Cd209al1 (CD209a molecule like 1) - Rat Genome Database

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Gene: Cd209al1 (CD209a molecule like 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Cd209al1 (Ensembl: LOC100363914)
Name: CD209a molecule like 1 (Ensembl:hypothetical LOC100363914)
RGD ID: 2322042
Description: ENCODES a protein that exhibits fucose binding (inferred); mannose binding (inferred); FOUND IN external side of plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CD209 antigen-like protein A; CD209 antigen-like protein A-like; hypothetical LOC100363914; LOC100363914; LOC100911529; LOC688926; similar to Cd209e antigen
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8126,778,511 - 6,809,708 (+)NCBIGRCr8
mRatBN7.2122,004,527 - 2,011,820 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl121,980,627 - 2,011,828 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0122,918,913 - 2,954,890 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0125,096,473 - 5,103,739 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4122,106,586 - 2,174,912 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera123,843,649 - 3,863,652 (+)NCBICelera
Cytogenetic Map12p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Cd209al1
117 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300174Bw15Body weight QTL 152.93body mass (VT:0001259)body weight loss (CMO:0001399)1219318387Rat
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12119611090Rat
10755457Coatc14Coat color QTL 140.01759coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)12122591684Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12123297788Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)127977298525593Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat

Markers in Region
D12Got222  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2122,052,228 - 2,052,358 (+)MAPPERmRatBN7.2
Rnor_6.0123,482,480 - 3,482,609NCBIRnor6.0
Rnor_5.0125,625,076 - 5,625,205UniSTSRnor5.0
RGSC_v3.4122,057,891 - 2,058,020UniSTSRGSC3.4
Celera123,904,294 - 3,904,423UniSTS


Expression


Sequence


RefSeq Acc Id: ENSRNOT00000001348   ⟹   ENSRNOP00000001348
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl121,980,627 - 1,987,842 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000078671   ⟹   ENSRNOP00000072513
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl122,004,468 - 2,011,828 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000113590   ⟹   ENSRNOP00000082045
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl121,980,674 - 2,011,828 (+)Ensembl
RefSeq Acc Id: XM_039089887   ⟹   XP_038945815
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8126,802,406 - 6,809,708 (+)NCBI
mRatBN7.2122,004,527 - 2,011,820 (+)NCBI
RefSeq Acc Id: XM_063271919   ⟹   XP_063127989
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8126,778,511 - 6,809,708 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038945815 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127989 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000001348.8
  ENSRNOP00000072513
  ENSRNOP00000072513.2
  ENSRNOP00000082045.1
RefSeq Acc Id: XP_038945815   ⟸   XM_039089887
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K361 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000082045   ⟸   ENSRNOT00000113590
RefSeq Acc Id: ENSRNOP00000072513   ⟸   ENSRNOT00000078671
RefSeq Acc Id: ENSRNOP00000001348   ⟸   ENSRNOT00000001348
RefSeq Acc Id: XP_063127989   ⟸   XM_063271919
- Peptide Label: isoform X2
Protein Domains
C-type lectin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K361-F1-model_v2 AlphaFold A0A0G2K361 1-218 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2322042 AgrOrtholog
BioCyc Gene G2FUF-20372 BioCyc
Ensembl Genes ENSRNOG00000069254 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000001348.8 UniProtKB/TrEMBL
  ENSRNOT00000078671.2 UniProtKB/TrEMBL
  ENSRNOT00000113590.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.100.10 UniProtKB/TrEMBL
InterPro C-type_lectin-like UniProtKB/TrEMBL
  C-type_lectin-like/link_sf UniProtKB/TrEMBL
  CD209-like_CTLD UniProtKB/TrEMBL
  CTDL_fold UniProtKB/TrEMBL
NCBI Gene 100363914 ENTREZGENE
PANTHER KILLER CELL LECTIN-LIKE RECEPTOR SUBFAMILY B MEMBER 1 UniProtKB/TrEMBL
  KILLER CELL LECTIN-LIKE RECEPTOR SUBFAMILY B MEMBER 1 UniProtKB/TrEMBL
Pfam Lectin_C UniProtKB/TrEMBL
PhenoGen Cd209al1 PhenoGen
PROSITE C_TYPE_LECTIN_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000069254 RatGTEx
SMART CLECT UniProtKB/TrEMBL
Superfamily-SCOP SSF56436 UniProtKB/TrEMBL
UniProt A0A0G2K361 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZWB3_RAT UniProtKB/TrEMBL
  F1M1A9_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Cd209al1  CD209a molecule like 1  LOC100363914  hypothetical LOC100363914  Symbol and Name Changed 1299863 APPROVED
2021-03-09 LOC100363914  hypothetical LOC100363914  LOC100911529  CD209 antigen-like protein A-like  Data merged from RGD:6492361 737654 PROVISIONAL
2015-07-29 LOC100363914  hypothetical LOC100363914  LOC688926  similar to Cd209e antigen  Data merged from RGD:1582981 737654 PROVISIONAL
2012-07-05 LOC100911529  CD209 antigen-like protein A-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2010-05-06 LOC100363914  hypothetical LOC100363914      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC688926  similar to Cd209e antigen      Symbol and Name status set to provisional 70820 PROVISIONAL