Rpl10a-ps9 (ribosomal protein L10A, pseudogene 9) - Rat Genome Database

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Gene: Rpl10a-ps9 (ribosomal protein L10A, pseudogene 9) Rattus norvegicus
Analyze
Symbol: Rpl10a-ps9
Name: ribosomal protein L10A, pseudogene 9
RGD ID: 2322811
Description: ENCODES a protein that exhibits RNA binding (inferred); INVOLVED IN maturation of LSU-rRNA (inferred); FOUND IN cytosolic large ribosomal subunit (inferred)
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: MODEL
Previously known as: LOC100363537; ribosomal protein L10a-like
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8410,323,329 - 10,324,080 (+)NCBIGRCr8
mRatBN7.249,589,501 - 9,590,219 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl49,589,524 - 9,591,040 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.046,029,190 - 6,029,932 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl46,029,211 - 6,029,932 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.046,051,383 - 6,052,115 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.444,988,512 - 4,989,227 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4729,280 - 730,018 (-)NCBICelera
Cytogenetic Map4q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function
RNA binding  (IEA)

References

Genomics

Variants

.
Variants in Rpl10a-ps9
65 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:41
Count of miRNA genes:41
Interacting mature miRNAs:41
Transcripts:ENSRNOT00000071701
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61351Bp33Blood pressure QTL 330.0018arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4127716890Rat
61408Scl23Serum cholesterol level QTL 230.0005blood HDL phospholipid amount (VT:0010504)serum high density lipoprotein phospholipid level (CMO:0001567)4127716890Rat
724557Plsm1Polydactyly-luxate syndrome (PLS) morphotypes QTL 10.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)4127716890Rat
1641905Colcr1Colorectal carcinoma resistance QTL 14.30.0003intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)4129494328Rat
61333Gluco16Glucose level QTL 164.30.00001adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)4130372989Rat
9589097Slep11Serum leptin concentration QTL 115.090.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)4131934116Rat
8552903Pigfal2Plasma insulin-like growth factor 1 level QTL 27.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)4131934116Rat
9589046Scfw2Subcutaneous fat weight QTL 25.540.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)4131934116Rat
9590100Sffal4Serum free fatty acids level QTL 47.360.05blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)4131934116Rat
738021Hcar13Hepatocarcinoma resistance QTL 134.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)4132584199Rat
1357341Gluco5Glucose level QTL 56.4adipocyte free fatty acid secretion trait (VT:0010465)absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)4133250345Rat
1357343Gluco4Glucose level QTL 40.00002adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)4133250345Rat
61415Eae11Experimental allergic encephalomyelitis QTL 112.9nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)4139505420Rat
634323Hc2Hypercalciuria QTL 22.15urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)421079645210796Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4521460278882945Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829457114705Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829465958103Rat
1358201Gluco12Glucose level QTL121.6adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake (CMO:0000870)4521839229593287Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521917856647776Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 1 4 4 3 4 1 4 7 8 1
Low 2 34 26 26 26 2 50 20 22 2
Below cutoff 14 6 11 6 1 1 10 5 8 2 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000071701
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl49,589,524 - 9,591,040 (+)Ensembl
Rnor_6.0 Ensembl46,029,211 - 6,029,932 (+)Ensembl
RefSeq Acc Id: XR_086219
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.249,589,501 - 9,590,219 (+)NCBI
Rnor_6.046,029,190 - 6,029,932 (+)NCBI
Rnor_5.046,051,383 - 6,052,115 (+)NCBI
RGSC_v3.444,988,512 - 4,989,227 (+)RGD
Sequence:
Protein Sequences
Ensembl Protein ENSRNOP00000080756.1
Reference Protein Sequences

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-46088 BioCyc
Ensembl Genes ENSRNOG00000047067 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000071701.3 UniProtKB/TrEMBL
Gene3D-CATH 3.30.190.20 UniProtKB/TrEMBL
InterPro Ribosomal_L1-like UniProtKB/TrEMBL
  Ribosomal_L1/biogenesis UniProtKB/TrEMBL
NCBI Gene 100363537 ENTREZGENE
PANTHER RIBOSOMAL PROTEIN UniProtKB/TrEMBL
  RIBOSOMAL PROTEIN L7AE FAMILY MEMBER UniProtKB/TrEMBL
Pfam Ribosomal_L1 UniProtKB/TrEMBL
PhenoGen Rpl10a-ps9 PhenoGen
RatGTEx ENSRNOG00000047067 RatGTEx
Superfamily-SCOP SSF56808 UniProtKB/TrEMBL
UniProt A0A8I5ZRG4_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Rpl10a-ps9  ribosomal protein L10A, pseudogene 9  LOC100363537  ribosomal protein L10a-like  Symbol and Name Changed 1299863 APPROVED
2010-05-06 LOC100363537  ribosomal protein L10a-like      Symbol and Name status set to provisional 70820 PROVISIONAL