Gene: LOC100362976 (hypothetical LOC100362976)
Rattus norvegicus |
| Symbol: |
LOC100362976
|
| Name: |
hypothetical LOC100362976
|
| Description: |
|
| Type: |
pseudo
|
| RefSeq Status: |
MODEL
|
| Latest Assembly: |
RGSC Genome Assembly v3.4
|
| Position: |
| Map | Chr | Position | Strand | Source |
|---|
Rat Cytogenetic Map | 11 | | | NCBI | RGSC Genome Assembly v5.0 | 11 | 30,900,766 - 30,986,579 | - | NCBI | RGSC Genome Assembly v3.4 | 11 | 27,384,170 - 27,426,505 | - | NCBI | Rat Celera Assembly | 11 | 26,602,851 - 26,680,245 | - | NCBI |
|
| Model |
|
Genomics
 Position Markers
| D11Rat76 |
| Map | Chr | Position | Strand | Source |
|---|
RGSC Genome Assembly v5.0 | 11 | 31,111,881 - 31,112,142 | | UniSTS | RGSC Genome Assembly v5.0 | 11 | 30,968,537 - 30,968,798 | | UniSTS | RGSC Genome Assembly v3.4 | 11 | 27,445,617 - 27,445,878 | | UniSTS | RGSC Genome Assembly v3.4 | 11 | 27,445,463 - 27,445,890 | | RGD | Rat Celera Assembly | 11 | 26,662,317 - 26,662,578 | | UniSTS | Genome Assembly 3.1 | 11 | 27,445,617 - 27,445,878 | | RGD | RH 3.4 | 11 | 136.6 | | RGD | RH 3.4 | 11 | 136.6 | | UniSTS | SHRSP x BN | 11 | 5.9099 | | UniSTS | SHRSP x BN | 11 | 5.9099 | | RGD |
|
| RH129657 |
| Map | Chr | Position | Strand | Source |
|---|
Rat Cytogenetic Map | X | q31 | | UniSTS | RGSC Genome Assembly v5.0 | 11 | 30,900,584 - 30,900,764 | | NCBI | RGSC Genome Assembly v5.0 | X | 76,844,738 - 76,844,918 | | NCBI | RGSC Genome Assembly v5.0 | 11 | 31,051,926 - 31,052,106 | | NCBI | RGSC Genome Assembly v3.4 | 11 | 27,383,989 - 27,384,168 | | UniSTS | RGSC Genome Assembly v3.4 | X | 93,156,233 - 93,156,412 | | UniSTS | Rat Celera Assembly | 11 | 26,602,670 - 26,602,849 | | UniSTS | Rat Celera Assembly | X | 71,491,499 - 71,491,678 | | UniSTS |
|
| BI288210 |
| Map | Chr | Position | Strand | Source |
|---|
RGSC Genome Assembly v5.0 | 11 | 31,129,582 - 31,129,734 | | UniSTS | RGSC Genome Assembly v5.0 | 11 | 30,986,222 - 30,986,374 | | UniSTS | RGSC Genome Assembly v3.4 | 11 | 27,464,012 - 27,464,164 | | UniSTS | Rat Celera Assembly | 11 | 26,679,888 - 26,680,040 | | UniSTS | RH 3.4 | 11 | 136.6 | | UniSTS |
|
| AU047867 |
| Map | Chr | Position | Strand | Source |
|---|
RGSC Genome Assembly v5.0 | 11 | 30,962,947 - 30,963,113 | | UniSTS | RGSC Genome Assembly v3.4 | 11 | 27,438,076 - 27,438,242 | | UniSTS | Rat Celera Assembly | 11 | 26,656,074 - 26,656,240 | | UniSTS |
|
QTLs in Region (RGSC Genome Assembly v3.4)
| 1598842 | Glom10 | Glomerulus QTL 10 | 3.4 | | Renal pathology | glomerular injury score | 11 | 1 | 35465693 | Rat | | 1558659 | Tescar1 | Testicular tumor resistance QTL 1 | 3.9 | | Testicular tumor resistance | | 11 | 597138 | 67931151 | Rat | | 1581565 | Pur10 | Proteinuria QTL 10 | | .0001 | Renal function | urine protein level | 11 | 8176422 | 68234781 | Rat | | 1581572 | Uae35 | Urinary albumin excretion QTL 35 | | .0001 | Renal function | urine albumin level | 11 | 8176422 | 68234781 | Rat | | 1300147 | Bp187 | Blood pressure QTL 187 | 3.67 | | Blood pressure | salt-loaded time series calculation | 11 | 9053659 | 50435443 | Rat | | 1641927 | Alcrsp10 | Alcohol response QTL 10 | | | Alcohol response | blood ethanol concentration | 11 | 9165656 | 54165656 | Rat | | 2290451 | Scl58 | Serum cholesterol level QTL 58 | 3.48 | | Lipid level | cholesterol level | 11 | 12965570 | 43157054 | Rat | | 724517 | Uae18 | Urinary albumin excretion QTL 18 | 3.7 | | Renal function | urine albumin level | 11 | 16670176 | 45232986 | Rat | | 724554 | Iddm17 | Insulin dependent diabetes mellitus QTL 17 | | .001 | Glucose level | | 11 | 19445919 | 87759784 | Rat | | 1598811 | Bp291 | Blood pressure QTL 291 | 1.9 | | Blood pressure | systolic | 11 | 20656936 | 65656936 | Rat | | 1598841 | Memor7 | Memory QTL 7 | | | Memory | navigation-spatial | 11 | 20656936 | 65656936 | Rat | | 634341 | Bw121 | Body weight QTL 121 | 3.5 | | Body fat amount | abdominal fat | 11 | 22214205 | 43156819 | Rat | |
Sequence
Nucleotide Sequences Strain Variation
Strain Sequence Variants
ACI/Eur (MCW)
|
|
| Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob) |
| Platform: |
Illumina HiSeq 2000 |
| Secondary Analysis: |
BWA v0.5.9-r16 and GATK v1.3-14 |
|
|
ACI/N (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
SOLID |
| Secondary Analysis: |
SAP42 (Developed at RNAAS) |
| Breeder: |
National Institutes of Health |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
BN-Lx (ICL)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Imperial College London (Dr Timothy Aitman) |
| Platform: |
SOLID |
| Secondary Analysis: |
BWA, GATK, Samtools |
| Breeder: |
Academy of Sciences of the Czech Republic (Dr.Michal Pravenec) |
| Grant Information: |
MC-A654-5QB00 |
|
|
BN-Lx (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) |
| Platform: |
SOLID |
| Secondary Analysis: |
SAP42 (Developed at RNAAS) |
| Breeder: |
Academy of Sciences of the Czech Republic (Dr.Michal Pravenec) |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
BN/NHsdMcwi (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
SOLID |
| Secondary Analysis: |
SAP42 (Developed at RNAAS) |
| Breeder: |
Medical College of Wisconsin |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
BN/SsN (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
SOLID |
| Secondary Analysis: |
SAP42 (Developed at RNAAS) |
| Breeder: |
National Institutes of Health |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
Buf/N (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
SOLID |
| Secondary Analysis: |
SAP42 (Developed at RNAAS) |
| Breeder: |
National Institutes of Health |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
COP/Crl (MCW & UW)
|
|
| Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob)
Univiersity of Wisconsin (Jim Shull) |
| Platform: |
Illumina HiSeq 2000 |
| Secondary Analysis: |
BWA v0.5.9-r16 and GATK v2.3-5 |
| Breeder: |
Charles River |
| Grant Information: |
NIH (CA77876) |
|
|
F344/N (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
SOLID |
| Breeder: |
National Institutes of Health |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
FHH/EurMcwi (MCW)
|
|
| Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob) |
| Platform: |
Illumina HiSeq 2000 |
| Secondary Analysis: |
BWA v0.5.9-r16 and GATK v1.3-14 |
|
|
FHH/EurMcwi (MDC)
|
|
| Sequenced By: |
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
Illumina/Solexa, Genome Analyzer II |
| Secondary Analysis: |
CASAVA Software v1.7 |
| Breeder: |
Medical College of Wisconsin |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
FHL/EurMcwi (MCW)
|
|
| Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob) |
| Platform: |
Illumina HiSeq 2000 |
| Secondary Analysis: |
BWA v0.5.9-r16 and GATK v1.3-14 |
|
|
GH/OmrMcwi (MCW)
|
|
| Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob) |
| Platform: |
Illumina HiSeq 2000 |
| Secondary Analysis: |
BWA v0.5.9-r16 and GATK v2.3-5 |
|
|
LE/Stm (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
SOLID |
| Secondary Analysis: |
SAP42 (Developed at RNAAS) |
| Breeder: |
Dr. Tadao Serikawa, Kyoto Japan. |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
M520/N (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
SOLID |
| Secondary Analysis: |
SAP42 (Developed at RNAAS) |
| Breeder: |
National Institutes of Health |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
MR/N (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
SOLID |
| Breeder: |
National Institutes of Health |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
SHR/Olalpcv (ICL)
|
|
| Sequenced By: |
Imperial College London (Dr Timothy Aitman)
University of British Columbia (Dr. Steven Jones) |
| Platform: |
Illumina Hi-seq 2000 and GAII |
| Secondary Analysis: |
BWA, GATK |
| Breeder: |
Institute of Physiology, Academy of Sciences of the Czech Republic, Prague |
| Grant Information: |
LSHG-CT-2005-019015, HEALTH-F4-2010-241504 |
|
|
SHR/Olalpcv (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Imperial College London (Dr Timothy Aitman) |
| Platform: |
Illumina |
| Secondary Analysis: |
GATK |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
SHRSP/Gcrc (MDC)
|
|
| Sequenced By: |
Max Delbruch Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
Illumina/Solexa, Genome Analyzer II |
| Secondary Analysis: |
CASAVA Software v1.7 |
| Breeder: |
University of Glasgow, Anna Dominiczak |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
SR/JrHsd (MCW)
|
|
| Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob) |
| Platform: |
Illumina HiSeq 2000 |
| Secondary Analysis: |
BWA v0.5.9-r16 and GATK v1.3-14 |
| Breeder: |
Harlan |
|
|
SS/JrHsdMcwi (MCW)
|
|
| Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob) |
| Platform: |
Illumina HiSeq 2000 |
| Secondary Analysis: |
BWA v0.5.9-r16 and GATK v1.3-14 |
| Grant Information: |
R01 HL089930 |
|
|
SS/JrHsdMcwi (MDC)
|
|
| Sequenced By: |
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
Illumina/Solexa, Genome Analyzer II |
| Secondary Analysis: |
CASAVA Software v1.7 |
| Breeder: |
Medical College of Wisconsin |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
WKY/N (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
SOLID |
| Secondary Analysis: |
SAP42 (Developed at RNAAS) |
| Breeder: |
National Institutes of Health |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
WN/N (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
SOLID |
| Secondary Analysis: |
SAP42 (Developed at RNAAS) |
| Breeder: |
National Institutes of Health |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
Additional Information
External Database Links
| Database |
Acc Id |
Source(s) |
| Entrez Gene |
100362976 |
ENTREZGENE |
Nomenclature History
| Date |
Current Symbol |
Current Name |
Previous Symbol |
Previous Name |
Description |
Reference |
Status |
| 2010-05-06 |
LOC100362976 |
hypothetical LOC100362976 |
|
|
Symbol and Name status set to provisional |
1724 |
PROVISIONAL |
|
|
| RGD Object Information |
| RGD ID: |
2323717 |
| Created: |
2010-05-06 |
| Species: |
Rattus norvegicus |
| Last Modified: |
2013-04-16 |
| Status: |
ACTIVE |
|
