Gm8770 (predicted gene 8770) - Rat Genome Database

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Gene: Gm8770 (predicted gene 8770) Mus musculus
Analyze
Symbol: Gm8770
Name: predicted gene 8770
RGD ID: 2312154
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EG667700
Related Functional Gene: Kmt5a  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X77,829,307 - 77,830,658 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX77,829,353 - 77,830,461 (+)EnsemblGRCm39 Ensembl
GRCm38X78,785,701 - 78,787,052 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX78,785,747 - 78,786,855 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X76,031,129 - 76,032,191 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X75,038,623 - 75,039,574 (+)NCBIMGSCv36mm8
CeleraX70,110,670 - 70,111,731 (+)NCBICelera
Cytogenetic MapXBNCBI
cM MapX38.35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gm8770
15 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:127
Count of miRNA genes:127
Interacting mature miRNAs:127
Transcripts:ENSMUST00000121113
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
1300794Spha2_msperm head anomaly 2 (mouse)Not determinedX3992149886260137Mouse
1300702Fcsa4_mfemoral cross-sectional area 4 (mouse)Not determinedX4602744480027567Mouse
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
25314311Syncl3_msynaptonemal complex length 3 (mouse)X5198887789743606Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
10412108Desp5_mdespair 5 (mouse)Not determinedX5472235188722351Mouse
13464140Hdlq108_mHDL QTL 108 (mouse)X5777196091771960Mouse
25314316Mlh1fc3_mMLH1 foci count 3 (mouse)X6134360689843606Mouse
25314318Sccor2_msynaptonemal complex length to mean MLH1 count ratio 2 (mouse)X7054360696543606Mouse
4141665Mhysq2_mmale hybrid sterility QTL 2 (mouse)Not determined71453852139203212Mouse
12879918Shm4_msperm head morphology 4 (mouse)X72072050102062720Mouse
1357500Mdmsc6_mmodifier of muscularity 6 (mouse)Not determinedX75306671109306758Mouse
1302054Gct4_mgranulosa cell tumorigenesis 4 (mouse)Not determinedX76124336102062720Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_018088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL671900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000121113
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX77,829,353 - 77,830,461 (+)Ensembl
GRCm38.p6 EnsemblX78,785,747 - 78,786,855 (+)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000082912 Ensembl, ENTREZGENE
MGD MGI:3646216 ENTREZGENE
NCBI Gene 667700 ENTREZGENE
PhenoGen Gm8770 PhenoGen