RPS29P28 (ribosomal protein S29 pseudogene 28) - Rat Genome Database

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Gene: RPS29P28 (ribosomal protein S29 pseudogene 28) Homo sapiens
Analyze
Symbol: RPS29P28
Name: ribosomal protein S29 pseudogene 28
RGD ID: 2304727
HGNC Page HGNC:36830
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPS29_22_1795
Related Functional Gene: RPS29  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X96,195,477 - 96,195,617 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX96,195,477 - 96,195,617 (+)EnsemblGRCh38hg38GRCh38
GRCh37X95,450,476 - 95,450,616 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X95,450,476 - 95,450,616 (+)NCBINCBI36Build 36hg18NCBI36
CeleraX95,968,422 - 95,968,562 (+)NCBICelera
Cytogenetic MapXq21.33NCBI
HuRefX85,253,344 - 85,253,484 (+)NCBIHuRef
CHM1_1X95,343,394 - 95,343,534 (+)NCBICHM1_1
T2T-CHM13v2.0X94,634,816 - 94,634,956 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:55
Count of miRNA genes:55
Interacting mature miRNAs:55
Transcripts:ENST00000446439
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
DXS6789  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X95,449,414 - 95,449,554UniSTSGRCh37
Build 36X95,336,070 - 95,336,210RGDNCBI36
CeleraX95,967,360 - 95,967,500RGD
Cytogenetic MapXq23-q26UniSTS
Cytogenetic MapXq21.33UniSTS
HuRefX85,252,278 - 85,252,422UniSTS
Marshfield Genetic MapX62.52UniSTS
Marshfield Genetic MapX62.52RGD
deCODE Assembly MapX96.95UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue appendage
High
Medium
Low 1 4 4 1 4 4 2
Below cutoff 5 1 8 7 3 7 3 1 2 2 2 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000446439
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX96,195,477 - 96,195,617 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPS29P28 COSMIC
Ensembl Genes ENSG00000232069 Ensembl, ENTREZGENE
GTEx ENSG00000232069 GTEx
HGNC ID HGNC:36830 ENTREZGENE
Human Proteome Map RPS29P28 Human Proteome Map
NCBI Gene 100271402 ENTREZGENE