Evi5 (ecotropic viral integration site 5) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Evi5 (ecotropic viral integration site 5) Rattus norvegicus
Analyze
Symbol: Evi5
Name: ecotropic viral integration site 5
RGD ID: 2322879
Description: Predicted to enable GTPase activator activity and small GTPase binding activity. Predicted to be involved in retrograde transport, endosome to Golgi. Predicted to be located in cytosol. Orthologous to human EVI5 (ecotropic viral integration site 5); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ecotropic viral integration site 5 protein homolog; LOC100360066; rCG57228-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8142,020,524 - 2,166,593 (+)NCBIGRCr8
mRatBN7.2141,875,601 - 2,021,678 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl141,875,647 - 2,021,678 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx141,754,513 - 1,900,160 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0143,056,293 - 3,201,940 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0141,752,979 - 1,898,629 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0142,892,738 - 3,038,237 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl142,892,753 - 3,038,237 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0142,892,968 - 3,039,180 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4142,461,189 - 2,575,313 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera141,895,442 - 2,040,561 (+)NCBICelera
Cytogenetic Map14p22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:17562788   PMID:17646400  


Genomics

Comparative Map Data
Evi5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8142,020,524 - 2,166,593 (+)NCBIGRCr8
mRatBN7.2141,875,601 - 2,021,678 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl141,875,647 - 2,021,678 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx141,754,513 - 1,900,160 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0143,056,293 - 3,201,940 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0141,752,979 - 1,898,629 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0142,892,738 - 3,038,237 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl142,892,753 - 3,038,237 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0142,892,968 - 3,039,180 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4142,461,189 - 2,575,313 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera141,895,442 - 2,040,561 (+)NCBICelera
Cytogenetic Map14p22NCBI
EVI5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38192,508,696 - 92,792,410 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl192,508,696 - 92,792,404 (-)EnsemblGRCh38hg38GRCh38
GRCh37192,974,253 - 93,257,967 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36192,746,841 - 93,030,549 (-)NCBINCBI36Build 36hg18NCBI36
Build 34192,686,275 - 92,969,982NCBI
Celera191,227,114 - 91,511,542 (-)NCBICelera
Cytogenetic Map1p22.1NCBI
HuRef191,095,636 - 91,379,079 (-)NCBIHuRef
CHM1_1193,089,070 - 93,372,811 (-)NCBICHM1_1
T2T-CHM13v2.0192,353,585 - 92,637,609 (-)NCBIT2T-CHM13v2.0
Evi5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395107,892,661 - 108,022,973 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5107,892,661 - 108,022,973 (-)EnsemblGRCm39 Ensembl
GRCm385107,744,795 - 107,875,107 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5107,744,795 - 107,875,107 (-)EnsemblGRCm38mm10GRCm38
MGSCv375108,173,814 - 108,304,126 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365107,985,097 - 108,115,409 (-)NCBIMGSCv36mm8
Celera5104,857,421 - 104,987,772 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map552.23NCBI
Evi5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554231,784,264 - 1,997,561 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554231,784,255 - 1,997,561 (+)NCBIChiLan1.0ChiLan1.0
EVI5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21134,227,661 - 134,513,155 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11133,382,613 - 133,667,950 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0195,172,856 - 95,457,699 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1193,912,751 - 94,185,266 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl193,913,903 - 94,192,131 (-)Ensemblpanpan1.1panPan2
EVI5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1656,255,753 - 56,450,631 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl656,256,305 - 56,484,422 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha658,955,073 - 59,149,914 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0656,634,048 - 56,827,373 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl656,679,737 - 56,827,373 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1656,313,227 - 56,507,241 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0656,291,489 - 56,486,064 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0656,751,528 - 56,946,249 (+)NCBIUU_Cfam_GSD_1.0
