C10h16orf96 (similar to human chromosome 16 open reading frame 96) - Rat Genome Database

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Gene: C10h16orf96 (similar to human chromosome 16 open reading frame 96) Rattus norvegicus
Analyze
Symbol: C10h16orf96
Name: similar to human chromosome 16 open reading frame 96
RGD ID: 2320756
Description: Orthologous to human C16orf96 (chromosome 16 open reading frame 96); INTERACTS WITH Aflatoxin B2 alpha (ortholog); benzo[a]pyrene (ortholog); propanal (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CG10869-like; LOC100361104; uncharacterized protein C16orf96 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81011,213,789 - 11,257,180 (-)NCBIGRCr8
mRatBN7.21010,707,529 - 10,750,893 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.01010,897,269 - 10,944,328 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0109,668,036 - 9,710,767 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41010,825,142 - 10,867,498 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera109,667,786 - 9,714,960 (-)NCBICelera
Cytogenetic Map10q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
C10h16orf96
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81011,213,789 - 11,257,180 (-)NCBIGRCr8
mRatBN7.21010,707,529 - 10,750,893 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.01010,897,269 - 10,944,328 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0109,668,036 - 9,710,767 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41010,825,142 - 10,867,498 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera109,667,786 - 9,714,960 (-)NCBICelera
Cytogenetic Map10q12NCBI
C16orf96
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38164,538,601 - 4,600,758 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl164,556,340 - 4,600,758 (+)EnsemblGRCh38hg38GRCh38
GRCh37164,588,602 - 4,650,759 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36164,546,492 - 4,590,319 (+)NCBINCBI36Build 36hg18NCBI36
Celera164,815,346 - 4,859,179 (+)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef164,573,621 - 4,617,310 (+)NCBIHuRef
CHM1_1164,606,407 - 4,650,384 (+)NCBICHM1_1
T2T-CHM13v2.0164,568,062 - 4,630,216 (+)NCBIT2T-CHM13v2.0
4930562C15Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39164,653,280 - 4,685,555 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl164,653,280 - 4,685,550 (+)EnsemblGRCm39 Ensembl
GRCm38164,835,416 - 4,867,691 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl164,835,416 - 4,867,686 (+)EnsemblGRCm38mm10GRCm38
MGSCv37164,835,416 - 4,867,691 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36164,750,644 - 4,782,919 (+)NCBIMGSCv36mm8
Celera165,467,287 - 5,499,048 (+)NCBICelera
Cytogenetic Map16A1NCBI
cM Map162.47NCBI
CUNH16orf96
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544212,839,570 - 12,879,144 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544212,834,662 - 12,879,308 (-)NCBIChiLan1.0ChiLan1.0
C18H16orf96
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2185,081,137 - 5,131,614 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1168,871,564 - 8,923,814 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0163,482,575 - 3,526,672 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1164,650,245 - 4,694,189 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl164,650,245 - 4,693,964 (+)Ensemblpanpan1.1panPan2
C6H16orf96
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1636,793,546 - 36,838,116 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl636,795,470 - 36,837,972 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha638,120,906 - 38,165,762 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0636,996,290 - 37,041,182 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl637,002,409 - 37,040,835 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1636,790,789 - 36,835,630 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0636,683,866 - 36,728,528 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0637,085,721 - 37,130,396 (-)NCBIUU_Cfam_GSD_1.0
CUNH16orf96
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344106,753,467 - 106,795,684 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365304,599,136 - 4,637,123 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C3H16orf96
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1337,765,914 - 37,801,366 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2338,823,037 - 38,835,384 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH16orf96
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.154,245,799 - 4,286,742 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606826,388,076 - 26,440,255 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH16orf96
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248242,354,149 - 2,399,147 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in C10h16orf96
204 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10124158324Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
1576304Schws7Schwannoma susceptibility QTL 70.0115nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)10476552719816042Rat
631828Alc5Alcohol consumption QTL 52.4consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402717245662Rat
737820Alc9Alcohol consumption QTL 92.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402719233348Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
631660Hcar1Hepatocarcinoma resistance QTL 13.40.0001liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)10615418215990232Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat

Markers in Region
D10Rat110  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21010,751,902 - 10,752,138 (+)MAPPERmRatBN7.2
Rnor_6.01010,944,859 - 10,945,094NCBIRnor6.0
Rnor_5.0109,711,789 - 9,712,024UniSTSRnor5.0
RGSC_v3.41010,868,689 - 10,868,925RGDRGSC3.4
RGSC_v3.41010,868,690 - 10,868,925UniSTSRGSC3.4
RGSC_v3.11010,868,640 - 10,869,277RGD
Celera109,715,492 - 9,715,727UniSTS
SHRSP x BN Map105.71UniSTS
SHRSP x BN Map105.71RGD
BE120769  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21010,712,486 - 10,712,686 (+)MAPPERmRatBN7.2
Rnor_6.01010,906,167 - 10,906,366NCBIRnor6.0
Rnor_5.0109,673,097 - 9,673,296UniSTSRnor5.0
RGSC_v3.41010,830,073 - 10,830,272UniSTSRGSC3.4
Celera109,676,684 - 9,676,883UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_063270076   ⟹   XP_063126146
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81011,213,789 - 11,257,180 (-)NCBI
Protein Sequences
Protein RefSeqs XP_063126146 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_063126146   ⟸   XM_063270076


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2320756 AgrOrtholog
BioCyc Gene G2FUF-26042 BioCyc
NCBI Gene 100361104 ENTREZGENE
PhenoGen C10h16orf96 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 C10h16orf96  similar to human chromosome 16 open reading frame 96  LOC100361104  CG10869-like  Symbol and Name Changed 1299863 APPROVED
2010-05-05 LOC100361104  CG10869-like      Symbol and Name status set to provisional 70820 PROVISIONAL