H3f3a-ps9 (H3.3 histone A, pseudogene 9) - Rat Genome Database

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Gene: H3f3a-ps9 (H3.3 histone A, pseudogene 9) Rattus norvegicus
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Symbol: H3f3a-ps9
Name: H3.3 histone A, pseudogene 9
RGD ID: 2322285
Description: Predicted to enable DNA binding activity and protein heterodimerization activity. Predicted to be a structural constituent of chromatin. Predicted to be part of nucleosome.
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: MODEL
Previously known as: hypothetical LOC100360368; LOC100360368
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81166,110,136 - 66,110,968 (-)NCBIGRCr8
mRatBN7.21152,647,250 - 52,648,006 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1152,647,167 - 52,648,022 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01155,304,507 - 55,305,338 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01158,470,262 - 58,471,085 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41153,935,311 - 53,935,720 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1152,245,719 - 52,246,550 (-)NCBICelera
Cytogenetic Map11q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleosome  (IEA)
nucleus  (IEA)

Molecular Function

References

Genomics

Variants

.
Variants in H3f3a-ps9
5 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)112952841860324829Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)113123913478851519Rat
70180BpQTLcluster10Blood pressure QTL cluster 103.19arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)113491804179918041Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)114094618882566702Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)114428575982566702Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)114545932375190161Rat


Expression


Sequence


RefSeq Acc Id: ENSRNOT00000110622   ⟹   ENSRNOP00000078887
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1152,647,167 - 52,648,022 (-)Ensembl
RefSeq Acc Id: XR_358260
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81166,110,136 - 66,110,968 (-)NCBI
mRatBN7.21152,647,250 - 52,648,006 (-)NCBI
Rnor_6.01155,304,507 - 55,305,338 (-)NCBI
Rnor_5.01158,470,262 - 58,471,085 (-)NCBI
Sequence:
Protein Sequences
Ensembl Protein ENSRNOP00000078887.1
RefSeq Acc Id: ENSRNOP00000078887   ⟸   ENSRNOT00000110622
Protein Domains
Histone H2A/H2B/H3

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-21412 BioCyc
Ensembl Genes ENSRNOG00000065853 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000110622.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.20.10 UniProtKB/TrEMBL
InterPro Histone-fold UniProtKB/TrEMBL
  Histone_H2A/H2B/H3 UniProtKB/TrEMBL
  Histone_H3/CENP-A UniProtKB/TrEMBL
NCBI Gene 100360368 ENTREZGENE
PANTHER HISTONE H3.3-RELATED UniProtKB/TrEMBL
  PTHR11426 UniProtKB/TrEMBL
Pfam Histone UniProtKB/TrEMBL
PhenoGen H3f3a-ps9 PhenoGen
PRINTS HISTONEH3 UniProtKB/TrEMBL
PROSITE HISTONE_H3_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000065853 RatGTEx
SMART SM00428 UniProtKB/TrEMBL
Superfamily-SCOP SSF47113 UniProtKB/TrEMBL
UniProt A0A8I6G2H8_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 H3f3a-ps9  H3.3 histone A, pseudogene 9  LOC100360368  hypothetical LOC100360368  Symbol and Name Changed 1299863 APPROVED
2010-05-06 LOC100360368  hypothetical LOC100360368      Symbol and Name status set to provisional 70820 PROVISIONAL