SRIP2 (sorcin pseudogene 2) - Rat Genome Database

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Gene: SRIP2 (sorcin pseudogene 2) Homo sapiens
Analyze
Symbol: SRIP2
Name: sorcin pseudogene 2
RGD ID: 4110704
HGNC Page HGNC:38734
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: SRI  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X89,367,436 - 89,367,697 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX89,367,435 - 89,367,600 (-)EnsemblGRCh38hg38GRCh38
GRCh37X88,622,435 - 88,622,696 (-)NCBIGRCh37GRCh37hg19GRCh37
CeleraY2,628,353 - 2,628,584 (+)NCBICelera
Cytogenetic MapXq21.31NCBI
HuRefY4,146,068 - 4,146,299 (-)NCBIHuRef
CHM1_1X88,515,547 - 88,515,778 (-)NCBICHM1_1
T2T-CHM13v2.0X87,808,372 - 87,808,633 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:38
Count of miRNA genes:38
Interacting mature miRNAs:38
Transcripts:ENST00000428470
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system adipose tissue appendage
High
Medium 1
Low 2 2 1 4 4 1 1 11 7 2 1
Below cutoff 35 40 15 18 42 19 59 2 26 24 15 31

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000428470
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX89,367,435 - 89,367,600 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC SRIP2 COSMIC
Ensembl Genes ENSG00000224065 Ensembl
GTEx ENSG00000224065 GTEx
HGNC ID HGNC:38734 ENTREZGENE
Human Proteome Map SRIP2 Human Proteome Map
NCBI Gene 100499485 ENTREZGENE
PharmGKB PA165757405 PharmGKB