Prkar1a-ps1 (protein kinase, cAMP dependent regulatory, type I, alpha, pseudogene 1) - Rat Genome Database

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Gene: Prkar1a-ps1 (protein kinase, cAMP dependent regulatory, type I, alpha, pseudogene 1) Rattus norvegicus
Analyze
Symbol: Prkar1a-ps1
Name: protein kinase, cAMP dependent regulatory, type I, alpha, pseudogene 1
RGD ID: 4145145
Description:
Type: pseudo
RefSeq Status: INFERRED
Previously known as: LOC100510791; protein kinase, cAMP dependent regulatory, type I, alpha pseudogene
Related Functional Gene: Prkar1a  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X146,376,571 - 146,376,825 (-)NCBIGRCr8
mRatBN7.2X141,340,329 - 141,340,583 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_UtxX143,525,741 - 143,525,995 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X147,066,716 - 147,066,970 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X144,622,392 - 144,622,646 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X146,072,827 - 146,073,081 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X146,083,916 - 146,084,170 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
CeleraX137,322,733 - 137,322,987 (-)NCBICelera
Cytogenetic MapXq36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX100567703150256146Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X103312877148312877Rat
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X103312877148312877Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X113937816152453651Rat
634346Insul4Insulin level QTL 40blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)X126975089152453651Rat

Markers in Region
RH94506  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21094,637,555 - 94,637,650 (+)MAPPERmRatBN7.2
mRatBN7.2X141,340,349 - 141,340,444 (-)MAPPERmRatBN7.2
mRatBN7.2X141,340,349 - 141,340,444 (+)MAPPERmRatBN7.2
mRatBN7.21094,637,555 - 94,637,650 (-)MAPPERmRatBN7.2
Rnor_6.01097,957,221 - 97,957,315NCBIRnor6.0
Rnor_6.0X146,072,848 - 146,072,942NCBIRnor6.0
Rnor_5.0X146,083,937 - 146,084,031UniSTSRnor5.0
Rnor_5.01097,671,689 - 97,671,783UniSTSRnor5.0
RGSC_v3.4X148,642,221 - 148,642,315UniSTSRGSC3.4
RGSC_v3.41099,107,292 - 99,107,386UniSTSRGSC3.4
Celera1093,296,016 - 93,296,110UniSTS
CeleraX137,322,754 - 137,322,848UniSTS
Cytogenetic Map10q32.1UniSTS
Cytogenetic MapXq36UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_027837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-847 BioCyc
NCBI Gene 100510791 ENTREZGENE
PhenoGen Prkar1a-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-03-23 Prkar1a-ps1  protein kinase, cAMP dependent regulatory, type I, alpha, pseudogene 1  LOC100510791  protein kinase, cAMP dependent regulatory, type I, alpha pseudogene  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-10-26 LOC100510791  protein kinase, cAMP dependent regulatory, type I, alpha pseudogene      Symbol and Name status set to provisional 70820 PROVISIONAL