LOC100360491 (60S ribosomal protein L13-like) - Rat Genome Database

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Gene: LOC100360491 (60S ribosomal protein L13-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC100360491
Name: 60S ribosomal protein L13-like
RGD ID: 2322065
Description: Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be part of cytosolic large ribosomal subunit. Orthologous to human RPL13 (ribosomal protein L13).
Type: protein-coding
RefSeq Status: MODEL
Previously known as: large ribosomal subunit protein eL13-like
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81485,568,584 - 85,575,407 (+)NCBIGRCr8
mRatBN7.21481,356,644 - 81,357,364 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1481,356,642 - 81,357,364 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01486,751,142 - 86,751,844 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1486,751,157 - 86,751,792 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01480,385,623 - 80,386,348 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41487,245,025 - 87,245,660 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1480,238,321 - 80,239,023 (+)NCBICelera
Cytogenetic Map14q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in LOC100360491
1 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143766971982669719Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143766971982669719Rat
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143766971982669719Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143766971982669719Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143905723783368335Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144226252995023211Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)145002321195023211Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1455147478100147478Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1455624247100624247Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1455624247100624247Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1456631369101631369Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1458184885103184885Rat
70153Bp59Blood pressure QTL 593.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)146875779683368335Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1470053989104886043Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1470053989104886043Rat
1582197Gluco27Glucose level QTL 273.40.0006blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)147341532392554092Rat
1582209Gluco20Glucose level QTL 203.80.0005blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532392554092Rat
1582236Gluco22Glucose level QTL 223.30.0164blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532392554092Rat
1582255Gluco29Glucose level QTL 293.10.0025blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)147341532392554092Rat
1582250Gluco26Glucose level QTL 263.30.0009blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532395876975Rat
631213Bw60Body weight QTL604.51retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)147995092195876975Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 1 2 20 17
Below cutoff 1 24 39 27 10 27 3 5 37 20 19 7 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000067997   ⟹   ENSRNOP00000064082
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1481,356,642 - 81,357,364 (-)Ensembl
Rnor_6.0 Ensembl1486,751,157 - 86,751,792 (+)Ensembl
RefSeq Acc Id: XM_063273845   ⟹   XP_063129915
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81485,568,584 - 85,575,407 (+)NCBI
Protein Sequences
Protein RefSeqs XP_063129915 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000064082.3
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000064082   ⟸   ENSRNOT00000067997
RefSeq Acc Id: XP_063129915   ⟸   XM_063273845

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZRM9-F1-model_v2 AlphaFold D3ZRM9 1-211 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699485
Promoter ID:EPDNEW_R10000
Type:multiple initiation site
Name:LOC100360491_1
Description:60S ribosomal protein L13-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01486,751,119 - 86,751,179EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2322065 AgrOrtholog
BioCyc Gene G2FUF-15084 BioCyc
Ensembl Genes ENSRNOG00000061438 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000067997.4 UniProtKB/TrEMBL
NCBI Gene 100360491 ENTREZGENE
PhenoGen LOC100360491 PhenoGen
RatGTEx ENSRNOG00000061438 RatGTEx
UniProt D3ZRM9_RAT UniProtKB/TrEMBL
UniProt Secondary M0R407 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-05-06 LOC100360491  60S ribosomal protein L13-like      Symbol and Name status set to provisional 70820 PROVISIONAL