LOC100363472 (nuclear receptor-binding factor 2-like) - Rat Genome Database

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Gene: LOC100363472 (nuclear receptor-binding factor 2-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC100363472
Name: nuclear receptor-binding factor 2-like
RGD ID: 2322973
Description: Predicted to be involved in autophagy. Predicted to be located in autophagosome; cytoplasmic vesicle; and nucleus.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: AABR07072371.1
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8149,288,591 - 9,290,533 (+)NCBIGRCr8
mRatBN7.2148,984,365 - 8,986,171 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl148,984,410 - 8,986,166 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01410,624,101 - 10,625,913 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1410,624,265 - 10,625,128 (+)NCBIRnor6.0rn6Rnor6.0
Rnor_5.01410,571,394 - 10,573,108 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41410,233,098 - 10,233,961 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera149,092,822 - 9,094,634 (+)NCBICelera
Cytogenetic Map14p22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
autophagy  (IBA,IEA)

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in LOC100363472
3 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141131407Rat
1300114Srn2Serum renin concentration QTL 23.27blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)14381307421217635Rat
1331740Bw26Body weight QTL 263.028body mass (VT:0001259)body weight (CMO:0000012)14381307430767156Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14826709053267090Rat
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
70204Niddm20Non-insulin dependent diabetes mellitus QTL 205.10.000008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)14121760616960180Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)14381307418274691Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)14381307418274691Rat
71115Niddm15Non-insulin dependent diabetes mellitus QTL 154.8blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14121760611030812Rat
619619Rf4Renal disease susceptibility QTL 44.10.002urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14132754612Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14826709053267090Rat
2300159Bmd61Bone mineral density QTL 615.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
724541Niddm53Non-insulin dependent diabetes mellitus QTL 530.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1438130749088978Rat
2300183Bmd60Bone mineral density QTL 605.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
70195Mcs8Mammary carcinoma susceptibility QTL 84.28mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)14381307424531477Rat


Expression


Sequence


RefSeq Acc Id: ENSRNOT00000002990   ⟹   ENSRNOP00000080869
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl148,984,410 - 8,986,166 (+)Ensembl
RefSeq Acc Id: XM_002728074   ⟹   XP_002728120
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,288,591 - 9,290,533 (+)NCBI
mRatBN7.2148,984,365 - 8,986,171 (+)NCBI
Rnor_6.01410,624,102 - 10,625,913 (+)NCBI
Rnor_5.01410,571,394 - 10,573,108 (+)NCBI
RGSC_v3.41410,233,098 - 10,233,961 (+)RGD
Sequence:
RefSeq Acc Id: XM_063273737   ⟹   XP_063129807
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8149,288,619 - 9,290,533 (+)NCBI
Protein Sequences
Protein RefSeqs XP_002728120 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129807 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000080869
  ENSRNOP00000080869.1
RefSeq Acc Id: XP_002728120   ⟸   XM_002728074
- Peptide Label: isoform X1
- UniProtKB: Q9QYK3 (UniProtKB/Swiss-Prot),   A0A8I5ZRU1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000080869   ⟸   ENSRNOT00000002990
RefSeq Acc Id: XP_063129807   ⟸   XM_063273737
- Peptide Label: isoform X2
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-16409 BioCyc
Ensembl Genes ENSRNOG00000002200 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000002990.4 UniProtKB/TrEMBL
Gene3D-CATH Phosphotransferase system, lactose/cellobiose-type IIA subunit UniProtKB/TrEMBL
InterPro NRBF2 UniProtKB/TrEMBL
  NRBF2_C UniProtKB/TrEMBL
  NRBF2_MIT UniProtKB/TrEMBL
KEGG Report rno:100363472 UniProtKB/TrEMBL
NCBI Gene 100363472 ENTREZGENE
PANTHER NUCLEAR RECEPTOR-BINDING FACTOR 2 UniProtKB/TrEMBL
  PTHR14964 UniProtKB/TrEMBL
Pfam NRBF2 UniProtKB/TrEMBL
  NRBF2_MIT UniProtKB/TrEMBL
PhenoGen LOC100363472 PhenoGen
RatGTEx ENSRNOG00000002200 RatGTEx
Superfamily-SCOP MIT domain-like UniProtKB/TrEMBL
UniProt A0A8I5ZRU1 ENTREZGENE, UniProtKB/TrEMBL
  Q9QYK3 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC100363472  nuclear receptor-binding factor 2-like  AABR07072371.1    Data merged from RGD:15003236 737654 PROVISIONAL
2019-11-08 AABR07072371.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2010-05-06 LOC100363472  nuclear receptor-binding factor 2-like      Symbol and Name status set to provisional 70820 PROVISIONAL