Mir711 (microRNA 711) - Rat Genome Database

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Gene: Mir711 (microRNA 711) Rattus norvegicus
Analyze
Symbol: Mir711
Name: microRNA 711
RGD ID: 2325468
Description: Predicted to be involved in several processes, including miRNA-mediated post-transcriptional gene silencing; negative regulation of cell population proliferation; and positive regulation of cell migration. Predicted to act upstream of or within response to oxygen levels and sensory perception of sound. Orthologous to human MIR711 (microRNA 711); INTERACTS WITH copper atom; copper(0); 1,2-dichloroethane (ortholog).
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: rno-mir-711
RGD Orthologs
Human
Mouse
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88118,500,462 - 118,500,529 (+)NCBIGRCr8
mRatBN7.28109,621,975 - 109,622,042 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8109,621,975 - 109,622,042 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8115,239,511 - 115,239,578 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08113,438,698 - 113,438,765 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08111,281,492 - 111,281,559 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08117,711,567 - 117,711,634 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8117,711,567 - 117,711,634 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08117,063,312 - 117,063,379 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera8108,915,709 - 108,915,776 (+)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16381832   PMID:18215311   PMID:18723672   PMID:23633075   PMID:23646144   PMID:29272024   PMID:29522763   PMID:29774773   PMID:32308692  


Genomics

Comparative Map Data
Mir711
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88118,500,462 - 118,500,529 (+)NCBIGRCr8
mRatBN7.28109,621,975 - 109,622,042 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8109,621,975 - 109,622,042 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8115,239,511 - 115,239,578 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08113,438,698 - 113,438,765 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08111,281,492 - 111,281,559 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08117,711,567 - 117,711,634 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8117,711,567 - 117,711,634 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08117,063,312 - 117,063,379 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera8108,915,709 - 108,915,776 (+)NCBICelera
Cytogenetic Map8q32NCBI
MIR711
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38348,578,902 - 48,578,977 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl348,578,902 - 48,578,977 (-)EnsemblGRCh38hg38GRCh38
GRCh37348,616,335 - 48,616,410 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera348,572,077 - 48,572,152 (-)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef348,674,663 - 48,674,738 (-)NCBIHuRef
CHM1_1348,568,645 - 48,568,720 (-)NCBICHM1_1
T2T-CHM13v2.0348,607,862 - 48,607,937 (-)NCBIT2T-CHM13v2.0
Mir711
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399108,798,990 - 108,799,071 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9108,798,990 - 108,799,071 (+)EnsemblGRCm39 Ensembl
GRCm389108,969,922 - 108,970,003 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,969,922 - 108,970,003 (+)EnsemblGRCm38mm10GRCm38
MGSCv379108,871,967 - 108,872,048 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera9108,527,862 - 108,527,943 (+)NCBICelera
Cytogenetic Map9F2NCBI
cM Map959.63NCBI

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:4783
Count of gene targets:3698
Count of transcripts:3982
Interacting mature miRNAs:rno-miR-711
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)846531639119088626Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)861290298119084929Rat
631653Bp125Blood pressure QTL 1253.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)866142385111142385Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)869349194112783834Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)870513503118219066Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)871888757116888757Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)871888757116888757Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)871888757116888757Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)871888757116888757Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)873473045118473045Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)876468691121468691Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)882460758122812818Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)889265192114019816Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)893535351123900184Rat
1358893Bp263Blood pressure QTL 2635.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
1358903Bp252Blood pressure QTL 25270.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
738014Anxrr15Anxiety related response QTL 153.60.005locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)895718998123900184Rat
2300182Bmd56Bone mineral density QTL 565.4femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)895718998123900184Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8100149864120994388Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system reproductive system
High
Medium
Low 3 1 6
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000054638
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8109,621,975 - 109,622,042 (+)Ensembl
Rnor_6.0 Ensembl8117,711,567 - 117,711,634 (+)Ensembl
RefSeq Acc Id: NR_032771
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88118,500,462 - 118,500,529 (+)NCBI
mRatBN7.28109,621,975 - 109,622,042 (+)NCBI
Rnor_6.08117,711,567 - 117,711,634 (+)NCBI
Rnor_5.08117,063,312 - 117,063,379 (+)NCBI
Celera8108,915,709 - 108,915,776 (+)NCBI
Sequence:
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2325468 AgrOrtholog
BioCyc Gene G2FUF-29101 BioCyc
Ensembl Genes ENSRNOG00000036531 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000054638 ENTREZGENE
miRBase MI0012621 ENTREZGENE
NCBI Gene 100314143 ENTREZGENE
PhenoGen Mir711 PhenoGen
RatGTEx ENSRNOG00000036531 RatGTEx
RNAcentral URS000075AB49 RNACentral
  URS000075E457 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-04-09 Mir711  microRNA 711  Mir711  microRNA mir-711  Name updated 61478 APPROVED
2010-06-02 Mir711  microRNA mir-711      Symbol and Name status set to provisional 70820 PROVISIONAL