Ssbp1-ps3 (single stranded DNA binding protein 1, pseudogene 3) - Rat Genome Database

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Gene: Ssbp1-ps3 (single stranded DNA binding protein 1, pseudogene 3) Rattus norvegicus
Analyze
Symbol: Ssbp1-ps3
Name: single stranded DNA binding protein 1, pseudogene 3
RGD ID: 2318551
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC100362234; single-stranded DNA binding protein 1-like
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81969,812,797 - 69,819,653 (+)NCBIGRCr8
mRatBN7.21952,915,425 - 52,922,800 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.01957,709,622 - 57,715,641 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01968,420,504 - 68,426,656 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41955,134,121 - 55,135,441 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1952,282,213 - 52,288,798 (+)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Ssbp1-ps3
119 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum insulin level (CMO:0000358)193383821455283146Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193383821455283146Rat
5135224Leukc1Leukocyte quantity QTL 1eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)194434021455283277Rat
2313395Anxrr26Anxiety related response QTL 26aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)194997648153225766Rat


Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-5224 BioCyc
NCBI Gene 100362234 ENTREZGENE
PhenoGen Ssbp1-ps3 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Ssbp1-ps3  single stranded DNA binding protein 1, pseudogene 3  LOC100362234  single-stranded DNA binding protein 1-like  Symbol and Name Changed 1299863 APPROVED
2010-05-05 LOC100362234  single-stranded DNA binding protein 1-like      Symbol and Name status set to provisional 70820 PROVISIONAL