Rpl19l4 (ribosomal protein L19 like 4) - Rat Genome Database

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Gene: Rpl19l4 (ribosomal protein L19 like 4) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rpl19l4 (Ensembl: LOC100364265)
Name: ribosomal protein L19 like 4 (Ensembl:ribosomal protein L19-like)
RGD ID: 2321393
Description: Predicted to enable single-stranded RNA binding activity. Predicted to be involved in retrotransposition. Predicted to be part of ribonucleoprotein complex.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC100364265; ribosomal protein L19-like; uncharacterized protein LOC100364265
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8521,686,113 - 21,689,366 (-)NCBIGRCr8
mRatBN7.2516,880,899 - 16,898,782 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl516,880,899 - 16,896,524 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0516,766,958 - 16,782,819 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl516,767,024 - 16,782,647 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0521,544,713 - 21,560,336 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera516,255,402 - 16,271,269 (-)NCBICelera
Cytogenetic Map5q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Rpl19l4
88 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:25
Count of miRNA genes:25
Interacting mature miRNAs:25
Transcripts:ENSRNOT00000072844
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
61462Niddm10Non-insulin dependent diabetes mellitus QTL 103.90.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)5511215947171491Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat
1300117Hrtrt8Heart rate QTL 83.49heart pumping trait (VT:2000009)heart rate (CMO:0000002)5384401847869213Rat
1641903Alcrsp3Alcohol response QTL 3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)51268928557689285Rat
2293666Bmd38Bone mineral density QTL 384.4femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)5894822853948228Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
631827Alc4Alcohol consumption QTL 43.5consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)5818750118616199Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
2312562Pur18Proteinuria QTL 182.60.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)5213896532656739Rat
2313085Bss59Bone structure and strength QTL 592.90.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)5384401826141981Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5228222669540447Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5982326699753708Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 2 9 27 11 19 11 8 8 11 8 14 11 8
Below cutoff 1 28 18 18 18 1 61 27 25

Sequence


RefSeq Acc Id: ENSRNOT00000072844   ⟹   ENSRNOP00000067202
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl516,880,899 - 16,896,524 (-)Ensembl
Rnor_6.0 Ensembl516,767,024 - 16,782,647 (-)Ensembl
RefSeq Acc Id: XM_063288519   ⟹   XP_063144589
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8521,686,113 - 21,689,366 (-)NCBI
Protein Sequences
Protein RefSeqs XP_063144589 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000067202.1
RefSeq Acc Id: ENSRNOP00000067202   ⟸   ENSRNOT00000072844
RefSeq Acc Id: XP_063144589   ⟸   XM_063288519
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6QI82-F1-model_v2 AlphaFold Q6QI82 1-632 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-42113 BioCyc
Ensembl Genes ENSRNOG00000012088 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000072844.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1200.240 UniProtKB/TrEMBL
  L1 transposable element, trimerization domain UniProtKB/TrEMBL
InterPro 60S_ribosomal_L19/L19e_sf UniProtKB/TrEMBL
  Ribosomal_L19/L19e UniProtKB/TrEMBL
  Transposase_22 UniProtKB/TrEMBL
KEGG Report rno:100364265 UniProtKB/TrEMBL
NCBI Gene 100364265 ENTREZGENE
PANTHER LINE-1 RETROTRANSPOSABLE ELEMENT ORF1 PROTEIN UniProtKB/TrEMBL
  PTHR11505 UniProtKB/TrEMBL
Pfam Ribosomal_L19e UniProtKB/TrEMBL
PhenoGen Rpl19l4 PhenoGen
RatGTEx ENSRNOG00000012088 RatGTEx
SMART Ribosomal_L19e UniProtKB/TrEMBL
Superfamily-SCOP Ribosomal_L19/L19e UniProtKB/TrEMBL
UniProt M0RC92_RAT UniProtKB/TrEMBL
  Q6QI82_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Rpl19l4  ribosomal protein L19 like 4  LOC100364265  ribosomal protein L19-like  Symbol and Name Changed 1299863 APPROVED
2010-05-06 LOC100364265  ribosomal protein L19-like      Symbol and Name status set to provisional 70820 PROVISIONAL