Gene: LOC100362173 (rCG36365-like)
Rattus norvegicus |
| Symbol: |
LOC100362173
|
| Name: |
rCG36365-like
|
| Description: |
|
| Type: |
protein-coding
|
| RefSeq Status: |
MODEL
|
| Also known as: |
rCG36365-like
|
| Orthologs: |
Mus musculus : 4930428D18Rik
(RIKEN cDNA 4930428D18 gene)
MGI
|
| Latest Assembly: |
RGSC Genome Assembly v3.4
|
| Position: |
| Map | Chr | Position | Strand | Source |
|---|
Rat Cytogenetic Map | X | | | NCBI | RGSC Genome Assembly v5.0 | X | 44,049,961 - 44,050,596 | + | NCBI | RGSC Genome Assembly v3.4 | X | 61,965,514 - 61,966,149 | + | NCBI | Rat Celera Assembly | X | 41,147,541 - 41,148,176 | + | NCBI |
|
| Model |
|
Genomics
 Comparative Map Data
| LOC100362173 (Rattus norvegicus) |
| Map | Chr | Position | Strand | Source |
|---|
Rat Cytogenetic Map | X | | | NCBI | RGSC Genome Assembly v5.0 | X | 44,049,961 - 44,050,596 | + | NCBI | RGSC Genome Assembly v3.4 | X | 61,965,514 - 61,966,149 | + | NCBI | Rat Celera Assembly | X | 41,147,541 - 41,148,176 | + | NCBI |
|
| 4930428D18Rik (Mus musculus) |
| Map | Chr | Position | Strand | Source |
|---|
Mouse Genome Assembly GRCm38 | X | 76,393,350 - 76,397,979 | + | NCBI | Mouse cM Map | X | | + | NCBI | Mouse Celera Assembly | X | 67,768,501 - 67,773,112 | + | NCBI | Mouse Genome Assembly Build 37 | X | 73,638,689 - 73,643,318 | + | NCBI | Mouse Genome Assembly Build 36.1 | X | 73,638,689 - 73,643,318 | + | NCBI | Mouse Cytogenetic Map | X | A7.3 | | NCBI |
|
QTLs in Region (RGSC Genome Assembly v3.4)
| 61431 | Cia19 | Collagen induced arthritis QTL 19 | 4.4 | | Joint/bone inflammation | type II collagen induced | X | 1 | 88514313 | Rat | | 1598872 | Memor14 | Memory QTL 14 | 4.5 | | Memory | social recognition | X | 1 | 118123026 | Rat | | 1598809 | Memor15 | Memory QTL 15 | 4.4 | | Memory | social recognition | X | 9007287 | 160699376 | Rat | | 1598856 | Memor1 | Memory QTL 1 | 1.9 | | Memory | navigation-spatial | X | 9007287 | 160699376 | Rat | | 5685004 | Bss104 | Bone structure and strength QTL 104 | 3.9 | | Bone structure | tibial area | X | 10563466 | 134157626 | Rat | | 738029 | Stresp2 | Stress response QTL 2 | 3.4 | .0004 | Stress response | defensive burying - approach | X | 11470971 | 145580610 | Rat | | 738035 | Stresp1 | Stress response QTL 1 | 4.96 | .000011 | Stress response | defensive burying - coping | X | 11471200 | 62951569 | Rat | | 731181 | Uae27 | Urinary albumin excretion QTL 27 | 2.7 | .0059 | Renal function | urine albumin level | X | 18886934 | 63886934 | Rat | | 1298071 | Edpm12 | Estrogen-dependent pituitary mass QTL 12 | 3.2 | | Gland mass | pituitary | X | 23620000 | 68620000 | Rat | | 631666 | Iddm5 | Insulin dependent diabetes mellitus QTL 5 | | | Glucose level | | X | 24794818 | 69794818 | Rat | | 71116 | Niddm16 | Non-insulin dependent diabetes mellitus QTL 16 | 7.81 | | Glucose level | postprandial | X | 36612231 | 81612231 | Rat | | 1598873 | Memor2 | Memory QTL 2 | 2.5 | | Memory | navigation-spatial | X | 41386788 | 62691414 | Rat | | 2290375 | Gluco34 | Glucose level QTL 34 | 2.75 | | Glucose level | fasting | X | 41386788 | 62894306 | Rat | |
Sequence
Nucleotide Sequences
Reference Sequences
| RefSeq Acc Id: |
XM_002730241
|
| RefSeq Status: |
|
| Type: |
CODING
|
| Protein Acc Id: |
XP_002730287
|
| Position: |
| Map | Chr | Position | Strand | Source |
|---|
RGSC Genome Assembly v5.0 | X | 44,049,961 - 44,050,596 | + | NCBI | RGSC Genome Assembly v3.4 | X | 61,965,514 - 61,966,149 | + | RGD |
|
| RefSeq Acc Id: |
XM_003754764
|
| RefSeq Status: |
|
| Type: |
CODING
|
| Protein Acc Id: |
XP_003754812
|
| Position: |
| Map | Chr | Position | Strand | Source |
|---|
Rat Celera Assembly | X | 41,147,541 - 41,148,176 | + | NCBI |
|
Protein Sequences Strain Variation
Strain Sequence Variants
ACI/Eur (MCW)
|
|
| Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob) |
| Platform: |
Illumina HiSeq 2000 |
| Secondary Analysis: |
BWA v0.5.9-r16 and GATK v1.3-14 |
|
|
ACI/N (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
SOLID |
| Secondary Analysis: |
SAP42 (Developed at RNAAS) |
| Breeder: |
National Institutes of Health |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
BN-Lx (ICL)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Imperial College London (Dr Timothy Aitman) |
| Platform: |
SOLID |
| Secondary Analysis: |
BWA, GATK, Samtools |
| Breeder: |
Academy of Sciences of the Czech Republic (Dr.Michal Pravenec) |
| Grant Information: |
MC-A654-5QB00 |
|
|
BN-Lx (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) |
| Platform: |
SOLID |
| Secondary Analysis: |
SAP42 (Developed at RNAAS) |
| Breeder: |
Academy of Sciences of the Czech Republic (Dr.Michal Pravenec) |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
BN/NHsdMcwi (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
SOLID |
| Secondary Analysis: |
SAP42 (Developed at RNAAS) |
| Breeder: |
