LOC100360181 (leucine rich repeat and fibronectin type III domain containing 5)

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Keyword

Gene: LOC100360181 (leucine rich repeat and fibronectin type III domain containing 5) Rattus norvegicus

Symbol:

LOC100360181

Name:

leucine rich repeat and fibronectin type III domain containing 5

Description:

INTERACTS WITH cyclosporin A (ortholog)

Type:

protein-coding

Also known as:

leucine rich repeat and fibronectin type III domain containing 5

Latest Assembly:

RGSC Genome Assembly v3.4

NCBI Annotation Information:

Genome Annotation Status: not on current assembly

Position:

Map	Chr	Position	Strand	Source
Rat Cytogenetic Map	6			NCBI
RGSC Genome Assembly v3.4	6	82,886,234 - 82,902,911	+	NCBI

Model

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Annotation (Toggle Detail/Summary View)

Gene-Chemical Interaction Annotations

References - curated

Genomics

QTLs in Region (RGSC Genome Assembly v3.4)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1576309	Emca7	Estrogen-induced mammary cancer QTL 7	4		Mammary tumor susceptibility	estradiol-induced	6	2802670	111967837	Rat
4145119	Mcs25	Mammary carcinoma susceptibility QTL 25		.0001	Mammary tumor susceptibility		6	7161389	115238799	Rat
2293839	Kiddil2	Kidney dilation QTL 2	4.8		Renal pathology	kidney dilation	6	20798926	84287337	Rat
2293841	Kiddil4	Kidney dilation QTL 4	4.4		Renal pathology	kidney dilation	6	20798926	84287337	Rat
6893340	Cm77	Cardiac mass QTL 77	.26	.57	Cardiac mass	body weight adjusted	6	34039461	84287190	Rat
737827	Hcar11	Hepatocarcinoma resistance QTL 11	4.4		Liver tumor resistance	nodule number	6	41300997	115238799	Rat
634330	Pia16	Pristane induced arthritis QTL 16	3.9		Joint/bone inflammation	pristane induced	6	47039212	108621490	Rat
4889848	Pur25	Proteinuria QTL 25	14	.003	Renal function	urine protein level	6	58941174	93819252	Rat
1558641	Cm47	Cardiac mass QTL 47	2.9	.001	Cardiac mass	body weight adjusted	6	59946874	108503674	Rat
6893332	Cm74	Cardiac mass QTL 74	.4	.64	Cardiac mass	body weight adjusted	6	59946874	108503674	Rat
70176	Mcsm1	Mammary carcinoma susceptibility modifier QTL 1			Mammary tumor susceptibility	modification	6	61787263	106787263	Rat
731173	Uae22	Urinary albumin excretion QTL 22	10.1		Renal function	urine albumin level	6	68036028	123455207	Rat
2290393	Uae37	Urinary albumin excretion QTL 37		.0001	Renal function	urine albumin level	6	68036028	123455207	Rat
1641904	Alcrsp4	Alcohol response QTL 4			Alcohol response	loss of righting reflex	6	70874239	115874239	Rat
1331789	Rf37	Renal function QTL 37	3.224		Renal function	renal vascular resistance	6	75049527	120074417	Rat
724536	Uae7	Urinary albumin excretion QTL 7	3.5		Renal function	urine albumin level	6	75049527	136452267	Rat
1331799	Bp211	Blood pressure QTL 211	3.66407		Blood pressure	time series calculation	6	75049527	136649854	Rat
2301964	Bp323	Blood pressure QTL 323	4.3		Blood pressure	systolic	6	75049644	84287190	Rat
1300075	Glom7	Glomerulus QTL 7	5.6	.0000002	Renal function	glomerulus number	6	75061972	120061972	Rat
1576302	Schws4	Schwannoma susceptibility QTL 4		.0078	Neural tumor susceptibility	tumor incidence, length of survival time	6	76340580	121340580	Rat
724524	Uae2	Urinary albumin excretion QTL 2	2.7	.0005	Renal function	urine albumin level	6	76380261	114031923	Rat

Sequence

Nucleotide Sequences

Protein Sequences

Strain Variation

Strain Sequence Variants

ACI/Eur (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14

ACI/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

BN-Lx (ICL)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Imperial College London (Dr Timothy Aitman)
Platform:	SOLID
Secondary Analysis:	BWA, GATK, Samtools
Breeder:	Academy of Sciences of the Czech Republic (Dr.Michal Pravenec)
Grant Information:	MC-A654-5QB00

BN-Lx (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	Academy of Sciences of the Czech Republic (Dr.Michal Pravenec)
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

BN/NHsdMcwi (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	Medical College of Wisconsin
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

BN/SsN (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

Buf/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

COP/Crl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) Univiersity of Wisconsin (Jim Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v2.3-5
Breeder:	Charles River
Grant Information:	NIH (CA77876)

F344/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14

FHH/EurMcwi (MDC)

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Sequenced By:	Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	Illumina/Solexa, Genome Analyzer II
Secondary Analysis:	CASAVA Software v1.7
Breeder:	Medical College of Wisconsin
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v2.3-5

LE/Stm (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	Dr. Tadao Serikawa, Kyoto Japan.
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

M520/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

MR/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

SHR/Olalpcv (ICL)

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Sequenced By:	Imperial College London (Dr Timothy Aitman) University of British Columbia (Dr. Steven Jones)
Platform:	Illumina Hi-seq 2000 and GAII
Secondary Analysis:	BWA, GATK
Breeder:	Institute of Physiology, Academy of Sciences of the Czech Republic, Prague
Grant Information:	LSHG-CT-2005-019015, HEALTH-F4-2010-241504

SHR/Olalpcv (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Imperial College London (Dr Timothy Aitman)
Platform:	Illumina
Secondary Analysis:	GATK
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

SHRSP/Gcrc (MDC)

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Sequenced By:	Max Delbruch Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	Illumina/Solexa, Genome Analyzer II
Secondary Analysis:	CASAVA Software v1.7
Breeder:	University of Glasgow, Anna Dominiczak
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14
Breeder:	Harlan

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14
Grant Information:	R01 HL089930

SS/JrHsdMcwi (MDC)

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Sequenced By:	Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	Illumina/Solexa, Genome Analyzer II
Secondary Analysis:	CASAVA Software v1.7
Breeder:	Medical College of Wisconsin
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

WKY/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

WN/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

Additional Information

External Database Links

Nomenclature History

More on LOC100360181
	Entrez Gene
	Ensembl Gene
	Genome Browser
	NCBI Map Viewer
	Vista
	Vista + UCSC

RGD Object Information
RGD ID:	2322668
Created:	2010-05-06
Species:	Rattus norvegicus
Last Modified:	2013-04-16
Status:	ACTIVE