Evi5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405058102,336,974 - 102,569,882 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365376,378,112 - 6,583,879 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365376,385,144 - 6,585,522 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EVI5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4124,395,315 - 124,600,581 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14124,367,778 - 124,600,585 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24136,018,324 - 136,229,029 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EVI5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12040,469,415 - 40,751,561 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2040,470,911 - 40,746,422 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603377,267,183 - 77,548,133 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Evi5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247425,007,691 - 5,241,158 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Evi5
283 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:82
Count of miRNA genes:70
Interacting mature miRNAs:73
Transcripts:ENSRNOT00000061630
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300159Bmd61Bone mineral density QTL 615.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
2300183Bmd60Bone mineral density QTL 605.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
619619Rf4Renal disease susceptibility QTL 44.10.002urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14132754612Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141131407Rat
71115Niddm15Non-insulin dependent diabetes mellitus QTL 154.8blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14121760611030812Rat
70204Niddm20Non-insulin dependent diabetes mellitus QTL 205.10.000008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)14121760616960180Rat

Markers in Region
D14Rat66  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2141,915,340 - 1,915,553 (+)MAPPERmRatBN7.2
Rnor_6.0142,932,439 - 2,932,651NCBIRnor6.0
Rnor_5.0142,932,840 - 2,933,052UniSTSRnor5.0
RGSC_v3.4142,469,113 - 2,469,326RGDRGSC3.4
RGSC_v3.4142,469,114 - 2,469,326UniSTSRGSC3.4
RGSC_v3.1142,469,114 - 2,469,326RGD
Celera141,934,896 - 1,935,108UniSTS
RH 3.4 Map1434.0UniSTS
RH 3.4 Map1434.0RGD
RH 2.0 Map1444.9RGD
SHRSP x BN Map142.29RGD
FHH x ACI Map141.37RGD
PMC166143P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21162,820,385 - 62,820,485 (+)MAPPERmRatBN7.2
mRatBN7.2141,916,947 - 1,917,047 (+)MAPPERmRatBN7.2
Rnor_6.01165,717,122 - 65,717,221NCBIRnor6.0
Rnor_6.0142,934,046 - 2,934,145NCBIRnor6.0
Rnor_5.0142,934,447 - 2,934,546UniSTSRnor5.0
Rnor_5.01168,811,340 - 68,811,439UniSTSRnor5.0
Celera1162,318,530 - 62,318,629UniSTS
Celera141,936,503 - 1,936,602UniSTS
Cytogenetic Map18p11UniSTS
Cytogenetic Map14p22UniSTS
BM390223  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2142,019,653 - 2,019,870 (+)MAPPERmRatBN7.2
Rnor_6.0143,036,213 - 3,036,429NCBIRnor6.0
Rnor_5.0143,037,156 - 3,037,372UniSTSRnor5.0
RGSC_v3.4142,573,289 - 2,573,505UniSTSRGSC3.4
Celera142,038,537 - 2,038,753UniSTS
RH 3.4 Map1434.1UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 17 57 41 19 41 3 3 74 35 38 11 3
Low 26 5 8 3 5
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001271410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC103310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000061630   ⟹   ENSRNOP00000058347
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl141,875,647 - 2,021,678 (+)Ensembl
Rnor_6.0 Ensembl142,892,753 - 3,038,237 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000101170   ⟹   ENSRNOP00000097949
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl141,900,749 - 2,021,678 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000105800   ⟹   ENSRNOP00000083349
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl141,907,269 - 2,021,678 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000117301   ⟹   ENSRNOP00000078953
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl141,875,647 - 2,021,678 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000118584   ⟹   ENSRNOP00000097247
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl141,875,647 - 2,021,678 (+)Ensembl
RefSeq Acc Id: NM_001271410   ⟹   NP_001258339
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8142,020,581 - 2,166,593 (+)NCBI
mRatBN7.2141,875,647 - 2,021,678 (+)NCBI
Rnor_6.0142,892,753 - 3,038,237 (+)NCBI
Rnor_5.0142,892,968 - 3,039,180 (+)NCBI
Celera141,895,442 - 2,040,561 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006250523   ⟹   XP_006250585
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8142,020,598 - 2,166,593 (+)NCBI
mRatBN7.2141,875,759 - 2,021,678 (+)NCBI
Rnor_6.0142,892,866 - 3,038,237 (+)NCBI
Rnor_5.0142,892,968 - 3,039,180 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006250525   ⟹   XP_006250587
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8142,020,524 - 2,166,593 (+)NCBI
mRatBN7.2141,875,601 - 2,018,321 (+)NCBI
Rnor_6.0142,892,738 - 3,038,237 (+)NCBI
Rnor_5.0142,892,968 - 3,039,180 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006250526   ⟹   XP_006250588
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8142,020,598 - 2,166,593 (+)NCBI
mRatBN7.2141,875,757 - 2,021,678 (+)NCBI
Rnor_6.0142,892,866 - 3,038,237 (+)NCBI
Rnor_5.0142,892,968 - 3,039,180 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006250527   ⟹   XP_006250589
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8142,020,598 - 2,166,593 (+)NCBI
mRatBN7.2141,875,758 - 2,018,321 (+)NCBI
Rnor_6.0142,892,866 - 3,038,237 (+)NCBI
