Rps7-ps23 (ribosomal protein S7, pseudogene 23) - Rat Genome Database

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Gene: Rps7-ps23 (ribosomal protein S7, pseudogene 23) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rps7-ps23
Name: ribosomal protein S7, pseudogene 23
RGD ID: 2323948
Description: Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 8. Orthologous to human RPS7 (ribosomal protein S7).
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: VALIDATED
Previously known as: 40S ribosomal protein S7; LOC100362830; ribosomal protein S7-like
RGD Orthologs
Alliance Genes
More Info homologs ...
Related Functional Gene: Rps7  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85167,643,660 - 167,644,326 (-)NCBIGRCr8
mRatBN7.25162,360,919 - 162,361,585 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5162,360,907 - 162,361,603 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.05169,021,517 - 169,022,178 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5169,021,560 - 169,022,145 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl647,899,525 - 47,904,437 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05172,581,760 - 172,582,422 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45169,076,315 - 169,076,938 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5160,595,317 - 160,595,974 (-)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Rps7-ps23
9 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3
Count of miRNA genes:3
Interacting mature miRNAs:3
Transcripts:ENSRNOT00000011545
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5132717196165560427Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5143069996166846814Rat
1354631Swd2Spike wave discharge measurement QTL 23.640.0002brain electrophysiology trait (VT:0010557)brain total spike-and-wave discharge duration (CMO:0001740)5151113452164465185Rat
631272Lanf1Left ventricular atrial natriuretic factor QTL 112heart left ventricle natriuretic peptide A amount (VT:0010596)heart left ventricle natriuretic peptide A level (CMO:0002165)5151113452166875058Rat
1549904Neuinf1Neuroinflammation QTL 130nervous system integrity trait (VT:0010566)blood T lymphocyte count (CMO:0000110)5154828214166875058Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 2 4 4 3 4 8 3
Medium 4 60 94 62 35 62 16 22 118 52 60 19 16
Low 26 16 16 16 30 18 14
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000011545
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5162,360,907 - 162,361,603 (-)Ensembl
Rnor_6.0 Ensembl5169,021,560 - 169,022,145 (-)Ensembl
RefSeq Acc Id: NR_176834
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85167,643,660 - 167,644,326 (-)NCBI
mRatBN7.25162,360,919 - 162,361,585 (-)NCBI
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P62083-F1-model_v2 AlphaFold P62083 1-194 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2323948 AgrOrtholog
BioCyc Gene G2FUF-39034 BioCyc
Ensembl Genes ENSRNOG00000008551 Ensembl
  ENSRNOG00000027694 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000011545 ENTREZGENE
NCBI Gene 100362830 ENTREZGENE
PhenoGen Rps7-ps23 PhenoGen
RatGTEx ENSRNOG00000008551 RatGTEx
  ENSRNOG00000027694 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-07-20 Rps7-ps23  ribosomal protein S7, pseudogene 23  Rps7-ps223  ribosomal protein S7, pseudogene 23  Symbol changed 629549 APPROVED
2022-07-18 Rps7-ps223  ribosomal protein S7, pseudogene 23  LOC100362830  ribosomal protein S7-like  Name and Symbol and Type changed (type changed from [protein-coding] to [pseudo]) 629549 APPROVED
2010-05-06 LOC100362830  ribosomal protein S7-like      Symbol and Name status set to provisional 70820 PROVISIONAL