EnsemblPanPan1.1 EnsemblpanPan2panpan1.1
ANKHD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1235,618,287 - 35,742,050 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl235,618,282 - 35,744,734 (+)EnsemblCanFam3.1 EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha232,656,633 - 32,775,478 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0236,073,948 - 36,191,878 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl236,073,943 - 36,191,878 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1233,125,806 - 33,244,752 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0233,993,175 - 34,112,289 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0234,746,141 - 34,864,980 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ankhd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap11120,702,364 - 120,826,382 (+)NCBImIctTri1.hap1
HiC_Itri_2NW_024407213152,102,365 - 152,225,546 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365319,385,924 - 9,509,472 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365319,385,958 - 9,509,406 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANKHD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2142,166,167 - 142,298,097 (+)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.12142,166,314 - 142,298,097 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22148,109,886 - 148,241,940 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ANKHD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap12341,632,342 - 41,768,893 (-)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_02366603434,690,864 - 34,828,588 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.12343,050,686 - 43,193,562 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2343,050,607 - 43,181,368 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM

Variants

.
Variants in Ankhd1
803 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:222
Count of miRNA genes:165
Interacting mature miRNAs:185
Transcripts:ENSRNOT00000024825
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182507112683910656Rat
2301409Cm70Cardiac mass QTL 700.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)18706572852065728Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)182201556261600538Rat
1331735Rf44Renal function QTL 442.981urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)181564228031610627Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181221668431644508Rat
2301413Bp318Blood pressure QTL 3180.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182682218671822186Rat
12904716Am21Aortic mass QTL 210.005aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)18706572852065728Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182349405785487725Rat
12904714Cm131Cardiac mass QTL 1310.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)18706572852065728Rat
12904715Cm132Cardiac mass QTL 1320.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)18706572852065728Rat
6903345Bp349Blood pressure QTL 3493.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
12904668Bw188Body weight QTL 1880.03body mass (VT:0001259)body weight (CMO:0000012)182682218671822186Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181522610142690662Rat
12904669Cm125Cardiac mass QTL 1250.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)182682218671822186Rat
6903347Bp350Blood pressure QTL 3504.4arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18131610627Rat
12904670Cm126Cardiac mass QTL 1260.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)182682218671822186Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18546045542690191Rat
6903349Bp351Blood pressure QTL 3513.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
631509Sald2Serum aldosterone level QTL 22.9blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)182641582171415821Rat
6903351Bp352Blood pressure QTL 3523.3arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
12904677Kidm72Kidney mass QTL 720.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)182682218671822186Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18131610627Rat
12904673Cm127Cardiac mass QTL 1270.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)182682218671822186Rat
12904675Am19Aortic mass QTL 190.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)182682218671822186Rat
631264Scl22Serum cholesterol level QTL 226.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)181221668431644508Rat
1331775Bp235Blood pressure QTL 2353.201arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181564228031610627Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18144930869Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181955353285493247Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181206648257066482Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181206648285493247Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18381190230809809Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134566578Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18448264849482648Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18154490981Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181206648285493247Rat
11565454Kidm59Kidney mass QTL 590.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)18706572852065728Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181564228086134022Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134566578Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)18430735449307354Rat

Markers in Region
UniSTS:237784  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21828,178,565 - 28,178,993 (+)MAPPERmRatBN7.2
Rnor_6.01829,403,265 - 29,403,692NCBIRnor6.0
Rnor_5.01829,108,341 - 29,108,768UniSTSRnor5.0
RGSC_v3.41829,216,051 - 29,216,478UniSTSRGSC3.4
Celera1827,905,814 - 27,906,241UniSTS
Cytogenetic Map18p11UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
277 156 730 1591 4058 1011 1727 132 874 491 856 156 5392 2592 449 3971 38 1393 740 908 160 158