Rnor_5.0142,892,968 - 3,039,180 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006250528   ⟹   XP_006250590
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8142,020,598 - 2,166,593 (+)NCBI
mRatBN7.2141,875,759 - 2,018,321 (+)NCBI
Rnor_6.0142,892,866 - 3,038,237 (+)NCBI
Rnor_5.0142,892,968 - 3,039,180 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006250533   ⟹   XP_006250595
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8142,052,760 - 2,166,593 (+)NCBI
mRatBN7.2141,908,591 - 2,021,678 (+)NCBI
Rnor_6.0142,928,064 - 3,038,237 (+)NCBI
Rnor_5.0142,892,968 - 3,039,180 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039091539   ⟹   XP_038947467
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8142,020,598 - 2,166,593 (+)NCBI
mRatBN7.2141,875,758 - 2,021,678 (+)NCBI
RefSeq Acc Id: XM_039091540   ⟹   XP_038947468
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8142,026,482 - 2,166,593 (+)NCBI
mRatBN7.2141,881,547 - 2,018,321 (+)NCBI
RefSeq Acc Id: XM_039091542   ⟹   XP_038947470
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8142,067,726 - 2,166,593 (+)NCBI
mRatBN7.2141,923,897 - 2,021,678 (+)NCBI
RefSeq Acc Id: XM_063272785   ⟹   XP_063128855
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8142,026,238 - 2,166,593 (+)NCBI
RefSeq Acc Id: XM_063272786   ⟹   XP_063128856
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8142,025,458 - 2,166,593 (+)NCBI
RefSeq Acc Id: XM_063272787   ⟹   XP_063128857
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8142,020,598 - 2,088,410 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001258339   ⟸   NM_001271410
- UniProtKB: D3ZJN9 (UniProtKB/TrEMBL),   A6KPH4 (UniProtKB/TrEMBL),   A0A8I6GMA4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006250587   ⟸   XM_006250525
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZM01 (UniProtKB/TrEMBL),   A0A8I6GMA4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006250585   ⟸   XM_006250523
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006250588   ⟸   XM_006250526
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006250589   ⟸   XM_006250527
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006250590   ⟸   XM_006250528
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006250595   ⟸   XM_006250533
- Peptide Label: isoform X8
- UniProtKB: A6KPH7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000058347   ⟸   ENSRNOT00000061630
RefSeq Acc Id: XP_038947467   ⟸   XM_039091539
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038947468   ⟸   XM_039091540
- Peptide Label: isoform X7
- UniProtKB: A0A8I6ASB5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038947470   ⟸   XM_039091542
- Peptide Label: isoform X9
- UniProtKB: A0A8I6GMA4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000078953   ⟸   ENSRNOT00000117301
RefSeq Acc Id: ENSRNOP00000097949   ⟸   ENSRNOT00000101170
RefSeq Acc Id: ENSRNOP00000083349   ⟸   ENSRNOT00000105800
RefSeq Acc Id: ENSRNOP00000097247   ⟸   ENSRNOT00000118584
RefSeq Acc Id: XP_063128857   ⟸   XM_063272787
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063128856   ⟸   XM_063272786
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063128855   ⟸   XM_063272785
- Peptide Label: isoform X7
Protein Domains
Rab-GAP TBC

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZJN9-F1-model_v2 AlphaFold D3ZJN9 1-809 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699154
Promoter ID:EPDNEW_R9679
Type:single initiation site
Name:Evi5_1
Description:ecotropic viral integration site 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0142,892,776 - 2,892,836EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2322879 AgrOrtholog
BioCyc Gene G2FUF-16630 BioCyc
Ensembl Genes ENSRNOG00000002039 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000061630 ENTREZGENE
  ENSRNOT00000061630.5 UniProtKB/TrEMBL
  ENSRNOT00000101170.1 UniProtKB/TrEMBL
  ENSRNOT00000105800.1 UniProtKB/TrEMBL
  ENSRNOT00000117301.1 UniProtKB/TrEMBL
  ENSRNOT00000118584.1 UniProtKB/TrEMBL
Gene3D-CATH putative rabgap domain of human tbc1 domain family member 14 like domains UniProtKB/TrEMBL
  Ypt/Rab-GAP domain of gyp1p, domain 1 UniProtKB/TrEMBL
  Ypt/Rab-GAP domain of gyp1p, domain 3 UniProtKB/TrEMBL
InterPro Rab-GTPase_TBC_sf UniProtKB/TrEMBL
  RabGAP/TBC_dom UniProtKB/TrEMBL
KEGG Report rno:100360066 UniProtKB/TrEMBL
NCBI Gene 100360066 ENTREZGENE
PANTHER EVI5-LIKE PROTEIN ISOFORM X1 UniProtKB/TrEMBL
  RAB GTPASE-ACTIVATING PROTEIN 1-LIKE UniProtKB/TrEMBL
Pfam TBC UniProtKB/TrEMBL
PhenoGen Evi5 PhenoGen
PROSITE TBC_RABGAP UniProtKB/TrEMBL
RatGTEx ENSRNOG00000002039 RatGTEx
SMART TBC UniProtKB/TrEMBL
Superfamily-SCOP RabGAP_TBC UniProtKB/TrEMBL
UniProt A0A8I5ZM01 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZWT1_RAT UniProtKB/TrEMBL
  A0A8I6ASB5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GMA4 ENTREZGENE, UniProtKB/TrEMBL
  A6KPH4 ENTREZGENE, UniProtKB/TrEMBL
  A6KPH7 ENTREZGENE, UniProtKB/TrEMBL
  D3ZJN9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-07-31 Evi5  ecotropic viral integration site 5  LOC100360066  rCG57228-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-06 LOC100360066  rCG57228-like      Symbol and Name status set to provisional 70820 PROVISIONAL