Dnajc1 (DnaJ heat shock protein family (Hsp40) member C1) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Dnajc1 (DnaJ heat shock protein family (Hsp40) member C1) Rattus norvegicus
Analyze
Symbol: Dnajc1
Name: DnaJ heat shock protein family (Hsp40) member C1
RGD ID: 2322144
Description: Predicted to enable protein-folding chaperone binding activity. Predicted to be involved in regulation of protein secretion. Predicted to act upstream of or within protein folding and regulation of translation. Predicted to be located in endoplasmic reticulum and plasma membrane. Predicted to be active in endomembrane system. Orthologous to human DNAJC1 (DnaJ heat shock protein family (Hsp40) member C1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; flutamide; gentamycin.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: DnaJ (Hsp40) homolog, subfamily C, member 1; DnaJ (Hsp40) homolog, subfamily C, member 1-like; dnaJ homolog subfamily C member 1; LOC100360412; LOC291369
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81785,863,651 - 86,020,954 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1785,863,651 - 86,020,432 (-)EnsemblGRCr8
mRatBN7.21780,955,209 - 81,112,025 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1780,955,237 - 81,111,988 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1784,427,648 - 84,584,366 (-)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01788,263,048 - 88,419,762 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01782,285,305 - 82,436,506 (-)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1787,193,295 - 87,344,455 (-)NCBI
Lyon_Normotensive1786,491,432 - 86,642,605 (-)NCBI
Lyon_Hypertensive1784,279,444 - 84,430,615 (-)NCBI
F344_StmMcwi1785,439,521 - 85,590,711 (-)NCBI
Rnor_6.01784,986,994 - 85,141,464 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1784,986,991 - 85,141,210 (-)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.01786,711,018 - 86,865,514 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41792,395,721 - 92,552,268 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1780,237,998 - 80,394,263 (-)NCBICelera
RGSC_v3.11792,406,553 - 92,563,101 (-)NCBI
Cytogenetic Map17q12.3NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12065409   PMID:14668352   PMID:19946888   PMID:22837305  


