Sypl1-ps1 (synaptophysin-like 1, pseudogene 1) - Rat Genome Database

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Gene: Sypl1-ps1 (synaptophysin-like 1, pseudogene 1) Rattus norvegicus
Analyze
Symbol: Sypl1-ps1
Name: synaptophysin-like 1, pseudogene 1
RGD ID: 2320902
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC100361058; synaptophysin-like 1-like
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X143,181,719 - 143,182,512 (-)NCBIGRCr8
mRatBN7.2X138,145,492 - 138,146,285 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.0X142,867,837 - 142,868,630 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X142,892,555 - 142,893,348 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X145,304,355 - 145,305,148 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX134,222,285 - 134,223,078 (-)NCBICelera
Cytogenetic MapXq36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Sypl1-ps1
2 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X93956491138956491Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX100567703150256146Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X103312877148312877Rat
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X103312877148312877Rat
738029Stresp2Stress response QTL 23.40.0004stress-related behavior trait (VT:0010451)defensive burying - approachX112934952138400867Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X113937816152453651Rat
634346Insul4Insulin level QTL 40blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)X126975089152453651Rat


Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-881 BioCyc
NCBI Gene 100361058 ENTREZGENE
PhenoGen Sypl1-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Sypl1-ps1  synaptophysin-like 1, pseudogene 1  LOC100361058  synaptophysin-like 1-like  Symbol and Name Changed 1299863 APPROVED
2010-05-05 LOC100361058  synaptophysin-like 1-like      Symbol and Name status set to provisional 70820 PROVISIONAL