LOC100363236 (keratin associated protein 13-like) - Rat Genome Database

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Gene: LOC100363236 (keratin associated protein 13-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC100363236
Name: keratin associated protein 13-like
RGD ID: 2323404
Description: Predicted to be located in cytosol and keratin filament.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: keratin-associated protein 13-2-like
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81141,554,749 - 41,555,520 (-)NCBIGRCr8
mRatBN7.21128,068,529 - 28,069,300 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1128,068,788 - 28,069,300 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01128,717,681 - 28,718,300 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01132,337,610 - 32,338,413 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41128,591,435 - 28,592,206 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1127,784,162 - 27,784,781 (-)NCBICelera
Cytogenetic Map11q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in LOC100363236
7 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11135331169Rat
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)111647204744285911Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000061620   ⟹   ENSRNOP00000058337
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1128,068,788 - 28,069,300 (-)Ensembl
RefSeq Acc Id: XM_003751020   ⟹   XP_003751068
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81141,554,749 - 41,555,520 (-)NCBI
mRatBN7.21128,068,529 - 28,069,300 (-)NCBI
Rnor_6.01128,717,681 - 28,718,300 (-)NCBI
Rnor_5.01132,337,610 - 32,338,413 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003751068 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000058337
  ENSRNOP00000058337.3
Reference Protein Sequences
RefSeq Acc Id: XP_003751068   ⟸   XM_003751020
- UniProtKB: D3ZK59 (UniProtKB/TrEMBL),   A6JL97 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000058337   ⟸   ENSRNOT00000061620

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-22017 BioCyc
Ensembl Genes ENSRNOG00000065419 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000061620 ENTREZGENE
  ENSRNOT00000061620.4 UniProtKB/TrEMBL
InterPro KRTAP_PMG UniProtKB/TrEMBL
KEGG Report rno:100363236 UniProtKB/TrEMBL
NCBI Gene 100363236 ENTREZGENE
Pfam PMG UniProtKB/TrEMBL
PhenoGen LOC100363236 PhenoGen
RatGTEx ENSRNOG00000065419 RatGTEx
UniProt A6JL97 ENTREZGENE, UniProtKB/TrEMBL
  D3ZK59 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-05-06 LOC100363236  keratin associated protein 13-like      Symbol and Name status set to provisional 70820 PROVISIONAL