LOC100362339 (ribosomal protein S19-like)

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Keyword

Gene: LOC100362339 (ribosomal protein S19-like) Rattus norvegicus

Symbol:

LOC100362339

Name:

ribosomal protein S19-like

Description:

ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN translation (inferred); FOUND IN ribosome (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Also known as:

ribosomal protein S19-like

Latest Assembly:

RGSC Genome Assembly v3.4

Position:

Map	Chr	Position	Strand	Source
Rat Cytogenetic Map	17			NCBI
RGSC Genome Assembly v5.0	17	51,752,076 - 51,752,527	+	NCBI
RGSC Genome Assembly v3.4	17	59,563,079 - 59,563,579	+	NCBI
Rat Celera Assembly	17	47,372,335 - 47,372,786	+	NCBI

Model

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Gene Ontology Annotations

Genomics

QTLs in Region (RGSC Genome Assembly v3.4)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354658	Spl8	Serum phospholipid level QTL 8	3.8		Lipid level	serum phospholipids	17	1	71570057	Rat
1354581	Bp247	Blood pressure QTL 247	4.5		Blood pressure	pulse pressure	17	1	81039660	Rat
1354662	Rf49	Renal function QTL 49	2.9		Creatinine level	serum	17	1	81039660	Rat
1354596	Bw32	Body weight QTL 32	4.5		Body weight		17	9988620	71570057	Rat
1354630	Cm34	Cardiac mass QTL 34	8.7		Cardiac mass	left ventricle	17	9988620	81039660	Rat
1354638	Insul1	Insulin level QTL 1	4.8		Insulin level	serum	17	9988620	81039660	Rat
1354651	Lmblg2	Limb length QTL 2	6		Limb morphology	tibia length	17	9988620	81039660	Rat
2303561	Bw91	Body weight QTL 91	2		Body weight		17	15228042	60228042	Rat
1354629	Scl31	Serum cholesterol level QTL 31	4.1		Lipid level	serum cholesterol	17	26570057	71570057	Rat
1354640	Scl32	Serum cholesterol level QTL 32	5.4		Lipid level	HDL cholesterol	17	26570057	71570057	Rat
1354654	Spl7	Serum phospholipid level QTL 7	5.5		Lipid level	serum phospholipids	17	26570057	71570057	Rat
1354659	Spl6	Serum phospholipid level QTL 6	3.9		Lipid level	VLDL	17	26570057	71570057	Rat
1354628	Stl13	Serum triglyceride level QTL 13	3.8		Lipid level	total triglycerides	17	27118351	71570057	Rat
61394	Bp8	Blood pressure QTL 8	2.2		Blood pressure	salt-loaded systolic	17	28967654	70289047	Rat
1581512	Cm55	Cardiac mass QTL 55	2.8	.05	Cardiac mass	left ventricule	17	33277173	65478569	Rat
4889955	Bss93	Bone structure and strength QTL 93	4.4		Bone structure		17	33277173	71214857	Rat
2302377	Scl61	Serum cholesterol level QTL 61	4.36		Lipid level	serum HDL-cholesterol	17	33639527	62009961	Rat
1354635	Bp245	Blood pressure QTL 245	6		Blood pressure	mean arterial	17	36039660	81039660	Rat
2324621	Coatc5	Coat color QTL 5			Coat color	hooded	17	37727971	85072478	Rat
1559055	Bp278	Blood pressure QTL 278		.04	Blood pressure	mean arterial	17	38257371	73041111	Rat
724549	Niddm56	Non-insulin dependent diabetes mellitus QTL 56		.03	Glucose level		17	38353858	83353858	Rat
1354663	Bvd5	Brain ventricular dilatation QTL 5	3.54	.001	Head/brain development	brain ventricular dilatation	17	38353858	92741218	Rat
1300148	Bp192	Blood pressure QTL 192	3.47		Blood pressure	salt-loaded time series calculation	17	41028379	85072478	Rat
724528	Uae4	Urinary albumin excretion QTL 4	4.9	.0001	Renal function	urine albumin level	17	42344830	81039660	Rat
631497	Bp98	Blood pressure QTL 98	3.66		Blood pressure	systolic	17	46994933	71214857	Rat
1354619	Bp242	Blood pressure QTL 242	6.3		Blood pressure	systolic	17	47055924	81039660	Rat
1598871	Memor5	Memory QTL 5	5.3		Memory	navigation-spatial	17	47628673	94800809	Rat
2317054	Aia12	Adjuvant induced arthritis QTL 12	4.24		Joint/bone inflammation	adjuvant induced	17	49069974	94069974	Rat
2317060	Aia26	Adjuvant induced arthritis QTL 26	3.22		Joint/bone inflammation	adjuvant induced	17	49069974	94069974	Rat
1358295	Aocep1	Aortic cell protein QTL 1	6.1	.00000071	Protein level	aortic cell percentage	17	51995423	96995423	Rat
4889894	Eae33	Experimental allergic encephalomyelitis QTL 33	5.2	.0001	Brain/spinal cord inflammation	maximum Eae score	17	59104847	66993271	Rat
2317053	Aia25	Adjuvant induced arthritis QTL 25	2.69		Joint/bone inflammation	adjuvant induced	17	59104944	71569891	Rat