Medical College of Wisconsin |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
BN/SsN (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
SOLID |
| Secondary Analysis: |
SAP42 (Developed at RNAAS) |
| Breeder: |
National Institutes of Health |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
Buf/N (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
SOLID |
| Secondary Analysis: |
SAP42 (Developed at RNAAS) |
| Breeder: |
National Institutes of Health |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
COP/Crl (MCW & UW)
|
|
| Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob)
Univiersity of Wisconsin (Jim Shull) |
| Platform: |
Illumina HiSeq 2000 |
| Secondary Analysis: |
BWA v0.5.9-r16 and GATK v2.3-5 |
| Breeder: |
Charles River |
| Grant Information: |
NIH (CA77876) |
|
|
F344/N (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
SOLID |
| Breeder: |
National Institutes of Health |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
FHH/EurMcwi (MCW)
|
|
| Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob) |
| Platform: |
Illumina HiSeq 2000 |
| Secondary Analysis: |
BWA v0.5.9-r16 and GATK v1.3-14 |
|
|
FHH/EurMcwi (MDC)
|
|
| Sequenced By: |
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
Illumina/Solexa, Genome Analyzer II |
| Secondary Analysis: |
CASAVA Software v1.7 |
| Breeder: |
Medical College of Wisconsin |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
FHL/EurMcwi (MCW)
|
|
| Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob) |
| Platform: |
Illumina HiSeq 2000 |
| Secondary Analysis: |
BWA v0.5.9-r16 and GATK v1.3-14 |
|
|
GH/OmrMcwi (MCW)
|
|
| Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob) |
| Platform: |
Illumina HiSeq 2000 |
| Secondary Analysis: |
BWA v0.5.9-r16 and GATK v2.3-5 |
|
|
LE/Stm (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
SOLID |
| Secondary Analysis: |
SAP42 (Developed at RNAAS) |
| Breeder: |
Dr. Tadao Serikawa, Kyoto Japan. |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
M520/N (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
SOLID |
| Secondary Analysis: |
SAP42 (Developed at RNAAS) |
| Breeder: |
National Institutes of Health |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
MR/N (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
SOLID |
| Breeder: |
National Institutes of Health |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
SHR/Olalpcv (ICL)
|
|
| Sequenced By: |
Imperial College London (Dr Timothy Aitman)
University of British Columbia (Dr. Steven Jones) |
| Platform: |
Illumina Hi-seq 2000 and GAII |
| Secondary Analysis: |
BWA, GATK |
| Breeder: |
Institute of Physiology, Academy of Sciences of the Czech Republic, Prague |
| Grant Information: |
LSHG-CT-2005-019015, HEALTH-F4-2010-241504 |
|
|
SHR/Olalpcv (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Imperial College London (Dr Timothy Aitman) |
| Platform: |
Illumina |
| Secondary Analysis: |
GATK |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
SHRSP/Gcrc (MDC)
|
|
| Sequenced By: |
Max Delbruch Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
Illumina/Solexa, Genome Analyzer II |
| Secondary Analysis: |
CASAVA Software v1.7 |
| Breeder: |
University of Glasgow, Anna Dominiczak |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
SR/JrHsd (MCW)
|
|
| Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob) |
| Platform: |
Illumina HiSeq 2000 |
| Secondary Analysis: |
BWA v0.5.9-r16 and GATK v1.3-14 |
| Breeder: |
Harlan |
|
|
SS/JrHsdMcwi (MCW)
|
|
| Sequenced By: |
Medical College of Wisconsin (Dr. Howard Jacob) |
| Platform: |
Illumina HiSeq 2000 |
| Secondary Analysis: |
BWA v0.5.9-r16 and GATK v1.3-14 |
| Grant Information: |
R01 HL089930 |
|
|
SS/JrHsdMcwi (MDC)
|
|
| Sequenced By: |
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
Illumina/Solexa, Genome Analyzer II |
| Secondary Analysis: |
CASAVA Software v1.7 |
| Breeder: |
Medical College of Wisconsin |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
WKY/N (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
SOLID |
| Secondary Analysis: |
SAP42 (Developed at RNAAS) |
| Breeder: |
National Institutes of Health |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
WN/N (KNAW)
|
|
| Sequenced By: |
Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner) |
| Platform: |
SOLID |
| Secondary Analysis: |
SAP42 (Developed at RNAAS) |
| Breeder: |
National Institutes of Health |
| Grant Information: |
EURATRANS (HEALTH-F4-2010-241504) |
|
|
Additional Information
External Database Links Nomenclature History
| Date |
Current Symbol |
Current Name |
Previous Symbol |
Previous Name |
Description |
Reference |
Status |
| 2010-05-05 |
LOC100362173 |
rCG36365-like |
|
|
Symbol and Name status set to provisional |
1724 |
PROVISIONAL |
|
|
| RGD Object Information |
| RGD ID: |
2318711 |
| Created: |
2010-05-05 |
| Species: |
Rattus norvegicus |
| Last Modified: |
2013-04-16 |
| Status: |
ACTIVE |
|
