Mir547 (microRNA 547) - Rat Genome Database

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Pathways
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Gene: Mir547 (microRNA 547) Rattus norvegicus
Analyze
Symbol: Mir547
Name: microRNA 547
RGD ID: 2325473
Description:
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: rno-mir-547
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X151,712,081 - 151,712,161 (-)NCBIGRCr8
mRatBN7.2X146,667,404 - 146,667,484 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX146,667,404 - 146,667,484 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX148,871,430 - 148,871,510 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X152,405,771 - 152,405,851 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X149,946,402 - 149,946,482 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X155,338,841 - 155,338,921 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX155,338,841 - 155,338,921 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01151,058,309 - 151,058,389 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1134,699,144 - 134,699,224 (+)NCBICelera
Cytogenetic MapXq37NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:16381832   PMID:18215311   PMID:20403161   PMID:32513089  


Genomics

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:7511
Count of gene targets:4979
Count of transcripts:5353
Interacting mature miRNAs:rno-miR-547-3p, rno-miR-547-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX100567703150256146Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X103312877148312877Rat
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X103312877148312877Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X113937816152453651Rat
634346Insul4Insulin level QTL 40blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)X126975089152453651Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

reproductive system
High
Medium 1
Low 3
Below cutoff 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NR_032763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000082589
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX146,667,404 - 146,667,484 (-)Ensembl
Rnor_6.0 EnsemblX155,338,841 - 155,338,921 (+)Ensembl
RefSeq Acc Id: NR_032763
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X151,712,081 - 151,712,161 (-)NCBI
mRatBN7.2X146,667,404 - 146,667,484 (-)NCBI
Rnor_6.0X155,338,841 - 155,338,921 (+)NCBI
Rnor_5.01151,058,309 - 151,058,389 (+)NCBI
Celera1134,699,144 - 134,699,224 (+)NCBI
Sequence:
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-753 BioCyc
Ensembl Genes ENSRNOG00000052097 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000082589 ENTREZGENE
miRBase MI0012613 ENTREZGENE
NCBI Gene 100314138 ENTREZGENE
PhenoGen Mir547 PhenoGen
RatGTEx ENSRNOG00000052097 RatGTEx
RNAcentral URS00003319FB RNACentral
  URS000075D361 RNACentral
  URS000075D3FE RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-04-09 Mir547  microRNA 547  Mir547  microRNA mir-547  Name updated 61478 APPROVED
2010-06-02 Mir547  microRNA mir-547      Symbol and Name status set to provisional 70820 PROVISIONAL