Mirlet7f-1 (microRNA let7f-1) - Rat Genome Database

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Gene: Mirlet7f-1 (microRNA let7f-1) Rattus norvegicus
Analyze
Symbol: Mirlet7f-1 (Ensembl: Mirlet7f-1os)
Name: microRNA let7f-1 (Ensembl:microRNA let7f-1, opposite strand)
RGD ID: 4888607
Description: Predicted to enable mRNA base-pairing translational repressor activity. Predicted to be involved in negative regulation of gene expression; negative regulation of signal transduction; and positive regulation of cell migration involved in sprouting angiogenesis. Predicted to act upstream of or within several processes, including BMP signaling pathway; cellular senescence; and long-term synaptic potentiation. Predicted to be located in extracellular exosome. Predicted to be part of RISC complex; INTERACTS WITH 2,5-hexanedione; hexanal; 2,3,7,8-tetrachlorodibenzodioxine (ortholog).
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: microRNA 3596d; microRNA let-7f-1; microRNA mir-3596d; Mir3596d; Mirlet7f1; rno-mir-3596d
RGD Orthologs
Human
Mouse
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81716,320,497 - 16,320,593 (-)NCBIGRCr8
mRatBN7.21716,114,130 - 16,114,226 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1716,114,130 - 16,114,226 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1715,994,053 - 15,994,149 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01717,599,038 - 17,599,134 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01715,920,852 - 15,920,948 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01716,418,217 - 16,418,313 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1716,418,217 - 16,418,313 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01718,474,330 - 18,474,426 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1715,840,187 - 15,840,283 (-)NCBICelera
Cytogenetic Map17p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16381832   PMID:19520079   PMID:20403161   PMID:20548288   PMID:23185045   PMID:25751060   PMID:25858512  


Genomics

Comparative Map Data
Mirlet7f-1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81716,320,497 - 16,320,593 (-)NCBIGRCr8
mRatBN7.21716,114,130 - 16,114,226 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1716,114,130 - 16,114,226 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1715,994,053 - 15,994,149 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01717,599,038 - 17,599,134 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01715,920,852 - 15,920,948 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01716,418,217 - 16,418,313 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1716,418,217 - 16,418,313 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01718,474,330 - 18,474,426 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1715,840,187 - 15,840,283 (-)NCBICelera
Cytogenetic Map17p14NCBI
MIRLET7F1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38994,176,347 - 94,176,433 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl994,176,347 - 94,176,433 (+)EnsemblGRCh38hg38GRCh38
GRCh37996,938,629 - 96,938,715 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36995,978,449 - 95,978,535 (+)NCBINCBI36Build 36hg18NCBI36
Celera967,380,185 - 67,380,271 (+)NCBICelera
Cytogenetic Map9q22.32NCBI
HuRef966,616,308 - 66,616,394 (+)NCBIHuRef
CHM1_1997,085,474 - 97,085,560 (+)NCBICHM1_1
T2T-CHM13v2.09106,344,395 - 106,344,481 (+)NCBIT2T-CHM13v2.0
Mirlet7f-1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391348,691,305 - 48,691,393 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1348,691,305 - 48,691,393 (-)EnsemblGRCm39 Ensembl
GRCm381348,537,829 - 48,537,917 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1348,537,829 - 48,537,917 (-)EnsemblGRCm38mm10GRCm38
MGSCv371348,633,198 - 48,633,286 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1349,627,776 - 49,627,864 (-)NCBICelera
Cytogenetic Map13A5NCBI
MIRLET7F
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1197,903,931 - 97,904,008 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl197,903,919 - 97,904,028 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha198,300,189 - 98,300,266 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0198,521,205 - 98,521,282 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1198,136,615 - 98,136,692 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0197,872,320 - 97,872,397 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0198,626,775 - 98,626,852 (-)NCBIUU_Cfam_GSD_1.0
MIRLET7F-2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl343,466,027 - 43,466,133 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1343,466,034 - 43,466,130 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2344,864,800 - 44,864,896 (+)NCBISscrofa10.2Sscrofa10.2susScr3