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001204053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001415723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC097756 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC083884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC167100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF566015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ190564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB578806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB610048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB704953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF113119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO405927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM036500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ086998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000120936   ⟹   ENSRNOP00000098519
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1828,436,394 - 28,534,954 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000120937   ⟹   ENSRNOP00000098520
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1828,436,394 - 28,534,954 (+)Ensembl
RefSeq Acc Id: NM_001204053   ⟹   NP_001190982
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81828,436,394 - 28,534,954 (+)NCBI
mRatBN7.21828,162,343 - 28,260,917 (+)NCBI
Dahl_SR_JrHsd1828,655,535 - 28,752,596 (+)NCBI
Lyon_Normotensive1828,238,762 - 28,335,817 (+)NCBI
Lyon_Hypertensive1828,253,003 - 28,350,056 (+)NCBI
F344_StmMcwi1828,295,445 - 28,394,003 (+)NCBI
Rnor_6.01829,386,906 - 29,485,611 (+)NCBI
Rnor_5.01829,093,401 - 29,190,685 (+)NCBI
Celera1827,890,421 - 27,988,091 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001415723   ⟹   NP_001402652
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81828,436,394 - 28,534,954 (+)NCBI
mRatBN7.21828,162,343 - 28,260,917 (+)NCBI
Dahl_SR_JrHsd1828,655,535 - 28,752,596 (+)NCBI
Lyon_Normotensive1828,238,762 - 28,335,817 (+)NCBI
Lyon_Hypertensive1828,253,003 - 28,350,056 (+)NCBI
F344_StmMcwi1828,295,445 - 28,394,003 (+)NCBI
RefSeq Acc Id: XM_063277050   ⟹   XP_063133120
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81828,436,299 - 28,505,898 (+)NCBI
RefSeq Acc Id: XM_063277051   ⟹   XP_063133121
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81828,436,296 - 28,505,898 (+)NCBI
RefSeq Acc Id: NP_001190982   ⟸   NM_001204053
- Peptide Label: isoform 1
- UniProtKB: A0ABK0LAD1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001402652   ⟸   NM_001415723
- Peptide Label: isoform 2
- UniProtKB: A0ABK0LAD1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133121   ⟸   XM_063277051
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063133120   ⟸   XM_063277050
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000098519   ⟸   ENSRNOT00000120936
Ensembl Acc Id: ENSRNOP00000098520   ⟸   ENSRNOT00000120937
Protein Domains
K Homology

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K916-F1-model_v2 AlphaFold A0A0G2K916 1-2615 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700737
Promoter ID:EPDNEW_R11245
Type:multiple initiation site
Name:Eif4ebp3_1
Description:eukaryotic translation initiation factor 4E binding protein 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R11246  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01829,386,865 - 29,386,925EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:4892133 AgrOrtholog
BioCyc Gene G2FUF-7873 BioCyc
Ensembl Genes ENSRNOG00000030247 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000071292 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000032316.6 UniProtKB/TrEMBL
  ENSRNOT00000120936 ENTREZGENE
  ENSRNOT00000120936.2 UniProtKB/TrEMBL
  ENSRNOT00000120937 ENTREZGENE
  ENSRNOT00000120937.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1370.10 UniProtKB/TrEMBL
  Ankyrin repeat-containing domain UniProtKB/TrEMBL
InterPro Ankyrin-KH/SAM_domain UniProtKB/TrEMBL
  Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  EIF4EBP UniProtKB/TrEMBL
  KH-I_ANKHD1 UniProtKB/TrEMBL
  KH_dom UniProtKB/TrEMBL
  KH_dom_type_1 UniProtKB/TrEMBL
  KH_dom_type_1_sf UniProtKB/TrEMBL
KEGG Report rno:100365872 UniProtKB/TrEMBL
  rno:100529260 UniProtKB/TrEMBL
NCBI Gene 100529260 ENTREZGENE
PANTHER ANKYRIN REPEAT AND KH DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  EUKARYOTIC TRANSLATION INITIATION FACTOR 4E-BINDING PROTEIN UniProtKB/TrEMBL
  EUKARYOTIC TRANSLATION INITIATION FACTOR 4E-BINDING PROTEIN 3 UniProtKB/TrEMBL
  MASK PROTEIN UniProtKB/TrEMBL
Pfam Ank UniProtKB/TrEMBL
  Ank_2 UniProtKB/TrEMBL
  eIF_4EBP UniProtKB/TrEMBL
  KH_1 UniProtKB/TrEMBL
PhenoGen Ankhd1 PhenoGen
PRINTS ANKYRIN UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
  KH_TYPE_1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000030247 RatGTEx
  ENSRNOG00000071292 RatGTEx
SMART ANK UniProtKB/TrEMBL
  SM00322 UniProtKB/TrEMBL
Superfamily-SCOP Ankyrin repeat UniProtKB/TrEMBL
  SSF54791 UniProtKB/TrEMBL
UniProt A0ABK0L3H4_RAT UniProtKB/TrEMBL
  A0ABK0LAD1 ENTREZGENE, UniProtKB/TrEMBL
  D4AEG8_RAT UniProtKB/TrEMBL
  Q5XI12_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-02-08 Ankhd1  ankyrin repeat and KH domain containing 1      Symbol and Name status set to provisional 70820 PROVISIONAL