Genomics

Comparative Map Data
Dnajc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81785,863,651 - 86,020,954 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1785,863,651 - 86,020,432 (-)EnsemblGRCr8
mRatBN7.21780,955,209 - 81,112,025 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1780,955,237 - 81,111,988 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1784,427,648 - 84,584,366 (-)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01788,263,048 - 88,419,762 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01782,285,305 - 82,436,506 (-)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1787,193,295 - 87,344,455 (-)NCBI
Lyon_Normotensive1786,491,432 - 86,642,605 (-)NCBI
Lyon_Hypertensive1784,279,444 - 84,430,615 (-)NCBI
F344_StmMcwi1785,439,521 - 85,590,711 (-)NCBI
Rnor_6.01784,986,994 - 85,141,464 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1784,986,991 - 85,141,210 (-)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.01786,711,018 - 86,865,514 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41792,395,721 - 92,552,268 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1780,237,998 - 80,394,263 (-)NCBICelera
RGSC_v3.11792,406,553 - 92,563,101 (-)NCBI
Cytogenetic Map17q12.3NCBI
DNAJC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381021,756,548 - 22,003,730 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1021,756,535 - 22,003,769 (-)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh371022,045,477 - 22,292,659 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361022,085,483 - 22,332,656 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341022,085,512 - 22,332,476NCBI
Celera1021,733,220 - 21,980,371 (-)NCBICelera
Cytogenetic Map10p12.31NCBI
HuRef1021,707,201 - 21,953,940 (-)NCBIHuRef
CHM1_11022,046,308 - 22,293,390 (-)NCBICHM1_1
T2T-CHM13v2.01021,775,622 - 22,022,755 (-)NCBIT2T-CHM13v2.0
Dnajc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39218,210,445 - 18,402,025 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl218,200,465 - 18,397,661 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38218,205,634 - 18,394,099 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl218,195,654 - 18,392,830 (-)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv37218,138,762 - 18,314,134 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36218,134,889 - 18,310,261 (-)NCBIMGSCv36mm8
Celera218,114,560 - 18,289,457 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map212.89NCBI
Dnajc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554296,806,909 - 6,987,432 (+)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_0049554296,806,456 - 6,987,579 (+)NCBIChiLan1.0ChiLan1.0
DNAJC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2834,443,433 - 34,690,254 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11034,448,555 - 34,695,576 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01021,920,188 - 22,166,782 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11022,297,332 - 22,542,771 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1022,297,332 - 22,542,771 (-)EnsemblPanPan1.1 EnsemblpanPan2panpan1.1
DNAJC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1211,126,312 - 11,333,613 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl211,126,311 - 11,333,591 (+)EnsemblCanFam3.1 EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha29,819,072 - 10,025,890 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.029,375,367 - 9,582,762 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl29,375,362 - 9,582,819 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.128,689,010 - 8,895,069 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.028,773,573 - 8,979,836 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.028,948,296 - 9,155,636 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Dnajc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap11081,534,447 - 81,744,801 (+)NCBImIctTri1.hap1
HiC_Itri_2NW_02440934421,795,131 - 22,004,095 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365205,956,366 - 6,165,552 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365205,956,402 - 6,165,346 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNAJC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1052,862,835 - 53,060,740 (+)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.11052,862,813 - 53,060,747 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21058,570,361 - 58,721,786 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DNAJC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap1921,782,340 - 22,018,473 (-)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_02366605127,293,751 - 27,529,235 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.1921,561,039 - 21,795,578 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl921,560,303 - 21,795,462 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Dnajc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247966,548,755 - 6,760,046 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
HetGla_female_1.0 EnsemblNW_0046247966,548,295 - 6,760,046 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
Naked mole-rat maternal Ensembl85,524,192 - 5,724,830 (+)Ensembl
Dnajc1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1145,592,872 - 5,752,652 (+)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1

Variants

.
Variants in Dnajc1
1556 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:111
Count of miRNA genes:82
Interacting mature miRNAs:91
Transcripts:ENSRNOT00000000162
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12904736Cm121Cardiac mass QTL 1210.043heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)174238816487388164Rat
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)174238816487388164Rat
1300148Bp192Blood pressure QTL 1923.47arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)174605012691050126Rat
631502Cm26Cardiac mass QTL 263.71heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)177061350286062352Rat
1354588Bvd4Brain ventricular dilatation QTL 45.310.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)175819406487388164Rat
4889894Eae33Experimental allergic encephalomyelitis QTL 335.20.0001nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)175560459793006569Rat
2317038Ginf3Gastrointestinal inflammation QTL 32.890.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)175482950393515804Rat
2324621Coatc5Coat color QTL 5coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)174265489587654895Rat
1598871Memor5Memory QTL 55.3exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)174096801789341781Rat
1300131Bp193Blood pressure QTL 1933.3arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)176855004093515804Rat
1300129Rf25Renal function QTL 253.03blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)174106235286062352Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173219953486201342Rat
61466Niddm12Non-insulin dependent diabetes mellitus QTL 123.20.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)176515487293515804Rat
2302365Gluco40Glucose level QTL 404.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)176456982086954580Rat