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:2674
Count of gene targets:2090
Count of transcripts:2272
Interacting mature miRNAs:rno-miR-3596d
Prediction methods:Microtar, Miranda, Pita, Pita,Targetscan, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70184BpQTLcluster14Blood pressure QTL cluster 143.38arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)17131990913Rat
631207Niddm41Non-insulin dependent diabetes mellitus QTL 41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)17137830672Rat
2303561Bw91Body weight QTL 912body mass (VT:0001259)body weight (CMO:0000012)17886846253868462Rat
1331720Rf43Renal function QTL 432.881kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)171533061323017269Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171533061355836425Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1582199Insul5Insulin level QTL 53.40.0119blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)17920136523653323Rat
1582208Kidm32Kidney mass QTL 323.90.0018kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17920136523653323Rat
1582224Epfw4Epididymal fat weight QTL 43.50.0058epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)17920136523653323Rat
1582225Bw67Body weight QTL 676.20.0001body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1582226Bw64Body weight QTL 644.20.0017body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1582241Bw70Body weight QTL 704.60.0003body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1582245Bw73Body weight QTL 734.60.0004body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1582258Bw76Body weight QTL 764.60.0005body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1581553Pur14Proteinuria QTL 145.30.0001urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)17797996816317111Rat
2324619Coatc4Coat color QTL 40.001coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)17429913021293263Rat
2324619Coatc4Coat color QTL 40.001coat/hair pigmentation trait (VT:0010463)pigmented dorsal coat/hair area to total dorsal coat/hair area ratio (CMO:0001811)17429913021293263Rat
631499Stl1Serum triglyceride level QTL 13.6blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)17327139827389946Rat
1300123Bp194Blood pressure QTL 1942.82arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)17211514934551001Rat
1641902Colcr7Colorectal carcinoma resistance QTL 73.350.0044intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)17211514921881669Rat
2293648Bmd31Bone mineral density QTL 314.50.0001femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)17435448727028127Rat
2293664Bmd28Bone mineral density QTL 285.10.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)17435448727028127Rat
1354596Bw32Body weight QTL 324.5body mass (VT:0001259)body weight (CMO:0000012)17429913060781592Rat
1354613Kidm14Kidney mass QTL 146.2kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)17429913035837242Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17429913069599340Rat
1354640Scl32Serum cholesterol level QTL 325.4blood HDL cholesterol amount (VT:0000184)blood high density lipoprotein cholesterol level (CMO:0000052)171578159260781592Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
2300002Iddm36Insulin dependent diabetes mellitus QTL 361.98blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)17999128640540197Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
1354659Scl68Serum cholesterol level QTL 683.9blood VLDL cholesterol amount (VT:0005144)blood very low density lipoprotein cholesterol level (CMO:0000648)171578159260781592Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
1549900Iddm20Insulin dependent diabetes mellitus QTL 203.7pancreas integrity trait (VT:0010560)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)171398677321975515Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17452803849528038Rat
9590316Scort21Serum corticosterone level QTL 214.750.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17122871563Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17452803849528038Rat
10401807Kidm52Kidney mass QTL 52kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17131701463Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 7 24 8 16 8 6 6 8 7 8 8 6
Low 3 2 2 1 1 1 1 2
Below cutoff 1 1 1 1 1 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NR_037338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000053661
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1716,114,130 - 16,114,226 (-)Ensembl
Rnor_6.0 Ensembl1716,418,217 - 16,418,313 (-)Ensembl
RefSeq Acc Id: NR_037338
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81716,320,497 - 16,320,593 (-)NCBI
mRatBN7.21716,114,130 - 16,114,226 (-)NCBI
Rnor_6.01716,418,217 - 16,418,313 (-)NCBI
Rnor_5.01718,474,330 - 18,474,426 (-)NCBI
Celera1715,840,187 - 15,840,283 (-)NCBI
Sequence:
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-9967 BioCyc
Ensembl Genes ENSRNOG00000035538 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000053661 ENTREZGENE
miRBase MI0015418 ENTREZGENE
NCBI Gene 100526574 ENTREZGENE
PhenoGen Mirlet7f-1 PhenoGen
RatGTEx ENSRNOG00000035538 RatGTEx
RNAcentral URS000075DF16 RNACentral
  URS000075EC0D RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-11-18 Mirlet7f-1  microRNA let7f-1  Mirlet7f1  microRNA let-7f-1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-04-22 Mirlet7f1  microRNA let-7f-1  Mir3596d  microRNA 3596d  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-02-25 Mir3596d  microRNA 3596d  Mir3596d  microRNA mir-3596d  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-11-23 Mir3596d  microRNA mir-3596d      Symbol and Name status set to provisional 70820 PROVISIONAL