Gene-Chemical Interaction Annotations
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References
References - curated
Genomics
miRNA Target Status
Predicted Target Of
Summary Value | Count of predictions: | 21 | Count of miRNA genes: | 21 | Interacting mature miRNAs: | 21 | Transcripts: | ENSRNOT00000056239 | Prediction methods: | Miranda, Rnahybrid | Result types: | miRGate_prediction | |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
Markers in Region
BE100135 |
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Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPMLow: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 3 | 28 | 26 | 20 | 11 | 20 | 60 | 20 | 30 | 4 | |||
Low | 15 | 31 | 21 | 8 | 21 | 8 | 11 | 14 | 15 | 11 | 7 | 8 | |
Below cutoff |
Sequence
Nucleotide Sequences
RefSeq Transcripts | XM_063268203 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
GenBank Nucleotide | JAXUCZ010000009 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000056239 ⟹ ENSRNOP00000053083 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_063268203 ⟹ XP_063124273 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOP00000053083 ⟸ ENSRNOT00000056239 |
RefSeq Acc Id: | XP_063124273 ⟸ XM_063268203 |