Cxh3orf38 (similar to human chromosome 3 open reading frame 38) - Rat Genome Database

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Gene: Cxh3orf38 (similar to human chromosome 3 open reading frame 38) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Cxh3orf38 (Ensembl: LOC100362724)
Name: similar to human chromosome 3 open reading frame 38 (Ensembl:hypothetical protein LOC100362724)
RGD ID: 2324134
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: hypothetical protein LOC100361713; hypothetical protein LOC100362724; LOC100361713; LOC100362724; uncharacterized protein C3orf38 homolog
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X23,936,701 - 23,938,032 (+)NCBIGRCr8
mRatBN7.2X20,493,681 - 20,494,994 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX20,493,679 - 20,494,995 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X20,563,056 - 20,564,367 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX20,563,114 - 20,564,157 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X21,307,930 - 21,309,254 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X40,839,125 - 40,840,376 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX20,745,069 - 20,747,786 (+)NCBICelera
Cytogenetic MapXq12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Cxh3orf38
3 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:31
Count of miRNA genes:31
Interacting mature miRNAs:31
Transcripts:ENSRNOT00000015146
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X143491017Rat
634325Bw13Body weight QTL 130body mass (VT:0001259)body weight (CMO:0000012)X144797220991088Rat
70165Bp64Blood pressure QTL 645.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)X144812931706553Rat
631204Gluco15Glucose level QTL 150.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)X162371522646544Rat
1298071Edpm12Estrogen-dependent pituitary mass QTL 123.2pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)X292789847927898Rat
10755455Coatc13Coat color QTL 130coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7440600049406000Rat
631666Iddm5Insulin dependent diabetes mellitus QTL 5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X449454949494549Rat
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
71116Niddm16Non-insulin dependent diabetes mellitus QTL 167.81blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X1529780260297802Rat

Markers in Region
RH131187  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.0X21,309,037 - 21,309,219NCBIRnor5.0
Rnor_5.0X22,416,030 - 22,416,212NCBIRnor5.0
Rnor_5.0111,794,891 - 1,795,073NCBIRnor5.0
RGSC_v3.4112,100,213 - 2,100,394UniSTSRGSC3.4
RGSC_v3.4X40,840,175 - 40,840,356UniSTSRGSC3.4
Celera112,465,548 - 2,465,729UniSTS
CeleraX20,747,574 - 20,747,755UniSTS
Cytogenetic Map11p12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 2
Below cutoff 2 2 1 1 2 1 2 2 1 3 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000015146
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX20,493,679 - 20,494,995 (+)Ensembl
Rnor_6.0 EnsemblX20,563,114 - 20,564,157 (+)Ensembl
RefSeq Acc Id: XM_003752027   ⟹   XP_003752075
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X23,936,701 - 23,938,032 (+)NCBI
mRatBN7.2X20,493,681 - 20,494,994 (+)NCBI
Rnor_6.0X20,563,056 - 20,564,367 (+)NCBI
Rnor_5.0X21,307,930 - 21,309,254 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003752075 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000085014.1
  ENSRNOP00000097895
  ENSRNOP00000097895.1
Reference Protein Sequences
RefSeq Acc Id: XP_003752075   ⟸   XM_003752027
- UniProtKB: A0A8I6ATJ9 (UniProtKB/TrEMBL),   A0A8I6A2B5 (UniProtKB/TrEMBL)
- Sequence:

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-2770 BioCyc
Ensembl Genes ENSRNOG00000000720 UniProtKB/TrEMBL
  ENSRNOG00000038965 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000015146.6 UniProtKB/TrEMBL
  ENSRNOT00000097208.1 UniProtKB/TrEMBL
InterPro NTF2-like_dom_sf UniProtKB/TrEMBL
  UPF_C3orf38 UniProtKB/TrEMBL
KEGG Report rno:100362724 UniProtKB/TrEMBL
NCBI Gene 100362724 ENTREZGENE
PANTHER CHROMOSOME 3 OPEN READING FRAME 38 UniProtKB/TrEMBL
  PTHR21084 UniProtKB/TrEMBL
Pfam DUF4518 UniProtKB/TrEMBL
PhenoGen Cxh3orf38 PhenoGen
RatGTEx ENSRNOG00000000720 RatGTEx
  ENSRNOG00000038965 RatGTEx
Superfamily-SCOP SSF54427 UniProtKB/TrEMBL
UniProt A0A8I6A2B5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ATJ9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Cxh3orf38  similar to human chromosome 3 open reading frame 38  LOC100362724  hypothetical protein LOC100362724  Symbol and Name Changed 1299863 APPROVED
2021-03-09 LOC100362724  hypothetical protein LOC100362724  LOC100361713  hypothetical protein LOC100361713  Data merged from RGD:2319561 737654 PROVISIONAL
2010-05-06 LOC100362724  hypothetical protein LOC100362724      Symbol and Name status set to provisional 70820 PROVISIONAL
2010-05-05 LOC100361713  hypothetical protein LOC100361713      Symbol and Name status set to provisional 70820 PROVISIONAL