Mir24-1 (microRNA 24-1) - Rat Genome Database

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Gene: Mir24-1 (microRNA 24-1) Rattus norvegicus
Analyze
Symbol: Mir24-1
Name: microRNA 24-1
RGD ID: 2325595
Description:
Type: ncrna
RefSeq Status: PROVISIONAL
Previously known as: rno-mir-24-1
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8171,818,669 - 1,818,736 (-)NCBIGRCr8
mRatBN7.2171,812,949 - 1,813,016 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx171,831,648 - 1,831,715 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0173,374,246 - 3,374,313 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0171,829,098 - 1,829,165 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.017823,968 - 824,035 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.017816,781 - 816,848 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera17709,730 - 709,797 (+)NCBICelera
Cytogenetic Map17p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:15345052   PMID:16381832   PMID:16766679   PMID:17604727   PMID:17805466   PMID:20403161   PMID:22891046   PMID:25195515   PMID:27085480   PMID:30600184   PMID:31005375   PMID:31378912  
PMID:31533001   PMID:31539718   PMID:31994915   PMID:32271404   PMID:32413244   PMID:32413855   PMID:32672342   PMID:32728001   PMID:34062195   PMID:34342400   PMID:34440664   PMID:34932851  
PMID:37667918  


Genomics

miRNA Target Status

Confirmed Targets
Gene TargetMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Stx1arno-miR-24-3pMirtarbaseexternal_infoMicroarrayFunctional MTI (Weak)18258830
Mapk14rno-miR-24-3pMirtarbaseexternal_infoLuciferase reporter assayFunctional MTI19499150

Predicted Targets
Summary Value
Count of predictions:3153
Count of gene targets:2254
Count of transcripts:2426
Interacting mature miRNAs:rno-miR-24-1-5p, rno-miR-24-3p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590316Scort21Serum corticosterone level QTL 214.750.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17122871563Rat
10401807Kidm52Kidney mass QTL 52kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17131701463Rat
70184BpQTLcluster14Blood pressure QTL cluster 143.38arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)17131990913Rat
631207Niddm41Non-insulin dependent diabetes mellitus QTL 41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)17137830672Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat

Markers in Region
BE113529  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2171,813,609 - 1,813,797 (-)MAPPERmRatBN7.2
Rnor_6.017823,188 - 823,375NCBIRnor6.0
Rnor_5.017816,001 - 816,188UniSTSRnor5.0
RGSC_v3.4177,351,631 - 7,351,818UniSTSRGSC3.4
Celera17708,950 - 709,137UniSTS
RH 3.4 Map1710.5UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NR_031827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: NR_031827
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8171,818,669 - 1,818,736 (-)NCBI
mRatBN7.2171,812,949 - 1,813,016 (-)NCBI
Rnor_6.017823,968 - 824,035 (+)NCBI
Rnor_5.017816,781 - 816,848 (+)NCBI
Celera17709,730 - 709,797 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-10521 BioCyc
miRBase MI0000854 ENTREZGENE
NCBI Gene 100314003 ENTREZGENE
PhenoGen Mir24-1 PhenoGen
RNAcentral URS000059273E RNACentral
  URS000063243F RNACentral
  URS000075A98C RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-04-09 Mir24-1  microRNA 24-1  Mir24-1  microRNA mir-24-1  Name updated 61478 APPROVED
2010-06-02 Mir24-1  microRNA mir-24-1      Symbol and Name status set to provisional 70820 PROVISIONAL