Gm7104 (predicted gene 7104) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Gm7104 (predicted gene 7104) Mus musculus
Analyze
Symbol: Gm7104
Name: predicted gene 7104
RGD ID: 2307795
MGI Page MGI
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: PROVISIONAL
Previously known as: 633093
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Related Functional Gene: Rexo1  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391288,249,637 - 88,253,840 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1288,251,308 - 88,253,839 (-)EnsemblGRCm39 Ensembl
GRCm381288,282,867 - 88,287,070 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1288,284,538 - 88,287,069 (-)EnsemblGRCm38mm10GRCm38
MGSCv371289,521,311 - 89,525,514 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361288,797,667 - 88,811,637 (-)NCBIMGSCv36mm8
Celera1289,597,681 - 89,601,745 (-)NCBICelera
Cytogenetic Map12D2NCBI
cM Map1242.46NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:17015433   PMID:21873635  


Genomics

Comparative Map Data
Gm7104
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391288,249,637 - 88,253,840 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1288,251,308 - 88,253,839 (-)EnsemblGRCm39 Ensembl
GRCm381288,282,867 - 88,287,070 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1288,284,538 - 88,287,069 (-)EnsemblGRCm38mm10GRCm38
MGSCv371289,521,311 - 89,525,514 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361288,797,667 - 88,811,637 (-)NCBIMGSCv36mm8
Celera1289,597,681 - 89,601,745 (-)NCBICelera
Cytogenetic Map12D2NCBI
cM Map1242.46NCBI
REXO1L6P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38885,826,704 - 85,827,839 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl885,826,953 - 85,828,467 (-)EnsemblGRCh38hg38GRCh38
GRCh37886,838,933 - 86,840,068 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36886,884,284 - 86,885,361 (-)NCBINCBI36Build 36hg18NCBI36
Celera882,559,345 - 82,560,422 (-)NCBICelera
Cytogenetic Map8q21.2NCBI
HuRef882,049,112 - 82,050,189 (-)NCBIHuRef
CHM1_1886,809,838 - 86,810,973 (-)NCBICHM1_1
T2T-CHM13v2.0886,944,156 - 86,945,291 (-)NCBIT2T-CHM13v2.0

Variants

.
Variants in Gm7104
142 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:152
Count of miRNA genes:145
Interacting mature miRNAs:149
Transcripts:ENSMUST00000179741
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124169317590887526Mouse
27226728Tibl20_mtibia length 20, 16 week (mouse)125914678693866774Mouse
27226776Tibl6_mtibia length 6, 5 week (mouse)126064678692666774Mouse
10043948Pbft6_mpercent body fat 6 (mouse)Not determined126120542795205427Mouse
1301476Pbwg12_mpostnatal body weight growth 12 (mouse)Not determined126204016496040364Mouse
27226797Scvln19_msacral vertebrae length 2, 16 week (mouse)126214678699466259Mouse
10043895Bw20_mbody weight QTL 20 (mouse)Not determined126230825296308252Mouse
1301046Par3_mpulmonary adenoma resistance 3 (mouse)Not determined126395670897956883Mouse
1301337Cdcs8_mcytokine deficiency colitis susceptibility 8 (mouse)Not determined126468908398689229Mouse
1300633Cdcs7_mcytokine deficiency colitis susceptibility 7 (mouse)Not determined126468908398689229Mouse
14746976Manh73_mmandible shape 73 (mouse)126585713199857131Mouse
27226771Tibl14_mtibia length 14, 10 week (mouse)126834677498766259Mouse
27226793Feml10_mfemur length 10, 5 week (mouse)1268346774113363620Mouse
4141738Tgq23_mtriglyceride QTL 23 (mouse)Not determined72112877106112877Mouse
1301926Adip6_madiposity 6 (mouse)Not determined1273887422107887526Mouse
1301689Skull18_mskull morphology 18 (mouse)Not determined1273887422107887526Mouse
13524842Ppiq10a_mprepulse inhibition QTL 10a (mouse)1277512220111512220Mouse
4141610Tailaq1_mtail length adjusted QTL 1 (mouse)Not determined80956708113383533Mouse
4142401Egq10_mearly growth QTL 10 (mouse)Not determined80956708113383533Mouse
4141335W6q10_mweight 6 weeks QTL 10 (mouse)Not determined80956708113383533Mouse
39128213Lwq23_mliver weight QTL 10 (mouse)1280956708113383533Mouse
13524849Ppiq11a_mprepulse inhibition QTL 11a (mouse)1280989143114989143Mouse
25823169Hrsq8_mhost response to SARS QTL 8, log titer (mouse)1281696245108495368Mouse
13524846Ppiq11_mprepulse inhibition QTL 11 (mouse)1282666396116666396Mouse
1301492Dbsty3_mdiabesity 3 (mouse)Not determined1283532075117532224Mouse
1301879Insq10_minsulin QTL 10 (mouse)Not determined1283532075117532224Mouse
1300883Ath21_matherosclerosis 21 (mouse)Not determined1285961579119961683Mouse
10412156Nociq3_mnociceptive sensitivity inflammatory QTL 3 (mouse)Not determined1286396075114831653Mouse
4142007Chlq17_mcirculating hormone level QTL 17 (mouse)Not determined1288052874120092757Mouse
1300545Lifespan3_mlife span 3 (mouse)Not determined1288052874120092757Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000179741
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1288,251,308 - 88,253,839 (-)Ensembl
GRCm38.p6 Ensembl1288,284,538 - 88,287,069 (-)Ensembl
RefSeq Acc Id: NR_033570
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391288,249,637 - 88,253,840 (-)NCBI
GRCm381288,282,867 - 88,287,070 (-)ENTREZGENE
MGSCv371289,521,311 - 89,525,514 (-)RGD
Celera1289,597,681 - 89,601,745 (-)NCBI
cM Map12 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000094635 Ensembl
MGD MGI:3779672 ENTREZGENE
NCBI Gene 633093 ENTREZGENE
PhenoGen Gm7104 PhenoGen