Rps27-ps8 (ribosomal protein S27, pseudogene 8) - Rat Genome Database

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Gene: Rps27-ps8 (ribosomal protein S27, pseudogene 8) Rattus norvegicus
Analyze
Symbol: Rps27-ps8
Name: ribosomal protein S27, pseudogene 8
RGD ID: 2323677
Description:
Type: pseudo
RefSeq Status: INFERRED
Previously known as: 40S ribosomal protein S27-like; LOC100359517; ribosomal protein S27 like 4; ribosomal protein S27-like; Rps27l4
Related Functional Gene: Rps27  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81498,552,178 - 98,552,486 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.21494,350,804 - 94,399,082 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.014104,396,613 - 104,451,972 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.014104,130,743 - 104,136,959 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.414100,900,945 - 100,924,466 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1493,372,967 - 93,422,058 (-)NCBICelera
Cytogenetic Map14q22NCBI
JBrowse:




References
Additional References at PubMed
PMID:25002582  


Genomics

Variants

.
Variants in Rps27-ps8
1 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582201Sffal2Serum free fatty acids level QTL 240.0002blood free fatty acid amount (VT:0001553)serum free fatty acids level (CMO:0000547)1496755448100078267Rat
631213Bw60Body weight QTL604.51retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)1484164970100078267Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1459848686104848686Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1477914838104348525Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1433424686102238540Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1474255551109089856Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1462398852107398852Rat
1582250Gluco26Glucose level QTL 263.30.0009blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1477640071100078267Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1460854936105854936Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1474255551109089856Rat
4889951Bss92Bone structure and strength QTL 923.9tibia area (VT:1000281)tibia-fibula cortical bone total cross-sectional area (CMO:0001721)1486271332100078267Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1411334716100078267Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1459848686104848686Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144261625899224555Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)146592028399224555Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
7 1 1 22 35 60 37 1 29 16 17 9 9

Sequence


RefSeq Acc Id: XM_008770451   ⟹   XP_008768673
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21494,350,804 - 94,399,082 (-)NCBI
Rnor_6.014104,396,613 - 104,451,972 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-14889 BioCyc
NCBI Gene 100359517 ENTREZGENE
PhenoGen Rps27-ps8 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-11-30 Rps27-ps8  ribosomal protein S27, pseudogene 8  Rps27l4  ribosomal protein S27 like 4  Name and Symbol changed 629549 APPROVED
2023-10-16 Rps27l4  ribosomal protein S27 like 4  Rps27l2  ribosomal protein S27 like 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2023-09-19 Rps27l2  ribosomal protein S27 like 2  LOC100359517  ribosomal protein S27-like  Symbol and Name Changed 1299863 APPROVED
2010-05-06 LOC100359517  ribosomal protein S27-like      Symbol and Name status set to provisional 70820 PROVISIONAL