Sequence

Nucleotide Sequences

Protein Sequences

Strain Variation

Strain Sequence Variants

ACI/Eur (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14

ACI/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

BN-Lx (ICL)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Imperial College London (Dr Timothy Aitman)
Platform:	SOLID
Secondary Analysis:	BWA, GATK, Samtools
Breeder:	Academy of Sciences of the Czech Republic (Dr.Michal Pravenec)
Grant Information:	MC-A654-5QB00

BN-Lx (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	Academy of Sciences of the Czech Republic (Dr.Michal Pravenec)
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

BN/NHsdMcwi (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	Medical College of Wisconsin
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

BN/SsN (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

Buf/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

COP/Crl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) Univiersity of Wisconsin (Jim Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v2.3-5
Breeder:	Charles River
Grant Information:	NIH (CA77876)

F344/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14

FHH/EurMcwi (MDC)

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Sequenced By:	Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	Illumina/Solexa, Genome Analyzer II
Secondary Analysis:	CASAVA Software v1.7
Breeder:	Medical College of Wisconsin
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v2.3-5

LE/Stm (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	Dr. Tadao Serikawa, Kyoto Japan.
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

M520/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

MR/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

SHR/Olalpcv (ICL)

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Sequenced By:	Imperial College London (Dr Timothy Aitman) University of British Columbia (Dr. Steven Jones)
Platform:	Illumina Hi-seq 2000 and GAII
Secondary Analysis:	BWA, GATK
Breeder:	Institute of Physiology, Academy of Sciences of the Czech Republic, Prague
Grant Information:	LSHG-CT-2005-019015, HEALTH-F4-2010-241504

SHR/Olalpcv (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Imperial College London (Dr Timothy Aitman)
Platform:	Illumina
Secondary Analysis:	GATK
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

SHRSP/Gcrc (MDC)

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Sequenced By:	Max Delbruch Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	Illumina/Solexa, Genome Analyzer II
Secondary Analysis:	CASAVA Software v1.7
Breeder:	University of Glasgow, Anna Dominiczak
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14
Breeder:	Harlan

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14
Grant Information:	R01 HL089930

SS/JrHsdMcwi (MDC)

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Sequenced By:	Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	Illumina/Solexa, Genome Analyzer II
Secondary Analysis:	CASAVA Software v1.7
Breeder:	Medical College of Wisconsin
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

WKY/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

WN/N (KNAW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLID
Secondary Analysis:	SAP42 (Developed at RNAAS)
Breeder:	National Institutes of Health
Grant Information:	EURATRANS (HEALTH-F4-2010-241504)

Additional Information

External Database Links

Nomenclature History

More on LOC100362339
	Entrez Gene
	Ensembl Gene
	Genome Browser
	NCBI Map Viewer
	Vista
	Vista + UCSC

RGD Object Information
RGD ID:	2318347
Created:	2010-05-05
Species:	Rattus norvegicus
Last Modified:	2013-06-04
Status:	ACTIVE