Markers in Region
D17Rat85  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81785,984,752 - 85,984,953 (+)Marker Load Pipeline
mRatBN7.21781,076,316 - 81,076,517 (+)MAPPERmRatBN7.2
Rnor_6.01785,105,855 - 85,106,055NCBIRnor6.0
Rnor_5.01786,829,738 - 86,829,938UniSTSRnor5.0
RGSC_v3.41792,516,888 - 92,517,089RGDRGSC3.4
RGSC_v3.41792,516,889 - 92,517,089UniSTSRGSC3.4
Celera1780,358,677 - 80,358,877UniSTS
RGSC_v3.11792,527,722 - 92,527,922RGD
RH 3.4 Map17829.2UniSTS
RH 3.4 Map17829.2RGD
RH 2.0 Map17690.2RGD
SHRSP x BN Map1747.5399RGD
D17Got111  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81785,901,990 - 85,902,114 (+)Marker Load Pipeline
mRatBN7.21780,993,551 - 80,993,675 (+)MAPPERmRatBN7.2
Rnor_6.01785,025,332 - 85,025,455NCBIRnor6.0
Rnor_5.01786,749,356 - 86,749,479UniSTSRnor5.0
RGSC_v3.41792,434,059 - 92,434,183RGDRGSC3.4
RGSC_v3.41792,434,060 - 92,434,183UniSTSRGSC3.4
Celera1780,276,172 - 80,276,295UniSTS
RGSC_v3.11792,444,893 - 92,445,016RGD
RH 3.4 Map17815.4RGD
RH 3.4 Map17815.4UniSTS
RH 2.0 Map17690.9RGD
SGC32110  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21780,955,270 - 80,955,401 (+)MAPPERmRatBN7.2
Rnor_6.01784,987,056 - 84,987,186NCBIRnor6.0
Rnor_5.01786,711,080 - 86,711,210UniSTSRnor5.0
RGSC_v3.41792,395,783 - 92,395,913UniSTSRGSC3.4
Celera1780,238,060 - 80,238,190UniSTS
BE106947  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81785,873,060 - 85,873,213 (+)Marker Load Pipeline
mRatBN7.21780,964,620 - 80,964,773 (+)MAPPERmRatBN7.2
Rnor_6.01784,996,404 - 84,996,556NCBIRnor6.0
Rnor_5.01786,720,428 - 86,720,580UniSTSRnor5.0
RGSC_v3.41792,405,131 - 92,405,283UniSTSRGSC3.4
Celera1780,247,392 - 80,247,544UniSTS
RH 3.4 Map17827.4UniSTS
BF390305  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21781,076,539 - 81,076,713 (+)MAPPERmRatBN7.2
Rnor_6.01785,106,078 - 85,106,251NCBIRnor6.0
Rnor_5.01786,829,961 - 86,830,134UniSTSRnor5.0
RGSC_v3.41792,517,112 - 92,517,285UniSTSRGSC3.4
Celera1780,358,900 - 80,359,073UniSTS
RH 3.4 Map17830.5UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
276 156 730 1589 4038 1011 1728 132 874 492 856 156 5390 2591 449 3951 38 1392 739 909 160 158

Sequence


Ensembl Acc Id: ENSRNOT00000000162   ⟹   ENSRNOP00000000162
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1785,863,651 - 86,020,432 (-)Ensembl
mRatBN7.2 Ensembl1780,955,237 - 81,111,988 (-)Ensembl
Rnor_6.0 Ensembl1784,986,991 - 85,141,210 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000107261   ⟹   ENSRNOP00000093124
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1785,863,651 - 86,020,432 (-)Ensembl
mRatBN7.2 Ensembl1780,957,492 - 81,111,953 (-)Ensembl
RefSeq Acc Id: NM_001400837   ⟹   NP_001387766
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81785,863,651 - 86,020,432 (-)NCBI
mRatBN7.21780,955,209 - 81,111,997 (-)NCBI
Dahl_SR_JrHsd1787,193,295 - 87,344,455 (-)NCBI
Lyon_Normotensive1786,491,432 - 86,642,605 (-)NCBI
Lyon_Hypertensive1784,279,444 - 84,430,615 (-)NCBI
F344_StmMcwi1785,439,521 - 85,590,711 (-)NCBI
RefSeq Acc Id: XM_039096459   ⟹   XP_038952387
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81785,866,483 - 86,020,954 (-)NCBI
mRatBN7.21780,958,041 - 81,112,024 (-)NCBI
RefSeq Acc Id: XM_039096460   ⟹   XP_038952388
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81785,863,651 - 85,924,036 (-)NCBI
mRatBN7.21780,955,209 - 81,015,606 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001387766 (Get FASTA)   NCBI Sequence Viewer  
  XP_038952387 (Get FASTA)   NCBI Sequence Viewer  
  XP_038952388 (Get FASTA)   NCBI Sequence Viewer  
  XP_214522 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000000162
  ENSRNOP00000000162.7
  ENSRNOP00000093124.2
Ensembl Acc Id: ENSRNOP00000000162   ⟸   ENSRNOT00000000162
RefSeq Acc Id: XP_038952388   ⟸   XM_039096460
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038952387   ⟸   XM_039096459
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000093124   ⟸   ENSRNOT00000107261
RefSeq Acc Id: NP_001387766   ⟸   NM_001400837
- UniProtKB: F1LVX1 (UniProtKB/TrEMBL),   A0A8I6GKI7 (UniProtKB/TrEMBL)
Protein Domains
J   Myb-like   SANT

