LOC100361259 (60S ribosomal protein L13-like) - Rat Genome Database

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Gene: LOC100361259 (60S ribosomal protein L13-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC100361259
Name: 60S ribosomal protein L13-like
RGD ID: 2320504
Description: Predicted to be involved in translation. Orthologous to human RPL13 (ribosomal protein L13).
Type: protein-coding
RefSeq Status: MODEL
Previously known as: large ribosomal subunit protein eL13-like
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81461,845,213 - 61,845,922 (-)NCBIGRCr8
mRatBN7.21457,632,358 - 57,633,066 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1457,632,408 - 57,633,040 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01459,979,905 - 59,980,631 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1459,979,954 - 59,980,586 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01460,101,952 - 60,102,672 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41462,375,817 - 62,376,449 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1456,736,528 - 56,737,254 (-)NCBICelera
Cytogenetic Map14q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in LOC100361259
1 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)141854133263541332Rat
10755459Coatc15Coat color QTL 150.01681coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)141983694464836944Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143088377768757901Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143766971982669719Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143766971982669719Rat
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143766971982669719Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143766971982669719Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143905723783368335Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143999825175582726Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144226252995023211Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)145002321195023211Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1455147478100147478Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1455624247100624247Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1455624247100624247Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1456631369101631369Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 2 1 1
Below cutoff 3 22 29 20 16 20 2 3 27 19 32 9 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000064713   ⟹   ENSRNOP00000063355
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1457,632,408 - 57,633,040 (-)Ensembl
Rnor_6.0 Ensembl1459,979,954 - 59,980,586 (-)Ensembl
RefSeq Acc Id: XM_039092755   ⟹   XP_038948683
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81461,845,213 - 61,845,922 (-)NCBI
mRatBN7.21457,632,358 - 57,633,066 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038948683 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000048019.2
  ENSRNOP00000063355
  ENSRNOP00000063355.3
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000063355   ⟸   ENSRNOT00000064713
RefSeq Acc Id: XP_038948683   ⟸   XM_039092755
- UniProtKB: F1M2E9 (UniProtKB/TrEMBL),   D3ZD02 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M2E9-F1-model_v2 AlphaFold F1M2E9 1-210 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699335
Promoter ID:EPDNEW_R9854
Type:single initiation site
Name:LOC100361259_1
Description:60S ribosomal protein L13-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01459,980,614 - 59,980,674EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2320504 AgrOrtholog
BioCyc Gene G2FUF-15610 BioCyc
Ensembl Genes ENSRNOG00000029227 UniProtKB/TrEMBL
  ENSRNOG00000055911 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000051343.4 UniProtKB/TrEMBL
  ENSRNOT00000064713.4 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.110 UniProtKB/TrEMBL
InterPro Ribosomal_L13e UniProtKB/TrEMBL
  Ribosomal_L13e_CS UniProtKB/TrEMBL
NCBI Gene 100361259 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L13 UniProtKB/TrEMBL
  PTHR11722 UniProtKB/TrEMBL
Pfam Ribosomal_L13e UniProtKB/TrEMBL
PhenoGen LOC100361259 PhenoGen
PROSITE RIBOSOMAL_L13E UniProtKB/TrEMBL
RatGTEx ENSRNOG00000029227 RatGTEx
  ENSRNOG00000055911 RatGTEx
UniProt D3ZD02 ENTREZGENE, UniProtKB/TrEMBL
  F1M2E9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-05-05 LOC100361259  60S ribosomal protein L13-like      Symbol and Name status set to provisional 70820 PROVISIONAL