Rbisl1 (ribosomal biogenesis factor like 1) - Rat Genome Database

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Gene: Rbisl1 (ribosomal biogenesis factor like 1) Rattus norvegicus
Analyze
Symbol: Rbisl1
Name: ribosomal biogenesis factor like 1
RGD ID: 2323578
Description: Predicted to be involved in ribosome biogenesis.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: hypothetical LOC100363017; LOC100363017; ribosomal biogenesis factor-like
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81532,676,581 - 32,676,910 (-)NCBIGRCr8
mRatBN7.21528,706,619 - 28,706,985 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.01533,894,531 - 33,894,860 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01537,778,684 - 37,779,020 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41533,340,636 - 33,340,920 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1528,283,223 - 28,283,552 (-)NCBICelera
Cytogenetic Map15p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleolus  (IEA)

References

Genomics

Variants

.
Variants in Rbisl1
2 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15129912054Rat
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
8694361Abfw6Abdominal fat weight QTL 610.20.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)15134723002Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)151985656634924750Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)151985656646187442Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_039094060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_039094060   ⟹   XP_038949988
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81532,676,581 - 32,676,910 (-)NCBI
mRatBN7.21528,706,619 - 28,706,985 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038949988 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000090929.1
Reference Protein Sequences
RefSeq Acc Id: XP_038949988   ⟸   XM_039094060
- UniProtKB: A0A8I6API1 (UniProtKB/TrEMBL)

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-13735 BioCyc
Ensembl Genes ENSRNOG00000066516 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000095780.1 UniProtKB/TrEMBL
InterPro RBIS UniProtKB/TrEMBL
NCBI Gene 100363017 ENTREZGENE
PANTHER RIBOSOMAL BIOGENESIS FACTOR UniProtKB/TrEMBL
  RIBOSOMAL BIOGENESIS FACTOR UniProtKB/TrEMBL
Pfam DUF4665 UniProtKB/TrEMBL
PhenoGen Rbisl1 PhenoGen
RatGTEx ENSRNOG00000066516 RatGTEx
UniProt A0A8I6API1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Rbisl1  ribosomal biogenesis factor like 1  LOC100363017  hypothetical LOC100363017  Symbol and Name Changed 1299863 APPROVED
2010-05-06 LOC100363017  hypothetical LOC100363017      Symbol and Name status set to provisional 70820 PROVISIONAL