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LVX1-F1-model_v2 AlphaFold F1LVX1 1-565 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700609
Promoter ID:EPDNEW_R11128
Type:multiple initiation site
Name:Dnajc1_1
Description:DnaJ heat shock protein family member C1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01785,141,200 - 85,141,260EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2322144 AgrOrtholog
BioCyc Gene G2FUF-8568 BioCyc
Ensembl Genes ENSRNOG00000000150 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000000162 ENTREZGENE
  ENSRNOT00000000162.9 UniProtKB/TrEMBL
  ENSRNOT00000107261.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.110 UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
InterPro DnaJ_dom_sf UniProtKB/TrEMBL
  DnaJ_domain_protein UniProtKB/TrEMBL
  DnaJ_N UniProtKB/TrEMBL
  Heat_shock_DnaJ_CS UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
  SANT_DNA-bd UniProtKB/TrEMBL
  SANT_eukarya UniProtKB/TrEMBL
KEGG Report rno:100360412 UniProtKB/TrEMBL
NCBI Gene 100360412 ENTREZGENE
PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 UniProtKB/TrEMBL
  DNAJ HOMOLOG SUBFAMILY C MEMBER 1 UniProtKB/TrEMBL
Pfam DnaJ UniProtKB/TrEMBL
  Myb_DNA-binding_2 UniProtKB/TrEMBL
PhenoGen Dnajc1 PhenoGen
PRINTS JDOMAIN UniProtKB/TrEMBL
PROSITE DNAJ_1 UniProtKB/TrEMBL
  DNAJ_2 UniProtKB/TrEMBL
  MYB_LIKE UniProtKB/TrEMBL
  SANT UniProtKB/TrEMBL
RatGTEx ENSRNOG00000000150 RatGTEx
SMART DnaJ UniProtKB/TrEMBL
  SANT UniProtKB/TrEMBL
Superfamily-SCOP DnaJ_N UniProtKB/TrEMBL
  Homeodomain_like UniProtKB/TrEMBL
UniProt A0A8I6GKI7 ENTREZGENE, UniProtKB/TrEMBL
  F1LVX1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-25 Dnajc1  DnaJ heat shock protein family (Hsp40) member C1  Dnajc1  DnaJ (Hsp40) homolog, subfamily C, member 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-08-07 LOC100360412  DnaJ (Hsp40) homolog, subfamily C, member 1-like  Dnajc1  DnaJ (Hsp40) homolog, subfamily C, member 1  Data merged from RGD:1308328 737654 APPROVED
2012-08-07 Dnajc1  DnaJ (Hsp40) homolog, subfamily C, member 1  LOC100360412  DnaJ (Hsp40) homolog, subfamily C, member 1-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-06 LOC100360412  DnaJ (Hsp40) homolog, subfamily C, member 1-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 Dnajc1  DnaJ (Hsp40) homolog, subfamily C, member 1   Dnajc1_predicted  DnaJ (Hsp40) homolog, subfamily C, member 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Dnajc1_predicted  DnaJ (Hsp40) homolog, subfamily C, member 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED