Mir3551 (microRNA 3551) - Rat Genome Database

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Gene: Mir3551 (microRNA 3551) Rattus norvegicus
Analyze
Symbol: Mir3551
Name: microRNA 3551
RGD ID: 4888564
Description: INTERACTS WITH bisphenol A
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: rno-mir-3551
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X150,463,617 - 150,463,698 (-)NCBIGRCr8
mRatBN7.2X145,422,221 - 145,422,302 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX145,422,221 - 145,422,302 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX147,622,961 - 147,623,042 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X151,147,846 - 151,147,927 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X148,697,870 - 148,697,951 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X151,272,824 - 151,272,905 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX151,272,824 - 151,272,905 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X151,267,726 - 151,267,807 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
CeleraX141,273,710 - 141,273,791 (-)NCBICelera
Cytogenetic MapXq37NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
bisphenol A  (EXP)

References
Additional References at PubMed
PMID:16381832   PMID:20403161   PMID:35699802  


Genomics

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:9444
Count of gene targets:5724
Count of transcripts:6162
Interacting mature miRNAs:rno-miR-3551-3p, rno-miR-3551-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX100567703150256146Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X103312877148312877Rat
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X103312877148312877Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X113937816152453651Rat
634346Insul4Insulin level QTL 40blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)X126975089152453651Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

nervous system reproductive system
High
Medium
Low 1 7
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NR_037327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000072847
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX145,422,221 - 145,422,302 (-)Ensembl
Rnor_6.0 EnsemblX151,272,824 - 151,272,905 (-)Ensembl
RefSeq Acc Id: NR_037327
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X150,463,617 - 150,463,698 (-)NCBI
mRatBN7.2X145,422,221 - 145,422,302 (-)NCBI
Rnor_6.0X151,272,824 - 151,272,905 (-)NCBI
Rnor_5.0X151,267,726 - 151,267,807 (-)NCBI
CeleraX141,273,710 - 141,273,791 (-)NCBI
Sequence:
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-802 BioCyc
Ensembl Genes ENSRNOG00000048590 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000072847 ENTREZGENE
miRBase MI0015407 ENTREZGENE
NCBI Gene 100526615 ENTREZGENE
PhenoGen Mir3551 PhenoGen
RatGTEx ENSRNOG00000048590 RatGTEx
RNAcentral URS000075AF01 RNACentral
  URS000075B183 RNACentral
  URS000075B751 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-04-09 Mir3551  microRNA 3551  Mir3551  microRNA mir-3551  Name updated 61478 APPROVED
2010-11-23 Mir3551  microRNA mir-3551      Symbol and Name status set to provisional 70820 PROVISIONAL